TCONS_00015533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015533
Unique NameTCONS_00015533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015533 ID=TCONS_00015533|Name=TCONS_00015533|organism=Clytia hemisphaerica|type=transcript|length=2533bp
GCGTGGTCCACGTTCGAATATTCGACTTTTTTCCTAGAATTTCTAACAGT
AAATTTGACAGTGTGTTTGAAAAAAGGGATTCATACAGGATTTATACAAG
CAAAACTCATCAAAATGGCTTCTAGGTGGCGAACATGGGATTTACATTTT
GCAACAGACATTTTGGGAAATAAGTTGCCTTTTGATTCTCTGGATAGTAT
ACCTGTTGGTTCAAGAGGGAAATTTCGCTTCAATATACAACCTACTATGT
TGAAGATACCTCTTCTTCAAGATTTTGGAAAGTTAGATGGTAAAGTTGGG
GGTAGAGGGAAACGACTTTGTGAGCAGAATGAATCAAAAGATGACAAATT
GAATAAAGTAAACAAGACAAGTCTCGTGGATAATGCTGTTTATCGTAAAG
AGATGCGTCAACAATGGCatgaaaaagaatttccatCTTTATCAGAGACA
CATACACAATCAAATGATGATAAATCTActcaagaaaaagtcaaaaatac
aaagaatgtaAATCAACAGTTTGAAGATGCAGAAATAAGCAAAACAATTC
AAGACTTTTCTAATCAAATCTTTATAAATGAAGATATTTTTTCAGATCCA
AGTGTGAAAGCAGAAAACACTTCAGATCAAAACACTACTAAAGAACAAAA
TGTCCCTGATGAATGGGAGGAAAATCTACCAGCTCAAAGTGATACAGATA
TAAAAGATACTCAAGATGCTGAAAAATCCTTAAACGATTCAGAAAAGGAA
AGTTCGTTCACCAGCGCCCTAAAAGGTGAAGAAGATAAAAGTTTTACAGA
CAATGATTTTTTGCAGTCTCTTGATGAACCAGAATATTACATTCTCATTG
AAGGATTAACAAAGGAGGTTGATgaggaaaattttaaagaactcATCTCT
TCATTTGGAGAAATTGAACTGTTCCTGGCTCAAGTATGCTCAGATGAAAC
ACACTTAAATGTTATTGTGAAGATGGTGGATAGTTCCCATTGTGATTGGG
TTATTTCATGTCTCGATGGTGACATTTATGAAGATGGTGGAGAACGCTTA
TCTGCAAAAGCTGTTGTGGATATGAAGATTTGCCAATAAGTTCCTTCCAA
ACCACTTACATCAACATACTGGAAAGTGGAAAGTTCCATTATATACAACT
GGTATCTTGAGTGGTAtttatctttcaacaaattacATAAATGGTAACTT
TGATCCTGTCAATAATCTAAAACTGGCTCACGTTGTGATGGCTGAAAACA
ATGAGAATGAAAACATAAAAcctagaaaaacaaaaacaatgaatTTTCTT
GCTGATGCTGTAGAGATTGCTGCACCTGCTGTAGTACATGTGGATGTTGT
ATCCCAACACCGTAGTTACTTTCATGAGACAAATAGCAGTGGCTCTGGTT
TCATAGTTACTGAAGGTGGAATAGTGCTCACTAATGCTCACGTCGTTGGA
AATGCATCCAAAGTCAATGTGAGGTTATCAAATGGTAAAACATACAAAGG
ATCTGTGATTGATGTTGATCGAGAAACTGACTTGGCTGCTGTCAAATTAG
ACAATAAGTCAGATATCAAATTTCCTTTCTTAAAACTTGGTCCATCAGAA
GACATTCGTGCAGGTGAATTTGTAGCAGCTTTGGGTAGCCCTTTACGGTT
GAGCAACACAGTTACAGCTGGCATTGTTAGCTCATTGCAAAGAGGTAGTG
CTGAACTTGGCATGAGAAAAGGAATGTATTATATCCAAACTGATGCTGCT
ATAAATGTTGGCAACTCTGGTGGTCCACTGATAAATCTGGACGGGGAGGT
AATTGGTATCAATTGCATTACAGTTCAACAAGCTGCTGGTATCTCATTTG
CAATTCCTTCAGATATTGTTGCTGAATTCCTTGATGGTGCCGTCAAGAGG
GAGaaagattttgtcaagaatGGAGGATTTTTCAGGAAAGCAAAACGGAA
TGAGAAGTTTTATATTGGAATTACGATGCTGACACTTTCACCAGAAATTA
TTGAAGAGCTAAAGCGAAGAAACCCCAACTTCTTTGAAAATGTGGAAGGT
GGTGTTTTGGTCACTAAAGTTAATCGTGGATCTCCTTCAGAACGCTGTGG
ATTGGTTGGTGGTGATGTCATTTTATCTATCAATAACAAATCTGTGTCTT
CGACAAGAGATGTGTACACAGAGGTGCGCAAAGGTGATACCATGATTATg
aaagtcaaacgcggtgaaaaCATTGTTACATTGAATGTTGAGCCTGAAAT
CACAAGTAGACTATGATGTCAATTTGATTAGCCTGGATAACCTAGGTTTG
TTGGATTACATCCTTAATATAGGCTACTCTCAAAAGTGAAATGATACCTT
GTTCAGTTGCCTAAAGGATGCAAGGCAAGTACATTAAttgttatttttct
aaattgtaCATAGaagatatataattttttttaatctatattTTACAGGG
TGTTGATATCAAcacaaatcaaaaaatgaaaagaaaatgtaaCTTGGAGT
ACTAATTCTCGTTTGACTTGACCTGTGTCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00015533-protein

