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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015517 ID=TCONS_00015517|Name=TCONS_00015517|organism=Clytia hemisphaerica|type=transcript|length=662bp
GGCGTGGAATCTTGCTGGATCATTAGCAATTACTTGTTGGAGTGGTGGTT
TAGCTGCAGTCGTGTTCTTGATATTGAAATACACAATCGGAATCCGTATG
TCATTGGATCACGAGATAAAAGGATCAGACGAAGTCGATCATAACATCAA
AGACGCATTACCACCCACTGAACGTAAACGAAAACATACTCTGGGTAGAT
ATGTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATTTAGCAGTTCTAAT
GGAAGTAAGGGAATGAATATGGAGCCtgtacgaaaaaataataatgtcAT
TTCTGAAGTACCAGAGGTCTGAGGAGACTGTCAACCAATAGATTTTCTGA
TTACATACACgtgtttcatttaaaaatatctAGCACTCTtataaattcat
gatattcatgacgtaatattttctacggaaataccccggttttagccagt
ggTGGCAAATTTACAGTAGACAAAAGTTgcataaaatttgccactaatGG
CAAAAACTGGGGTCTTTCCGTAAAAAACCGAATATCATGCATAGAAGAAC
GGCGAAAGTGATCTAAAGGTCAAATAGGAGTTAAAATCCACTCTCTATGG
CATGGATATGGGTAtcctactcttgtctcccgaatagacggggggtccAA
ATAAGCAGGGgc Run BLAST on NCBI transcript from alignment at sc0000212:273774..276138+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015517 ID=TCONS_00015517|Name=TCONS_00015517|organism=Clytia hemisphaerica|type=transcript|length=2365bp|location=Sequence derived from alignment at sc0000212:273774..276138+ (Clytia hemisphaerica)
GGCGTGGAATCTTGCTGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTT
TAGCTACTATCGTGgtaagttattttaactacttgtacttattgttaaat
tgttaaattgttaatACTAGTCTCGTCACAAAACCTTTAGCCGTTCTCCC
AGATCTCTCCATAAAAATCAAAAGGGAACTATTGAAAACTCTTGAAATTA
ATTTAAGATCTTATATTGACAAGCCCAATATTTGAATAAACCATTAATTG
AAAGATTTAACTTTAATTTATCCATCTAATTCAATACCTATCCAATATTT
CTATCAATACAAAACTATCCTCTCTTTTCTTTTCAGTTCTTGACACTGAA
ATACACAATTGGAATCCGTATGTCTTTGGATCATGAATTGAAAGGCTCTG
ACGCGGTTGAGCATAACATCCATGAGGTACCCAAACCTCAAGAACGAAAC
CACGCCCTGGGAAAGACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCA
TGTTCAAATGGTCAAAGCAAATAATTTTGCTGCGTAAGAAAACTTTTCAG
ATTTTATATTTAAAGTATTTTGAACTTTCTTTGAGGGAGATCAATATTaa
aatttgtatatatttttttgtctaGAATTTTGTAATGTAATAGTTAAATT
TGAGAACATATCTTTTTAAGCATAAAACTTATTACTTTCTACAGGCCATT
AAGTTTTCAGACCTTCGGACCTATTGAAACAGTTTTCAATATCAGCCAAT
CAAAGTCTTTAATCTTGGTTTTTTAACCATTTGAAACCTTTACACTCAAA
AAATTATCTCTTATTCGTTGTTTGTCGTTTGTCTGACAAACATATCCTGN
ACATATCGAGTTCCCGGATagtttcaaaaaagatttcaattctCTAAGAC
AATAACTATTCTTTCCTGGTTTAACTATATGAAAAACATTCTGTTTTAGC
CAACGAACTTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTG
GAGTTCATTATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTT
GCCGAGAAAATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAA
GGGTGGCAATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAA
TTACTTGTTGGAGTGGTGGTTTAGCTGCAGTCGTGGTATGTATAGTCTTG
ATTTATTATATGCTATATATAAGGAACGAATACGACTGTAACTTTCCAAC
ACATATTTTGACCATGTCATTTGCAGTGTAGTCCtctctccctaattcga
attTAATGGGAGAATATTTATTCTTCAAATTAGAGGAATATTCCAATTAT
AGAGAACATTTTACACTAGTTTCTAGATCAGGGCTTATTGGCTTATTttc
tagttcgaattatagaggttcgaatgaGGGTGTATTGAGTGTACATGTTT
ATGGTTAGAAACAGTCCatcgcaattttttttttttgctcgtaTTCCAAA
TATTGGAAAATCAATAGGcaatgctatcgtccgtataatatattattatg
atataacatattttgtatattataaaacgtaatatgttgcgcGGCGGATA
TAGTCTGTTTTGAAACAGCTACCCCCAAAAAACTctcgtcttcacgtttg
ttcctcttagatgaaactcgtcgtAGACTATAGCATAGACTAGGAAGTCA
tataagaaaaatcaaagagacATGGTGGCAAACAATAATTTTAGCTATAt
ttcttctttcatttcagTTCTTGATATTGAAATACACAATCGGAATCCGT
ATGTCATTGGATCACGAGATAAAAGGATCAGACGAAGTCGATCATAACAT
CAAAGACGCATTACCACCCACTGAACGTAAACGAAAACATACTCTGGGTA
GATATGTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATTTAGCAGTTCT
AATGGAAGTAAGGGAATGAATATGGAGCCtgtacgaaaaaataataatgt
cATTTCTGAAGTACCAGAGGTCTGAGGAGACTGTCAACCAATAGATTTTC
TGATTACATACACgtgtttcatttaaaaatatctAGCACTCTtataaatt
catgatattcatgacgtaatattttctacggaaataccccggttttagcc
agtggTGGCAAATTTACAGTAGACAAAAGTTgcataaaatttgccactaa
tGGCAAAAACTGGGGTCTTTCCGTAAAAAACCGAATATCATGCATAGAAG
AACGGCGAAAGTGATCTAAAGGTCAAATAGGAGTTAAAATCCACTCTCTA
TGGCATGGATATGGGTAtcctactcttgtctcccgaatagacggggggtc
cAAATAAGCAGGGgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015517-exon-sc0000212-1491911889:273774..273793 | TCONS_00015517-exon-sc0000212-1491911889:273774..273793 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1510915933:273774..273793 | TCONS_00015517-exon-sc0000212-1510915933:273774..273793 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1575043694:273774..273793 | TCONS_00015517-exon-sc0000212-1575043694:273774..273793 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1491911889:274915..274958 | TCONS_00015517-exon-sc0000212-1491911889:274915..274958 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1510915933:274915..274958 | TCONS_00015517-exon-sc0000212-1510915933:274915..274958 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1575043694:274915..274958 | TCONS_00015517-exon-sc0000212-1575043694:274915..274958 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1491911889:275541..276138 | TCONS_00015517-exon-sc0000212-1491911889:275541..276138 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1510915933:275541..276138 | TCONS_00015517-exon-sc0000212-1510915933:275541..276138 | Clytia hemisphaerica | exon |
| TCONS_00015517-exon-sc0000212-1575043694:275541..276138 | TCONS_00015517-exon-sc0000212-1575043694:275541..276138 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:273774..276138 + |
Blast
The following BLAST results are available for this feature:
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