TCONS_00015453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015453
Unique NameTCONS_00015453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015453 ID=TCONS_00015453|Name=TCONS_00015453|organism=Clytia hemisphaerica|type=transcript|length=1853bp
ATACGACAGTCCTTGGTTTGAAATCTTAAATTAAAGAGAAGGTTTTTTGG
ACTAAAACACGTAAAGACTACAACTATAAACAGCTATAAAAGGAGAAAAC
ATTGAACTACAGACGGAAGAAGCACAAGATGGGGCGCAAAGAGCTGAAAA
TCTATTTGGATAACGAAAAGGAATGTTATTTTGCCGGTGAACAATTGACA
GGTCACGTGACATTGGAGCTGAATGAGCCAACGAGCGTTTTGAGAATCAT
TCTCTACGTCAAAGGAAAAGGAATTTGCAAAGTGGGAAATTCCTGCAAAG
AAGTCTTTTACAAAAATGATGTCACACTGTACGGAACAATGCCGGGACAA
CACGCGGTAACACGACAGCACCCTGTCGGTAAACGAAATTATCGGTTTAA
TTTTCTGCTACCTACGGAATTACCGAGTTCGACGGTTGAAGGGGGAGGAT
TGATCAAGTACACACTGACAGcGAAAGTCGTATTCAAAGCACTCCTTTCA
AGTGATTGGCAAATGAAGAAAAACTTCCAAGTCAAACAAATCTTGGATGC
AAACATTCCCAATTACGATTTGGAACACGTGCACACAGTTAAAAGAGTGG
CCAGTATTTTCACCAGTCAAaagaaacttgaaaaagaagATTTGCTGATG
AGTTTACAGCGTGGTGTGTACTGCCCTGGAGAAACCATCAAGTTGAATTT
ACAATACAAGTACGTTGAAGCGAGAAAGATGGGTTTGGTCAAATGCCGGT
TAAACAAATATAaacgattgaataaaaaagaaaacaaaaatatttacaaa
aagacAGTCAAAGAAAAGAATGACAGTAAACGATGCGATGATAAAATTTA
CCAACGAAATATTTCGATAGAAGTTCCGGAAAAACTTACGCCCACCAACA
CCCTTACAAACGCCCTCTGCATTGAGTATGTTTTACACGTTAAAGTGGAA
GGGTACAAAGAGTGGAAATTACCCATTGTTATTGGAACAATACCCTTCGA
TGAAAACagacaacaacagcaacaacatcAGATAAACACGCAagGACAAC
CACAAGTTATAACCGAGCCGTCAACCTCAAGACCGACCGCCCCTCCTTCT
GCCCCTCCTTCTGCCCCTCCTTCTGCCCCTAGTGCACCAGTGGAAGTTCC
ATCGGGTAACAGCCTCATCTATCcgataattcatgatattggTGGTGAAA
TCCAATGTGAATTTTTCCACCCACCACCCTACGTTCCAGAAAACGAATTT
GATCTACCGCCTTCTTATGATGAAGTGTTACAAGAAAATCCAACGCCTGG
CTCGTCCGCCCCATCCGCCCCATCCGCCCCTCACGGACAACAATTGATCG
CTGCACAGTGATCATTAACAGCGTTTATGGAAGGTGGTAGTTCATTTGAT
TTACGACATCATCAGTGAATATGCTGGAATCTATTCAAACGATAATATGT
TGGTTCCTGAAAGATTTCGTGcatttttagcaaaatttgaGTGCTTTTGC
GCTTTCTTGCAGGCAAGAATCGTGAAAGTAGGATGTCTTTGGAATGATGT
AAAATAGTTCTGTTACTTTGAAAACGAATAGTATTCTACGAAATGATCGA
ATGTATCTGAGTTGCTATGGGTTGCTATGGGTTGCTATGGGTTGCTAGAA
GCTTCAGTTTTCATGCTGGTTCGTGAAAAAGTCCATAAAATCCTTTTCCG
TTAGTTTAATATGAAGCCTTTAttgtgaatttgaaaaatctttcttaaaa
tttatttagaataaaatttttgTATAGTATTTGTTTTTATTACTGAAAAA
CTCTcaagaaatatagaaaaaactttttactttgtaaaataataaaaaag
aac
Run BLAST on NCBI

transcript from alignment at sc0000211:58615..63536-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015453 ID=TCONS_00015453|Name=TCONS_00015453|organism=Clytia hemisphaerica|type=transcript|length=4922bp|location=Sequence derived from alignment at sc0000211:58615..63536- (Clytia hemisphaerica)
ATACGACAGTCCTTGGTTTGAAATCTTAAATTAAAGAGAAGGTTTTTTGG
GTAACTTTTTATCGCTCATGGGTAACAGAAAATGTGTTTGAATTTTTGGG
GCTTCAAAGGGCTTTCATTCATTTATTAGGGCACCATTTGGTCATTGACG