>TCONS_00015533-protein ID=TCONS_00015533-protein|Name=TCONS_00015533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
AWSTFEYSTFFLEFLTVNLTVCLKKGIHTGFIQAKLIKMASRWRTWDLHF
ATDILGNKLPFDSLDSIPVGSRGKFRFNIQPTMLKIPLLQDFGKLDGKVG
GRGKRLCEQNESKDDKLNKVNKTSLVDNAVYRKEMRQQWHEKEFPSLSET
HTQSNDDKSTQEKVKNTKNVNQQFEDAEISKTIQDFSNQIFINEDIFSDP
SVKAENTSDQNTTKEQNVPDEWEENLPAQSDTDIKDTQDAEKSLNDSEKE
SSFTSALKGEEDKSFTDNDFLQSLDEPEYYILIEGLTKEVDEENFKELIS
SFGEIELFLAQVCSDETHLNVIVKMVDSSHCDWVISCLDGDIYEDGGERL
SAKAVVDMKICQ
Run BLAST on NCBI

transcript from alignment at sc0000212:34618..55147-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015533 ID=TCONS_00015533|Name=TCONS_00015533|organism=Clytia hemisphaerica|type=transcript|length=20530bp|location=Sequence derived from alignment at sc0000212:34618..55147- (Clytia hemisphaerica)
GCGTGGTCCACGTTCGAATATTCGACTTTTTTCCTAGAATTTCTAACAGT
AAATTTGACAGTGTGTTTGAAAAAAGGGATTCATACAGGTATATTAAATT
CTATTCTAGTTACCAAAAGCAACGTGGTGGCATCAGAAAGCCTTCTTACG
AAAGCATCCACCGAAGGGGGACTTCAAAATATCTGTTCTGAAGGCACGTT
CCAGCTGGATATGGCGGCTGTTCTTATCTTAGCGAACTAAAGAAAAAAGT
CTGCTGGAAAAAAGTGGTCTGTTCTACTGAAGATTTGGACCAGCTGGAAA
AATATGGTCTGTTCTACTGAAGATTGGGACCAGCTGGAAAAATATGACCT
GTTCTACTGAAGATTGGGACCAGCTGGAAAAATAGTTTGATATCCAAAAA
ATAAGTTGTCTAAGTCTAAGAATTTCCTATCTGTTCTGAGGGAATTTCAA
AAAAGTCAAAAAGTTTTTGCGATCTGTTCTTTTCCTTCTGAATGTGGTTG
CCTGGAGTGGCAGCTGAAAATTCTCCATCTGTTCTACAAACAAGTACAAA
ACATCTGCATNGTTAAGGGTAAATATTTGAGCCCGACAAAATTTAGGAGA
AATTTTGAAATTTCATCAGGCCACTGCAATCAAGGTCATAATATTTGAGA
AAAAAGGGAAATCCACCGGGAAGTTTTTGAACCACAATCGATTTGAAAGT
GCTCTAAAGTAGGTTGGAAGGGTAGAGTTTTAACTCTGAGTTTTAGGACC
TGCCCGGGGGGTACTTAGGCAAAATGGGTGCCGGGTATGTGCGAGCCATA
AGCTGAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACCATTCACAAAGAACATAAGTCTTTCATTCCATTCGTGCTTCAAAACAA
CGCCTTCATCAAATCCATCCACTTCACTAGACTATCAATCAACAAGTGAC
GATGAAGGCATCTACCTACTTCAAAACGTTGTAATCAACCACAAGGTATT
CACAGTTTTCTTCGACAGTGGTTGCAGTGACTTTATCGTGAAACACAGTG
CAATCAAGAAGCTTGGTACAAATGTCACTCAAGAGTCATCAGAGATCACA
TCAATTGGTGGAGTTGGCACCTCGACACAAACAACACTTGGAACATACAA
CGTCCAGATACCCATGATGAATGGCCANNNNNNNNNNNNNNNNNNNNNNN
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AGTGAGCACGCATTCAGTCTCAGCCTCTGCTCACATTTTGATTTTGGATT
TGATTTATTCATGGTTCATTTTGTTTGTTTACACATTTTGACCTTTTCAT
TTACCTACTGGCATCATTTCACAGCATCTACATTTGGCCAGCTGGTAAGT
TTCTTTCACTGACACACCTTAAGTTAGGACTTTTTACTTTTGTGACTTAG
ATATTATTCAACTCAGACATTTTATTTATTNNNNNNNNNNNNNNNNNNNN
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TGTCAAACTTTATACTTACGCTATTTTCATTTTACATTATTTAGTTTGAC
GGTTTATCAATATCAATACAAATCGTACAAAACTCGCCTGATTAATGCCT
GCCAGCACCGGTAACCCCACAAACGTAGTGGTCTAAGAAAACGGCTATTC
TTTTTTAGAATCAACCTTACAATCTAGTTTTTATATTTATAAAAACTAGA
TTGCTCACAAGCATGGGCTTCCGAGTTCGATCCCGCCGGGTGACAAATTT
TCCAATTCTTCAAATTTCTTTTTTGGACCTACCCCGGTGGGCTGTAGGTC
CTATAAATTAACCTTCGTTCGTCCGTTCGTTCGNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCGCTA
AACGATATATTTTCTGACTGATTTTTTTCTCCTCGCATTGCTATCTAACT
TTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTAATTCTCTTTC
