TCONS_00015452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015452
Unique NameTCONS_00015452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015452 ID=TCONS_00015452|Name=TCONS_00015452|organism=Clytia hemisphaerica|type=transcript|length=1853bp
CAGTTTCTATCTTATCTGCTTTTCTAAGAATCTTGATTTGGGTAGGCGAG
ACTAAAACACGTAAAGACTACAACTATAAACAGCTATAAAAGGAGAAAAC
ATTGAACTACAGACGGAAGAAGCACAAGATGGGGCGCAAAGAGCTGAAAA
TCTATTTGGATAACGAAAAGGAATGTTATTTTGCCGGTGAACAATTGACA
GGTCACGTGACATTGGAGCTGAATGAGCCAACGAGCGTTTTGAGAATCAT
TCTCTACGTCAAAGGAAAAGGAATTTGCAAAGTGGGAAATTCCTGCAAAG
AAGTCTTTTACAAAAATGATGTCACACTGTACGGAACAATGCCGGGACAA
CACGCGGTAACACGACAGCACCCTGTCGGTAAACGAAATTATCGGTTTAA
TTTTCTGCTACCTACGGAATTACCGAGTTCGACGGTTGAAGGGGGAGGAT
TGATCAAGTACACACTGACAGcGAAAGTCGTATTCAAAGCACTCCTTTCA
AGTGATTGGCAAATGAAGAAAAACTTCCAAGTCAAACAAATCTTGGATGC
AAACATTCCCAATTACGATTTGGAACACGTGCACACAGTTAAAAGAGTGG
CCAGTATTTTCACCAGTCAAaagaaacttgaaaaagaagATTTGCTGATG
AGTTTACAGCGTGGTGTGTACTGCCCTGGAGAAACCATCAAGTTGAATTT
ACAATACAAGTACGTTGAAGCGAGAAAGATGGGTTTGGTCAAATGCCGGT
TAAACAAATATAaacgattgaataaaaaagaaaacaaaaatatttacaaa
aagacAGTCAAAGAAAAGAATGACAGTAAACGATGCGATGATAAAATTTA
CCAACGAAATATTTCGATAGAAGTTCCGGAAAAACTTACGCCCACCAACA
CCCTTACAAACGCCCTCTGCATTGAGTATGTTTTACACGTTAAAGTGGAA
GGGTACAAAGAGTGGAAATTACCCATTGTTATTGGAACAATACCCTTCGA
TGAAAACagacaacaacagcaacaacatcAGATAAACACGCAagGACAAC
CACAAGTTATAACCGAGCCGTCAACCTCAAGACCGACCGCCCCTCCTTCT
GCCCCTCCTTCTGCCCCTCCTTCTGCCCCTAGTGCACCAGTGGAAGTTCC
ATCGGGTAACAGCCTCATCTATCcgataattcatgatattggTGGTGAAA
TCCAATGTGAATTTTTCCACCCACCACCCTACGTTCCAGAAAACGAATTT
GATCTACCGCCTTCTTATGATGAAGTGTTACAAGAAAATCCAACGCCTGG
CTCGTCCGCCCCATCCGCCCCATCCGCCCCTCACGGACAACAATTGATCG
CTGCACAGTGATCATTAACAGCGTTTATGGAAGGTGGTAGTTCATTTGAT
TTACGACATCATCAGTGAATATGCTGGAATCTATTCAAACGATAATATGT
TGGTTCCTGAAAGATTTCGTGcatttttagcaaaatttgaGTGCTTTTGC
GCTTTCTTGCAGGCAAGAATCGTGAAAGTAGGATGTCTTTGGAATGATGT
AAAATAGTTCTGTTACTTTGAAAACGAATAGTATTCTACGAAATGATCGA
ATGTATCTGAGTTGCTATGGGTTGCTATGGGTTGCTATGGGTTGCTAGAA
GCTTCAGTTTTCATGCTGGTTCGTGAAAAAGTCCATAAAATCCTTTTCCG
TTAGTTTAATATGAAGCCTTTAttgtgaatttgaaaaatctttcttaaaa
tttatttagaataaaatttttgTATAGTATTTGTTTTTATTACTGAAAAA
CTCTcaagaaatatagaaaaaactttttactttgtaaaataataaaaaag
aac
Run BLAST on NCBI

transcript from alignment at sc0000211:58615..63349-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015452 ID=TCONS_00015452|Name=TCONS_00015452|organism=Clytia hemisphaerica|type=transcript|length=4735bp|location=Sequence derived from alignment at sc0000211:58615..63349- (Clytia hemisphaerica)