TTACAAAACTCCATTGGCTTAATGGAGAGACATAACTCAGTTTCTATCTT
ATCTGCTTTTCTAAGAATCTTGATTTGGGTAGGCGAGGTAACGATCAATA
TTCTCGCTAAATAAAAATATAAAGACAGCTGATTCTATAATCACAATATT
CTCCTATTTTTTACTTCATAATTTCTCGAAAGTGAAGATTTATGTAAATA
GAAATTGAAGATTTACTCTTCTCACTTTTCACTTCTTGATATTTGAGCTT
AGAGACATTAAGCTTTTTGGCACCGTTATCCCTCAGTTTTTCTCTCGTTT
GACGAAGTTGGAGTTGTTTTGAAGTGCGGTGAATCNTGACAACGTTATTC
CTCAGTTTTTCTCTCGTGTGACGAAGTTGGAGTTATTTTGAAGTGCGGTG
AATGTTGTTTACATTTGGACTTCAGTTTGACTTTTCTCCCCTCGCCACAG
ACTAAGATTATAACCAACTCTTGGCTTTTTTGTTTCTGCTTTACAACTCT
CCCCGTTTTAATTCCTTAGACTAAAACACGTAAAGACTACAACTATAAAC
AGCTATAAAAGGAGAAAACATTGAACTACAGACGGAAGAAGCACAAGATG
GGGCGCAAAGAGCTGAAAATCTATTTGGATAACGAAAAGGAATGTTATTT
TGCCGGTGAACAATTGACAGGTCACGTGACATTGGAGCTGAATGAGCCAA
CGAGCGTTTTGAGAATCATTCTCTACGTCAAAGGTATCGTAAATTTTTCC
TTTTAGCTAAGACTTTTATTTCCTTGATAAAAACACCCCTGTGTCACGTC
ACAGACCGGGTAGGACCCCCTACCCCATTGAAAATTAGGCTAAAATTTCG
TCCCTGATGTGGAAAATAACCTACAATTTAAGCTCCTCTGGGAAATTGAT
TTTGTTTTCATCCCCATTTGAAATTCGATGGAAAAATTACACTCCAGATT
CATCCCGACTTTTTGACCTGGGAATTTCTGTCCCCACTAAGGATTTCGAT
TGAAATTTTCATCCAATTGTGGGAAGAAGCTCCTGAAAAAGTGGTATATA
AGAAGACTGTGATGTTGTAGTAAACATCCCTGTCTGAGTGGCTGGAAACG
TATACATGTTGATGTGAAGAGTCAGATTCGCAGCCAAAACTTCCACCGGG
TTTCTTAAAATACTGTCTTCAAATGGTGTAGTTTGATAAAAGGTTCGATT
GATAGCATTCTAAATCTGAAATTTGATTTAAGGATATTTTTCGAAGCTTC
GAAAGTCCTATATACTATCTCGGCTGTTTTTTAAGTCCAATTACAGTGAG
ATTTAGATAACGGACATTTTACCGTAACAGAGAAAGTTAACTTAAATGAT
AGGTAGTCCACCTTTCACTTCGACACTGCTTCAAACATTTCCTTCATTTT
CATCAGGAAAAGGAATTTGCAAAGTGGGAAATTCCTGCAAAGAAGTCTTT
TACAAAAATGATGTCACACTGTACGGAACAATGCCGGGACAACACGCGGT
AACACGACAGCACCCTGTCGGTAAACGAAATTATCGGTTTAATTTTCTGC
TACCTACGGAATTACCGAGTTCGACGGTTGAAGGGGGAGGATTGATCAAG
TACACACTGACAGGTTTGTATTTCTTTAAGTATTTTTTGATGTTTTTACA
TTTCTTAATCTTACCAAAGCTTGCTATTCAGTAACGTAGACAGGAGGGGC
GAAAATTTGTGTAGTTAATTAATACCATGAATAGATAATTACAGTGTCAT
AAAAATCTGCTCTTCTACAACCAAGGGAATTAAGATTCATTTTTAGAAAC
TTTCCAGCTTTTTGGTGATATACTAAACTTAAACTAAAGCTAGAACTTCA
CTCACCAGGTAACAAGAAGTTTAAATGAATGATCTCCTAGTAAGGACGAA
TTTCTATTGATAAAGATGCTTATAATAGTCCGTATAAAAACCATCGGTCT
CAACATAATTTACTTTTTTTTACTTTTCAGCGAAAGTCGTATTCAAAGCA
CTCCTTTCAAGTGATTGGCAAATGAAGAAAAACTTCCAAGTCAAACAAAT
CTTGGATGCAAACATTCCCAATTACGATTTGGAACACGTGCACACAGTTA
AAAGAGTGGCCAGTATTTTCACCAGTCAAAAGAAACTTGAAAAAGAAGGT
GAATACGATATGATCATATTTCTTCAAACATGACTAAATACTTCCTTGAG
TGATTTTGGTTCTTACTTACAGAACACACAGATTTGACTGCTATTCGTCA
GAGAATTCAGCATCTTTCAACCCTGCAAGTGTGGTTTTGTTATATTTTTG
TTGCTGAGTCTTTTTAAAGATGAATTATGTTAGATTTAGTCCATTGCCTA
GAATTTAACCATGAAAAATGAGAATACCTCTTTTTCAAAAGATATTAGTT
TGGAAACAGTTCTCAATGCACCATTGTTGACATTTTTACGAATTTTTCTT
GTTAAGATTTGCTGATGAGTTTACAGCGTGGTGTGTACTGCCCTGGAGAA
ACCATCAAGTTGAATTTACAATACAAGTACGTTGAAGCGAGAAAGATGGG
TTTGGTCAAATGCCGGTTAAACAAATATAAACGATTGAATAAAAAAGAAA