TATTATAGAACACACGTCAGCAATCTAGTTTTTATAAATATAAAAACTAG
ATTGTAAGGTTGATTCTAAAAAAGAATAGCCGTTTTCTTAGACCACCACG
TTAAGAGTACCTTTTCTCATTCCTCAAAAGTCTCTCAAAGGGGTACAAAT
TCAAAAGTTAGTCTCTGAAAGGGTCCCAAAATCACGAAAATCCAAAATTT
CTCTCTCAAAGGGTCACGATTTCCAAAAATTTTGACCAAAATTTGGTGAA
AATCAAACCAAAATTTGGAAAAAATAGACCAAAATTTAGGAAAAAGTCTC
TCAAAGGGGTACAAATTCAAAAGTTAGTCTCTGAAAGGGTCCCAAAAACA
CGAAAATCCAAAATTTCTCTCTCAAAGGGGCACGATTTCCAAAAATTTTG
ACCCAAATTTGGTGAAAATCAAACCAAAATTGGGAAAAAATAGACCAAAA
TTTAGGAAAAAGTCTCTCAAAAGGTCCCAAAATCACCAAAATTTTGTCTC
TCAAAGGGTCGATTTTCGATTTTCGGCTCGGACATACCCGTCACCTTGCA
AACCTAGTACCCCCCCCCCGGAGGACCTGCCTTAGGATCTGAGGATCCAA
AAGTTCAAAAATAGTCCAATAAAACTCAGAATATAGCCTGGAAGTCTGCC
AACCCCTCCCAAATTGAAATATTCGATTAAATTAAAGAAAGAGCCCAAAA
TCAACTTTCTGGCTTTCTGGCCAGAACTTTAAATTCTGAAAAACGTTAAA
ATAACCAAAATTCTCAATATATTATGACCTTTATTGTGGAAATTGTGGAT
CTGTTCGAACTGTTAGCTGGAAATTAAGTTTCTGTTCTTAAAAGTCCTTC
AATGTCGAGCTGGAATTTAGCGATCTGTTCTTATAAGATTTTGTCAGCCC
TGGTAGATAAGGAACAGTTCAGTATCGCTTTTTTTTGTATTACGGAAAAC
GCGAATTAGAGCTACGCTTTCGTGTTTTCACTTTCGATTTTGCCTAATTT
CATAGCAAACCCATAGCAACGAGGTGCACAGGCATAGTTACGAGTGACTG
CGCAAAAATTCCAACATAAGATTGATTTTAAAACTGTTTCGTTAGATAAA
GCATTTAAAAATACACCTTCTCTATGCTGGATTTTTTTCTCAAGTTAATA
AATCTCAAGATATTGTTCAAAAGATTTCCCCTTATTTCACAGATAAGAAA
AAGTAAAGCTTACTATACTAACGCGAGCGCTCAAAATGAAGAATCACGTG
ACATTTTACTCGTTAATTAGATTGTGCGTATACGTCAATAATAAAATAAG
AAGTTCGTGAGGAATTACTGGCTGATTGGAATAATTTCACAGTTTATAAT
TCATTAAAGGAGATCTAACGGCAAAAATTTCTTCATCCTTATTTTTTGAC
AAAGTACAGGCCTAATTAAATAAAAAACATTGCAAAAAGAACGAGTGCAA
AATCTTTCATATTGATTGAATTATCATTGTTTAAAATATGTCTTTATTTG
AAAGTAAGAGGGTTTCGTGACGTCAGCGCTGAACTTTCATTTCGATAGAG
AAACTGTTTGTAGACAAAAATTATGGAAAGAAGATGTTTTATAGCAAAAT
ATAATTTTGATGTACGTAGAATGTAGAAGTAGTAGAATGGTTAAAAATGT
CTGAGAAATCATTTTCTTCACTTGAAGATTCACTCGACGACATTTTGCTC
TGAATCTAGAAGTCTAAATGAATGTGCTAAATGATTTTATCAAGAAATTT
TTCTTTATAAAACTCACTAAAAGTTTAGAGAAAAAGAGAAAAAATCTTGT
TTAACAAACAAGTTGTTCAGCAATGACGTCACACGCTTAAATCTTTAAAG
GGTTTAATTTCCTATTGAGTTAAAATTGTTCAACATAATATAGCTCATTT
TAATCCCCACAATATAAAGTTTCCATAATTTCCAAAAAAAATGCAGCAAA
ATTTTTGCAGTAGATCTCCTTTAAAAGCAAAAATGACATAATCAAAGAAA
TTGTGCATATTAATATATTAAATCTTTCAGGAAACAGAACACAAAATTAG
AATGTGTTCGTAGCTTTAGCGAAGAAGCAATTATAAAACACAAACTTGTT
ACCCCAAGAGAATCGACAAACTATGTTATGATTTCAACAATGATAGCAAG
ACTACTAATGTTAGCGGAACTCTCTAGGGAGTCTTGTTGTGATGTAACAG
TAATTGTCTATGGAAAATATCATTGCAAACTAATGGTAATCTGATTGAAA
AAAATGCAGAAAATGTCATATCTAGATCAATTTTTGGGTGTGTTAGAAGT
TTATTTCGAAATCTGCAACAATTAAACAAAAGTGGTCTCTTTTACTTATT
GCTTCCCGGCACTCCTTTGCAGCTGTTTATCAAATTTCCACCAATGAGGT
TGCTGCGTTTCAATCGGCTCTTCTTTCTGGCACCCGTGGCCCACCCTTCA
TATATTTGTTTCAATTTGTGGCTTAGGTTTTTTCTCATTTCAATTTACTG
AAGAATTTGATGGGAGAGTTAGATTGTCAACAAAGTGCCATAAAAAATCA
TTGAATAAAAGAAAAACTTAGTCTTTAAATATTTTCATTTTGAAAAATAG
GTGCAAAAAAGTGAAACATAGAAAAAATTCATTTTTCATTGCATTTAAAA
CGAAATGGGGGATTTGGAAAATTTTCTATGTTTAGTTTTTTGCACAAACC
CCTGTAACTATGAGCGAGCACCCCGTTGCTAAGATGTTGGCTTGAAATCA
AAAGTGAAACCACTCAAAACGAAAGTAAAATTAGCCCATACTCGAAATCC
CGTAATCTTGATATACTAGTTTAAGTCTATACTGTAATTCTGATTCAATA
