TCONS_00015487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015487
Unique NameTCONS_00015487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015487 ID=TCONS_00015487|Name=TCONS_00015487|organism=Clytia hemisphaerica|type=transcript|length=451bp
tgaagCCGGTAAACTATTCAACTTGATAGCAGAGGGAAAGAGCATCGATT
ATACACCTTACAAATCAATCGAGGAGGCACCATCTCAAAGATGCATTAGT
ATTTGTTCATTGGATCCCAAATGTTTTTCGTTCGACTATAAGCCTGCCAC
GAGGTACTACAATTGTAATTTCTACGATGTTCTCTTTCGTACTTATCAGA
ATCAATCGAGAGCATTGAGAACTCAGCCAGGAACAAAGTATTATTCAGTG
GATTTTCCCCAGGATTGTGCTCAATGGTACACATTAGGATACAGAAACGA
TGGAGTGTATCAGGTTATTATCTTGGGGAAATATAAACGAAAGGTTTATT
GTTTGATGGAGCAAGCTGGCGGCGGTTGGATGGCCTTTCAGCGTCGATTT
GATGGTAGTGTAAAATTCTTAGACCGAACCTGGTCCGAGTTCAAACATGG
C
Run BLAST on NCBI

protein sequence of TCONS_00015487-protein

>TCONS_00015487-protein ID=TCONS_00015487-protein|Name=TCONS_00015487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
EAGKLFNLIAEGKSIDYTPYKSIEEAPSQRCISICSLDPKCFSFDYKPAT
RYYNCNFYDVLFRTYQNQSRALRTQPGTKYYSVDFPQDCAQWYTLGYRND
GVYQVIILGKYKRKVYCLMEQAGGGWMAFQRRFDGSVKFLDRTWSEFKHG
Run BLAST on NCBI

transcript from alignment at sc0000211:309454..309904

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015487 ID=TCONS_00015487|Name=TCONS_00015487|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000211:309454..309904 (Clytia hemisphaerica)
GCCATGTTTGAACTCGGACCAGGTTCGGTCTAAGAATTTTACACTACCAT
CAAATCGACGCTGAAAGGCCATCCAACCGCCGCCAGCTTGCTCCATCAAA
CAATAAACCTTTCGTTTATATTTCCCCAAGATAATAACCTGATACACTCC
ATCGTTTCTGTATCCTAATGTGTACCATTGAGCACAATCCTGGGGAAAAT
CCACTGAATAATACTTTGTTCCTGGCTGAGTTCTCAATGCTCTCGATTGA
TTCTGATAAGTACGAAAGAGAACATCGTAGAAATTACAATTGTAGTACCT
CGTGGCAGGCTTATAGTCGAACGAAAAACATTTGGGATCCAATGAACAAA
TACTAATGCATCTTTGAGATGGTGCCTCCTCGATTGATTTGTAAGGTGTA
TAATCGATGCTCTTTCCCTCTGCTATCAAGTTGAATAGTTTACCGGcttc
a

Coding sequence (CDS) from alignment at sc0000211:309454..309904

>TCONS_00015487 ID=TCONS_00015487|Name=TCONS_00015487|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0000211:309454..309904 (Clytia hemisphaerica)
GCCATGTTTGAACTCGGACCAGGTTCGGTCTAAGAATTTTACACTACCAT
CAAATCGACGCTGAAAGGCCATCCAACCGCCGCCAGCTTGCTCCATCAAA
CAATAAACCTTTCGTTTATATTTCCCCAAGATAATAACCTGATACACTCC
ATCGTTTCTGTATCCTAATGTGTACCATTGAGCACAATCCTGGGGAAAAT
CCACTGAATAATACTTTGTTCCTGGCTGAGTTCTCAATGCTCTCGATTGA
TTCTGATAAGTACGAAAGAGAACATCGTAGAAATTACAATTGTAGTACCT
CGTGGCAGGCTTATAGTCGAACGAAAAACATTTGGGATCCAATGAACAAA
TACTAATGCATCTTTGAGATGGTGCCTCCTCGATTGATTTGTAAGGTGTA
TAATCGATGCTCTTTCCCTCTGCTATCAAGTTGAATAGTTTACCGGcttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008644XLOC_008644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015487-exon-sc0000211-1491911889:309454..309904TCONS_00015487-exon-sc0000211-1491911889:309454..309904Clytia hemisphaericaexon
TCONS_00015487-exon-sc0000211-1510915933:309454..309904TCONS_00015487-exon-sc0000211-1510915933:309454..309904Clytia hemisphaericaexon
TCONS_00015487-exon-sc0000211-1575043694:309454..309904TCONS_00015487-exon-sc0000211-1575043694:309454..309904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015487-proteinTCONS_00015487-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:309454..309904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.439807	0	1.99189	0.974375	1.97701	1.56226	3.39265	7.94038	9.26542	5.96789	3.11908	5.56527	5.75253	5.97406	1.66491	1.42936	0.330161	0.902412	3.74019	8.15384	0.566973	0.414825	0	0.458458	0.472201	0.280952	0.603062	0	0	0.165783
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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