ACAAAAATATTTACAAAAAGACAGTCAAAGAAAAGAATGGTAAGTCATCA
TTTCTACAACTTATTATGTTATGACCGAAACCTTGAAGCTATTGGCAGCA
GGATTTTTATGAAAACCCTATCTCCACATGAACTCCAAAACTCCAAAAAG
TAGTGGCTTGTTTACCAGTATTTATAGTTTCTTTCATTGAAAAGTCAGGT
GTGTCACCGGTACCCTGAGCTTCCACTGAACATGTTGCCTTCATCAAACT
CTTAGTCAAGCATGCTAGACGACTAATTTAGACATCAAGGAACAATAAGC
AAAAAATAATGAAAGAAACAAATTTTTTCCTTTTACGAACTGATATTATC
CCATTGCATTATAACATAACATCGTAATGACACCCATACTATAATACACG
GATTATAAACAATACCCCGCCGATCTATTGAACTCTAAAAACCTCTGAAA
AGTGTCACAAATCAAACCAATCAAAGTCCATGAAAATGTGCATTGGAGAA
GATGAACTATATACAGTTTTGTTCAATAAACTGAGATTTTCATCTTGATT
CATTTCACAGACAGTAAACGATGCGATGATAAAATTTACCAACGAAATAT
TTCGATAGAAGTTCCGGAAAAACTTACGCCCACCAACACCCTTACAAACG
CCCTCTGCATTGAGTATGTTTTACACGTTAAAGTGGAAGGGTACAAAGAG
TGGAAATTACCCATTGTTATTGGAACAATACCCTTCGATGAAAACAGACA
ACAACAGCAACAACATCAGATAAACACGCAAGGTAAAGTTTTTTTTGAGC
TTTCTTGAGCTTCATTAAATATTATTACTTCCTTCCATTTTTGTATTTTT
AAGTTGTCGTCTTCTATGTCGTAGAGAAGTTGAATGCTTTGTCATTTGAG
AAAGTTTTTGGATTGTTGGATAACGTCAATCTTTCTTTTTATGAGACAGA
GATATTATATGAGATTCTCATTTGAGACAGGGGTGAGCATAACGGGAAAC
TTTTAGTTAAAACAAGGGTAAAATCTGACTTGATCATGGGTGTCATGTTA
TGAGAAACCTTCATTTAGCTCATGCACTTAATCCGATGTGAACTCATTTT
AAACAGGGAGATTGGATTATATTAAATTTTCGTATGAGACAAGGATATCA
AACCAAGTGAAATTTCCCAAGAGACAGGGGTGTAGTTTTACGTACAGTTT
TTATTGAAGACAAGGTTGTGAAATTGAAATTTTCATGTCGTAAGATTCGT
GAGATTTGGAATCATTTTCATGAGATAATGGTGTCCTAACATACTATTCG
GAAATATATTGTTTGAAAAAACGGATGGTTTATATTTACTTTAATTTTTC
TCTTTTTCTCCAGGACAACCACAAGTTATAACCGAGCCGTCAACCTCAAG
ACCGACCGCCCCTCCTTCTGCCCCTCCTTCTGCCCCTCCTTCTGCCCCTA
GTGCACCAGTGGAAGTTCCATCGGGTAACAGCCTCATCTATCCGATAATT
CATGATATTGGTGGTGAAATCCAATGTGAATTTTTCCACCCACCACCCTA
CGTTCCAGAAAACGAATTTGATCTACCGCCTTCTTATGATGAAGTGTTAC
AAGAAAATCCAACGCCTGGCTCGTCCGCCCCATCCGCCCCATCCGCCCCT
CACGGACAACAATTGATCGCTGCACAGTGATCATTAACAGCGTTTATGGA
AGGTGGTAGTTCATTTGATTTACGACATCATCAGTGAATATGCTGGAATC
TATTCAAACGATAATATGTTGGTTCCTGAAAGATTTCGTGCATTTTTAGC
AAAATTTGAGTGCTTTTGCGCTTTCTTGCAGGCAAGAATCGTGAAAGTAG
GATGTCTTTGGAATGATGTAAAATAGTTCTGTTACTTTGAAAACGAATAG
TATTCTACGAAATGATCGAATGTATCTGAGTTGCTATGGGTTGCTATGGG
TTGCTATGGGTTGCTAGAAGCTTCAGTTTTCATGCTGGTTCGTGAAAAAG
TCCATAAAATCCTTTTCCGTTAGTTTAATATGAAGCCTTTATTGTGAATT
TGAAAAATCTTTCTTAAAATTTATTTAGAATAAAATTTTTGTATAGTATT
TGTTTTTATTACTGAAAAACTCTCAAGAAATATAGAAAAAACTTTTTACT
TTGTAAAATAATAAAAAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008627XLOC_008627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015453-exon-sc0000211-1575043694:63487..63536TCONS_00015453-exon-sc0000211-1575043694:63487..63536Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:62654..62867TCONS_00015453-exon-sc0000211-1575043694:62654..62867Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:61774..61980TCONS_00015453-exon-sc0000211-1575