TTTTAAATATAAGATAATGTGATAATATTAATATGATAGTCTCCCTTATA
AAAGCTAATGACCCACTCTCCTTCTTGTTGTTGCTCCTTTATTTATACTG
TACTATAAGCGTCAAATTTGACATTTTCAACTTTAATTGTTTTCTATTTA
TAGATGGACAATCAGTGACTTCTTTTCCCATACTGATATTGCTTCTTTTA
TCATAGCAGGATTTATACAAGCAAAACTCATCAAAATGGCTTCTAGGTGG
CGAACATGGGATTTACATTTTGCAACAGACATTTTGGGAAATAAGTTGCC
TTTTGATTCTCTGGATAGTATACCTGTTGGTTCAAGAGGGAAATTTCGCT
TCAATATACAACCTACTATGTTGAAGATACCTCTTCTTCAAGATTTTGGA
AAGTTAGATGGTAAAGTTGGGGGTAGAGGGAAACGACTTTGTGAGCAGAA
TGAATCAAAAGATGACAAATTGAATAAAGTAAACAAGACAAGTCTCGTGG
ATAATGCTGTTTATCGTAAAGAGATGCGTCAACAATGGCATGAAAAAGAA
TTTCCATCTTTATCAGAGACACATACACAATCAAATGATGATAAATCTAC
TCAAGAAAAAGTCAAAAATACAAAGAATGTAAATCAACAGTTTGAAGATG
CAGAAATAAGCAAAACAATTCAAGACTTTTCTAATCAAATCTTTATAAAT
GAAGATATTTTTTCAGATCCAAGTGTGAAAGCAGAAAACACTTCAGATCA
AAACACTACTAAAGAACAAAATGTCCCTGATGAATGGGAGGAAAATCTAC
CAGCTCAAAGTGATACAGATATAAAAGATACTCAAGATGCTGAAAAATCC
TTAAACGATTCAGAAAAGGAAAGTTCGTTCACCAGCGCCCTAAAAGGTGA
AGAAGATAAAAGTTTTACAGACAATGATTTTTTGCAGTCTCTTGATGAAC
CAGAATATTACATTCTCATTGAAGGATTAACAAAGGAGGTTGATGAGGAA
AATTTTAAAGAACTCATCTCTTCATTTGGAGAAATTGAACTGTTCCTGGC
TCAAGTATGCTCAGATGAAACACACTTAAATGTTATTGTGAAGATGGTGG
ATAGTTCCCATTGTGATTGGGTTATTTCATGTCTCGATGGTGACATTTAT
GAAGATGGTGGAGAACGCTTATCTGCAAAAGCTGTTGTGGATATGGTATA
GAGATATACCGCACTTTTTGTAAATATTGCTCTTGATTTTTTATTTTGTT
ACTTTTGTTGCTAAGAAACTTGAAAAAATACAAGCTCTTTGTTTTTTATA
TCTGATTTCACTTATAAAACAACCATAACCTGAAATTAACCTTTTTCTTT
ACTTATGTTTCAGATATTTAGGTATACAATAGATAGACAATATTGAGCTG
CAATTTCAAATGAGATATCTAAATCTTCTCAGATTTTCCTGTAGAAGATT
TGCCAATAAGTTCCTTCCAAACCACTTACATCAACATACTGGAAAGTGGA
AAGTTCCATTATATACAACTGGTATCTTGAGTGGTATTTATCTTTCAACA
AATTACATAAATGGTAACTTTGATCCTGTCAATAATCTAAAACTGGCTCA
CGTTGTGATGGCTGAAAACAATGAGAATGAAAACATAAAACCTAGAAAAA
CAAAAACAATGAATTTTCTTGCTGATGCTGTAGAGATTGCTGCACCTGCT
GTAGTACATGTGGATGTTGTATCCCAACACCGTAGTTACTTTCATGAGAC
AAATAGCAGTGGCTCTGGTTTCATAGTTACTGAAGGTGGAATAGTGCTCA
CTAATGCTCACGTCGTTGGAAATGCATCCAAAGTCAATGTGAGGTTATCA
AATGGTAAAACATACAAAGGATCTGTGATTGATGTTGATCGAGAAACTGA
CTTGGCTGCTGTCAAATTAGACAATAAGTCAGATGTAATAATTGATTAAT
TTTACTTTAGTACGCTTTTAGCAATTTTCTACTCGTTTCATTTTCTTGTA
ACTTGTTTTGTGGAATATTCTCTCTTATTTTAGTGATTTTACTTAGTGAA
CTTACTCTTACATACGATTCTAGGAAAGCTTACTTACTACCAACGCTCTA
ATTTTACTTTTCTTTATACTTGCTAGATCAAATTTCCTTTCTTAAAACTT
GGTCCATCAGAAGACATTCGTGCAGGTGAATTTGTAGCAGCTTTGGGTAG
CCCTTTACGGTTGAGCAACACAGTTACAGCTGGCATTGTTAGCTCATTGC
AAAGAGGTAGTGCTGAACTTGGCATGAGAAAAGGAATGTATTATATCCAA
ACTGATGCTGCTATAAATGTAAAGTTTAAATGTTTAATTTTTCTTTTTTC
AACAGTAATACTCCTTGCTGATTGACATAACTTGAACTGTGATTCCAATT
GGTTTGGTTCAGCTACTTTTCGAGTTCAATTGGCACCACAACAGCATATA
ATTTTAGCACTTCTATATTTGCTTCACTTTCAGGTTGGCAACTCTGGTGG
TCCACTGATAAATCTGGTAATATTTTCTAATTTTCTAAATTTATTTTCCT
GAAATTTTCCTGAGGAAAAGTTAGGAAAAATAAGGGAAAGATTTTTCAAT
ATCATTTTGATCTTGCAGCTATTATCAATTTTACATTTTAAAGTTAATGA
GATTTTTTGAATTGACTCTTTTTAAATTTATTTAGATGATAATTGATGTA
GCTGCAAGATCCATTTTCCCTGATGATTTATAAGGTAACTTGACTCTAAA
TTTTGCTAAAAATGAGATTCCAAATATGTATGTCATTTGAAACTTTGTAC
TTTGAATTGTAACAGACTATGAATGAAGCAAATTTTAACCTTTTCAACCT
TTTTTTGTATTCCTTCAGGACGGGGAGGTAATTGGTATCAATTGCATTAC
AGTTCAACAAGCTGCTGGTATCTCATTTGCAATTCCTTCAGATATTGTTG
CTGAATTCCTTGATGGTGCCGTCAAGAGGGAGAAAGATTTTGTCAAGAAT
GGAGGATTTTTCAGGAAAGCAAAACGGAATGAGAAGTTTTATATTGGTAT
GTTATTACACATAATCTTTTTAACTTATTCAAATCAAAACCCTATGATTC
GATTGAATTGAGTTGGTATCAAAATACCGGGTGTGCCACAAAAAAGTTTC
TCTCTTTAAAACTAACTTTTTCAAAATCTAAAAGTTTTAAACAGACTAAT
CTTATAAAATTAGAAAGAAGAAAGATAAACTTAAATTTTGATGGGTCGTT
TATTAAATTTGATTCATTAGATCAAAAGTTATGCTCAATTGAATGAAAAA
GTTACTTTCAGAAAGTGCTCGAAAACGTTGAAAATCGACATATCAAATTT
TTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTATGAATTAACCGTTG
TCTGTTCAACCGTCCGTCCGTTCGACTGCTACCAGCTCTTCTCGAGATTG
GGTCATTAGTTCTTTCTGATTTTTAGCACAAAGATGCAAAATGGCAATGG
CTAAAATGTGACGGAGCCCGGTTTTTGAAAAAAAAAATTTTGCCAGAAAA
ACTGGTTTTTTGGCATTTTCTCGTGATTTTATCATTAGTTTTTTCTGATT
TTTTGCTCAAAGATGTGTATTAACAATGCCCAAAACATGGTTGAGTCCGA
TTTTTGAAAAAAAAAATTTTCCGGCCGAACATGCCGGAAATCGCCGTTTT
TCTAGATTTTCATTGGACTTTTTCCTCGTAATTGGTTGTTTTTTCATTGA
AAAACATTATTAATACCAATGCCCACCAATAAGCATGTTTCAATTTTCAA
TAAAATTGCTGGAACTATTTAAAAATTGCCGGAACAACCTATTTTCGCCG
GAAAGACAGTATTTCTTGAATTTCTCGAGTTGTACTTTATATTTTTTTTA
TGAAAATTTGCACACTGATGCAAATTGACAATACCTAAAATGTGACGGAG
CCTGATTTTCGAAAAACATTTTTTCCTGCCGAAAATGCCAGAAATATGCC
GGAAAAACCGGTTTTTTTGACATTTTCTCAAATTTTCATCTTTACTTTTT
TCTGATTTTTTGCAGAGAGATGCATATTCGCAATGCTTAAAACATGGCCA
AGTTTGATTTTTGAGAAAAAGTTTTTTCTGGTGGATAATGCCGGAATTCA
TTGTTTTTGCAGATTTTCATTGGATTTTTTCCTTATTATTTCTATGTTTT
TCACACAAAAACATTATTGATAACAATGCTCACCATCAAGCATGATTCAA
TTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTTATGCATTTTC
GCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTCGCATT
GCTATCTAACTTTCATCACCAGGTAGGTCCATTCGGCATCTAGCTTGTTA
TCTTAAAATTTGCAATTGCAATAGCCTTTACATGCTCTTCGACGAATTTT
CTTCCTTTTATTAAAATTCAACCTTCCTTTATATAAAAAAGGTCATTTAG
ACAGTTAATTATCATTTTTAATGACCGAAACAAAAAAATTGATGCATCAT
GTAATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTTTGAG
CGCTTTCAGAAGTTAACTTTTTGATTCAATTGAGCATAATTTTTTGATCT
AATGAATCGAATTTAATAAATGACCCATCAAAATTTAAGTCTATCTTTCT
TCTTTACAATGAAATAAGAATGCTTCTTTTAGAATTTTCAGATTTCGAGA
AAATTAGTTTTAAAGACAGAAACTTTTTTGTGGCTCACCTGGTATATAAT
TAAATAATTTATAAGTCATTTCGTCTGGACCATCCTCTGCCCTGACTACA
TGGGCATTAGTAATTTTTGATAACATGAAGTAAATTATTGGAAATGCATC
ATTTGTTCAAATAATTCCCACCTCCTACATACAACATTTGATAAGGATAA
AAAATTTCATCAATCCTTTCTTTTGCCACAGGAATTACGATGCTGACACT
TTCACCAGAAATTATTGAAGAGCTAAAGCGAAGAAACCCCAACTTCTTTG
AAAATGTGGAAGGTGGTGTTTTGGTCACTAAAGTTAATCGTGGATCTCCT
TCAGAACGGTATTGAATCTGTCTTTCCTCACGTCAAAACAAACAAAAGGA
TTACCCCAAACTTTAGTTTTCCTGACTTTATTATTTGATTTGTTCGAATT
AAAATGATCGAACATGGTCAATATTTTCTGTGCCTGTTTTTCTTCTGTAT
GATTAATTAATGATAATTTAGCTTTCAACTCATCTTTTAAGCTGTGGATT
GGTTGGTGGTGATGTCATTTTATCTATCAATAACAAATCTGTGTCTTCGA
CAAGAGATGTGTACACAGAGGTGCGCAAAGGTGATACCATGATTATGAAA
GTCAAACGCGGTGAAAACATTGTTACATTGAATGTTGAGCCTGAAATCAC
AAGTAGACTATGATGTCAATTTGATTAGCCTGGATAACCTAGGTTTGTTG
GATTACATCCTTAATATAGGCTACTCTCAAAAGTGAAATGATACCTTGTT
CAGTTGCCTAAAGGATGCAAGGCAAGTACATTAATTGTTATTTTTCTAAA