043694:61774..61980Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:61239..61406TCONS_00015453-exon-sc0000211-1575043694:61239..61406Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:60748..60930TCONS_00015453-exon-sc0000211-1575043694:60748..60930Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:60005..60226TCONS_00015453-exon-sc0000211-1575043694:60005..60226Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1575043694:58615..59423TCONS_00015453-exon-sc0000211-1575043694:58615..59423Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:63487..63536TCONS_00015453-exon-sc0000211-1510915933:63487..63536Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:62654..62867TCONS_00015453-exon-sc0000211-1510915933:62654..62867Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:61774..61980TCONS_00015453-exon-sc0000211-1510915933:61774..61980Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:61239..61406TCONS_00015453-exon-sc0000211-1510915933:61239..61406Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:60748..60930TCONS_00015453-exon-sc0000211-1510915933:60748..60930Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:60005..60226TCONS_00015453-exon-sc0000211-1510915933:60005..60226Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1510915933:58615..59423TCONS_00015453-exon-sc0000211-1510915933:58615..59423Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:63487..63536TCONS_00015453-exon-sc0000211-1491911889:63487..63536Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:62654..62867TCONS_00015453-exon-sc0000211-1491911889:62654..62867Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:61774..61980TCONS_00015453-exon-sc0000211-1491911889:61774..61980Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:61239..61406TCONS_00015453-exon-sc0000211-1491911889:61239..61406Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:60748..60930TCONS_00015453-exon-sc0000211-1491911889:60748..60930Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:60005..60226TCONS_00015453-exon-sc0000211-1491911889:60005..60226Clytia hemisphaericaexon
TCONS_00015453-exon-sc0000211-1491911889:58615..59423TCONS_00015453-exon-sc0000211-1491911889:58615..59423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:58615..63536 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00014614	1.00997e-07	7.2701e-09	0.00349328	6.07969e-07	0	2.44064	0.922901	1.03352	2.52102e-10	0	0	1.79845e-08	2.66965e-09	1.32074e-08	0.810419	2.54165	1.25137	0.000939636	4.43715	4.2325e-05	4.2399e-08	0.0178901	2.95289e-05	0.118465	0.0798051	4.37355	4.2183	3.99605	7.22267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top