TTGTACATAGAAGATATATAATTTTTTTTAATCTATATTTTACAGGGTGT
TGATATCAACACAAATCAAAAAATGAAAAGAAAATGTAACTTGGAGTACT
AATTCTCGTTTGACTTGACCTGTGTCAAGG

Coding sequence (CDS) from alignment at sc0000212:34618..55147-

>TCONS_00015533 ID=TCONS_00015533|Name=TCONS_00015533|organism=Clytia hemisphaerica|type=CDS|length=3267bp|location=Sequence derived from alignment at sc0000212:34618..55147- (Clytia hemisphaerica)
AAGATTTGCCAATAAGATTTATACAAGCAAAACTCATCAAAATGGCTTCT
AGGTGGCGAACATGGGATTTACATTTTGCAACAGACATTTTGGGAAATAA
GTTGCCTTTTGATTCTCTGGATAGTATACCTGTTGGTTCAAGAGGGAAAT
TTCGCTTCAATATACAACCTACTATGTTGAAGATACCTCTTCTTCAAGAT
TTTGGAAAGTTAGATGGTAAAGTTGGGGGTAGAGGGAAACGACTTTGTGA
GCAGAATGAATCAAAAGATGACAAATTGAATAAAGTAAACAAGACAAGTC
TCGTGGATAATGCTGTTTATCGTAAAGAGATGCGTCAACAATGGCATGAA
AAAGAATTTCCATCTTTATCAGAGACACATACACAATCAAATGATGATAA
ATCTACTCAAGAAAAAGTCAAAAATACAAAGAATGTAAATCAACAGTTTG
AAGATGCAGAAATAAGCAAAACAATTCAAGACTTTTCTAATCAAATCTTT
ATAAATGAAGATATTTTTTCAGATCCAAGTGTGAAAGCAGAAAACACTTC
AGATCAAAACACTACTAAAGAACAAAATGTCCCTGATGAATGGGAGGAAA
ATCTACCAGCTCAAAGTGATACAGATATAAAAGATACTCAAGATGCTGAA
AAATCCTTAAACGATTCAGAAAAGGAAAGTTCGTTCACCAGCGCCCTAAA
AGGTGAAGAAGATAAAAGTTTTACAGACAATGATTTTTTGCAGTCTCTTG
ATGAACCAGAATATTACATTCTCATTGAAGGATTAACAAAGGAGGTTGAT
GAGGAAAATTTTAAAGAACTCATCTCTTCATTTGGAGAAATTGAACTGTT
CCTGGCTCAAGTATGCTCAGATGAAACACACTTAAATGTTATTGTGAAGA
TGGTGGATAGTTCCCATTGTGATTGGGTTATTTCATGTCTCGATGGTGAC
ATTTATGAAGATGGTGGAGAACGCTTATCTGCAAAAGCTGTTGTGGATAT
GGCGTGGTCCACGTTCGAATATTCGACTTTTTTCCTAGAATTTCTAACAG
TAAATTTGACAGTGTGTTTGAAAAAAGGGATTCATACAGAAGATTTGCCA
ATAAGATTTATACAAGCAAAACTCATCAAAATGGCTTCTAGGTGGCGAAC
ATGGGATTTACATTTTGCAACAGACATTTTGGGAAATAAGTTGCCTTTTG
ATTCTCTGGATAGTATACCTGTTGGTTCAAGAGGGAAATTTCGCTTCAAT
ATACAACCTACTATGTTGAAGATACCTCTTCTTCAAGATTTTGGAAAGTT
AGATGGTAAAGTTGGGGGTAGAGGGAAACGACTTTGTGAGCAGAATGAAT
CAAAAGATGACAAATTGAATAAAGTAAACAAGACAAGTCTCGTGGATAAT
GCTGTTTATCGTAAAGAGATGCGTCAACAATGGCATGAAAAAGAATTTCC
ATCTTTATCAGAGACACATACACAATCAAATGATGATAAATCTACTCAAG
AAAAAGTCAAAAATACAAAGAATGTAAATCAACAGTTTGAAGATGCAGAA
ATAAGCAAAACAATTCAAGACTTTTCTAATCAAATCTTTATAAATGAAGA
TATTTTTTCAGATCCAAGTGTGAAAGCAGAAAACACTTCAGATCAAAACA
CTACTAAAGAACAAAATGTCCCTGATGAATGGGAGGAAAATCTACCAGCT
CAAAGTGATACAGATATAAAAGATACTCAAGATGCTGAAAAATCCTTAAA
CGATTCAGAAAAGGAAAGTTCGTTCACCAGCGCCCTAAAAGGTGAAGAAG
ATAAAAGTTTTACAGACAATGATTTTTTGCAGTCTCTTGATGAACCAGAA
TATTACATTCTCATTGAAGGATTAACAAAGGAGGTTGATGAGGAAAATTT
TAAAGAACTCATCTCTTCATTTGGAGAAATTGAACTGTTCCTGGCTCAAG
TATGCTCAGATGAAACACACTTAAATGTTATTGTGAAGATGGTGGATAGT
TCCCATTGTGATTGGGTTATTTCATGTCTCGATGGTGACATTTATGAAGA
TGGTGGAGAACGCTTATCTGCAAAAGCTGTTGTGGATATGGCGTGGTCCA
CGTTCGAATATTCGACTTTTTTCCTAGAATTTCTAACAGTAAATTTGACA
GTGTGTTTGAAAAAAGGGATTCATACAGAAGATTTGCCAATAAGATTTAT
ACAAGCAAAACTCATCAAAATGGCTTCTAGGTGGCGAACATGGGATTTAC
ATTTTGCAACAGACATTTTGGGAAATAAGTTGCCTTTTGATTCTCTGGAT
AGTATACCTGTTGGTTCAAGAGGGAAATTTCGCTTCAATATACAACCTAC
TATGTTGAAGATACCTCTTCTTCAAGATTTTGGAAAGTTAGATGGTAAAG
TTGGGGGTAGAGGGAAACGACTTTGTGAGCAGAATGAATCAAAAGATGAC
AAATTGAATAAAGTAAACAAGACAAGTCTCGTGGATAATGCTGTTTATCG
TAAAGAGATGCGTCAACAATGGCATGAAAAAGAATTTCCATCTTTATCAG
AGACACATACACAATCAAATGATGATAAATCTACTCAAGAAAAAGTCAAA
AATACAAAGAATGTAAATCAACAGTTTGAAGATGCAGAAATAAGCAAAAC
AATTCAAGACTTTTCTAATCAAATCTTTATAAATGAAGATATTTTTTCAG
ATCCAAGTGTGAAAGCAGAAAACACTTCAGATCAAAACACTACTAAAGAA
CAAAATGTCCCTGATGAATGGGAGGAAAATCTACCAGCTCAAAGTGATAC
AGATATAAAAGATACTCAAGATGCTGAAAAATCCTTAAACGATTCAGAAA
AGGAAAGTTCGTTCACCAGCGCCCTAAAAGGTGAAGAAGATAAAAGTTTT
ACAGACAATGATTTTTTGCAGTCTCTTGATGAACCAGAATATTACATTCT
CATTGAAGGATTAACAAAGGAGGTTGATGAGGAAAATTTTAAAGAACTCA
TCTCTTCATTTGGAGAAATTGAACTGTTCCTGGCTCAAGTATGCTCAGAT
GAAACACACTTAAATGTTATTGTGAAGATGGTGGATAGTTCCCATTGTGA
TTGGGTTATTTCATGTCTCGATGGTGACATTTATGAAGATGGTGGAGAAC
GCTTATCTGCAAAAGCTGTTGTGGATATGGCGTGGTCCACGTTCGAATAT
TCGACTTTTTTCCTAGAATTTCTAACAGTAAATTTGACAGTGTGTTTGAA
AAAAGGGATTCATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008665XLOC_008665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015533-exon-sc0000212-1575043694:55060..55147TCONS_00015533-exon-sc0000212-1575043694:55060..55147Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:39353..40338TCONS_00015533-exon-sc0000212-1575043694:39353..40338Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:38614..39103TCONS_00015533-exon-sc0000212-1575043694:38614..39103Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:38230..38421TCONS_00015533-exon-sc0000212-1575043694:38230..38421Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:38032..38064TCONS_00015533-exon-sc0000212-1575043694:38032..38064Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:37502..37679TCONS_00015533-exon-sc0000212-1575043694:37502..37679Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:35240..35366TCONS_00015533-exon-sc0000212-1575043694:35240..35366Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1575043694:34618..35056TCONS_00015533-exon-sc0000212-1575043694:34618..35056Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:55060..55147TCONS_00015533-exon-sc0000212-1510915933:55060..55147Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:39353..40338TCONS_00015533-exon-sc0000212-1510915933:39353..40338Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:38614..39103TCONS_00015533-exon-sc0000212-1510915933:38614..39103Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:38230..38421TCONS_00015533-exon-sc0000212-1510915933:38230..38421Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:38032..38064TCONS_00015533-exon-sc0000212-1510915933:38032..38064Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:37502..37679TCONS_00015533-exon-sc0000212-1510915933:37502..37679Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:35240..35366TCONS_00015533-exon-sc0000212-1510915933:35240..35366Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1510915933:34618..35056TCONS_00015533-exon-sc0000212-1510915933:34618..35056Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:55060..55147TCONS_00015533-exon-sc0000212-1491911889:55060..55147Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:39353..40338TCONS_00015533-exon-sc0000212-1491911889:39353..40338Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:38614..39103TCONS_00015533-exon-sc0000212-1491911889:38614..39103Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:38230..38421TCONS_00015533-exon-sc0000212-1491911889:38230..38421Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:38032..38064TCONS_00015533-exon-sc0000212-1491911889:38032..38064Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:37502..37679TCONS_00015533-exon-sc0000212-1491911889:37502..37679Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:35240..35366TCONS_00015533-exon-sc0000212-1491911889:35240..35366Clytia hemisphaericaexon
TCONS_00015533-exon-sc0000212-1491911889:34618..35056TCONS_00015533-exon-sc0000212-1491911889:34618..35056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015533-proteinTCONS_00015533-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:34618..55147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131652	3.47742	0.0217407	0.0147293	5.76561	2.90545	6.15121	4.93743	0.00282678	0.0173026	0.00109841	0.0281689	0.000111794	0.683178	0.641557	0.0291636	0.035135	1.75108	0	1.74431	0.00139089	5.33462e-06	0.00237189	0.089187	9.62923	7.75898	0.0220708	5.72234e-08	0.224855	0.0555556
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00015533 vs. Swiss-Prot (Human)
Match: HTRA2 (Serine protease HTRA2, mitochondrial OS=Homo sapiens GN=HTRA2 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 2.435e-79
Identity = 154/323 (47.68%), Postives = 212/323 (65.63%), Query Frame = 2 
Query: 1292 NFLADAVEIAAPAVVHVDVVSQHRSYFHETN-SSGSGFIVTEGGIVLTNAHVVGNASKVNVRLSNGKTYKGSVIDVDRETDLAAVKLDNKSDIKFPFLKLGPSEDIRAGEFVAALGSPLRLSNTVTAGIVSSLQRGSAELGM-RKGMYYIQTDAAINVGNSGGPLINLDGEVIGINCITVQQAAGISFAIPSDIVAEFLDGAVKREKDFVKNGGFFRKAKRNEKFYIGITMLTLSPEIIEELKRRNPNFFENVEGGVLVTKVNRGSPSERCGLVGGDVILSINNKSVSSTRDVYTEVRKGDTMIMKVKRGENIVTLNVEPEIT 2254
            NF+AD VE  APAVV+++++ +H     E   S+GSGF+V   G+++TNAHVV +  +V VRL +G TY+  V  VD   D+A +++  K  +  P L LG S D+R GEFV A+GSP  L NT+T+GIVSS QR + +LG+ +  + YIQTDAAI+ GNSGGPL+NLDGEVIG+N + V   AGISFAIPSD + EFL    K+      +G        +++ YIG+ MLTLSP I+ EL+ R P+F  +V+ GVL+ KV  GSP+ R GL  GDVIL+I  + V +  DVY  VR    + ++++RG   +TL V PE+T
Sbjct:  148 NFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPL--PTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNSGGPLVNLDGEVIGVNTMKV--TAGISFAIPSDRLREFLHRGEKKNSSSGISG--------SQRRYIGVMMLTLSPSILAELQLREPSF-PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRRGRETLTLYVTPEVT 457
The following BLAST results are available for this feature:
BLAST of TCONS_00015533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HTRA22.435e-7947.68Serine protease HTRA2, mitochondrial OS=Homo sapie... [more]
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