CAGTTTCTATCTTATCTGCTTTTCTAAGAATCTTGATTTGGGTAGGCGAG
GTAACGATCAATATTCTCGCTAAATAAAAATATAAAGACAGCTGATTCTA
TAATCACAATATTCTCCTATTTTTTACTTCATAATTTCTCGAAAGTGAAG
ATTTATGTAAATAGAAATTGAAGATTTACTCTTCTCACTTTTCACTTCTT
GATATTTGAGCTTAGAGACATTAAGCTTTTTGGCACCGTTATCCCTCAGT
TTTTCTCTCGTTTGACGAAGTTGGAGTTGTTTTGAAGTGCGGTGAATCNT
GACAACGTTATTCCTCAGTTTTTCTCTCGTGTGACGAAGTTGGAGTTATT
TTGAAGTGCGGTGAATGTTGTTTACATTTGGACTTCAGTTTGACTTTTCT
CCCCTCGCCACAGACTAAGATTATAACCAACTCTTGGCTTTTTTGTTTCT
GCTTTACAACTCTCCCCGTTTTAATTCCTTAGACTAAAACACGTAAAGAC
TACAACTATAAACAGCTATAAAAGGAGAAAACATTGAACTACAGACGGAA
GAAGCACAAGATGGGGCGCAAAGAGCTGAAAATCTATTTGGATAACGAAA
AGGAATGTTATTTTGCCGGTGAACAATTGACAGGTCACGTGACATTGGAG
CTGAATGAGCCAACGAGCGTTTTGAGAATCATTCTCTACGTCAAAGGTAT
CGTAAATTTTTCCTTTTAGCTAAGACTTTTATTTCCTTGATAAAAACACC
CCTGTGTCACGTCACAGACCGGGTAGGACCCCCTACCCCATTGAAAATTA
GGCTAAAATTTCGTCCCTGATGTGGAAAATAACCTACAATTTAAGCTCCT
CTGGGAAATTGATTTTGTTTTCATCCCCATTTGAAATTCGATGGAAAAAT
TACACTCCAGATTCATCCCGACTTTTTGACCTGGGAATTTCTGTCCCCAC
TAAGGATTTCGATTGAAATTTTCATCCAATTGTGGGAAGAAGCTCCTGAA
AAAGTGGTATATAAGAAGACTGTGATGTTGTAGTAAACATCCCTGTCTGA
GTGGCTGGAAACGTATACATGTTGATGTGAAGAGTCAGATTCGCAGCCAA
AACTTCCACCGGGTTTCTTAAAATACTGTCTTCAAATGGTGTAGTTTGAT
AAAAGGTTCGATTGATAGCATTCTAAATCTGAAATTTGATTTAAGGATAT
TTTTCGAAGCTTCGAAAGTCCTATATACTATCTCGGCTGTTTTTTAAGTC
CAATTACAGTGAGATTTAGATAACGGACATTTTACCGTAACAGAGAAAGT
TAACTTAAATGATAGGTAGTCCACCTTTCACTTCGACACTGCTTCAAACA
TTTCCTTCATTTTCATCAGGAAAAGGAATTTGCAAAGTGGGAAATTCCTG
CAAAGAAGTCTTTTACAAAAATGATGTCACACTGTACGGAACAATGCCGG
GACAACACGCGGTAACACGACAGCACCCTGTCGGTAAACGAAATTATCGG
TTTAATTTTCTGCTACCTACGGAATTACCGAGTTCGACGGTTGAAGGGGG
AGGATTGATCAAGTACACACTGACAGGTTTGTATTTCTTTAAGTATTTTT
TGATGTTTTTACATTTCTTAATCTTACCAAAGCTTGCTATTCAGTAACGT
AGACAGGAGGGGCGAAAATTTGTGTAGTTAATTAATACCATGAATAGATA
ATTACAGTGTCATAAAAATCTGCTCTTCTACAACCAAGGGAATTAAGATT
CATTTTTAGAAACTTTCCAGCTTTTTGGTGATATACTAAACTTAAACTAA
AGCTAGAACTTCACTCACCAGGTAACAAGAAGTTTAAATGAATGATCTCC
TAGTAAGGACGAATTTCTATTGATAAAGATGCTTATAATAGTCCGTATAA
AAACCATCGGTCTCAACATAATTTACTTTTTTTTACTTTTCAGCGAAAGT
CGTATTCAAAGCACTCCTTTCAAGTGATTGGCAAATGAAGAAAAACTTCC
AAGTCAAACAAATCTTGGATGCAAACATTCCCAATTACGATTTGGAACAC
GTGCACACAGTTAAAAGAGTGGCCAGTATTTTCACCAGTCAAAAGAAACT
TGAAAAAGAAGGTGAATACGATATGATCATATTTCTTCAAACATGACTAA
ATACTTCCTTGAGTGATTTTGGTTCTTACTTACAGAACACACAGATTTGA
CTGCTATTCGTCAGAGAATTCAGCATCTTTCAACCCTGCAAGTGTGGTTT
TGTTATATTTTTGTTGCTGAGTCTTTTTAAAGATGAATTATGTTAGATTT
AGTCCATTGCCTAGAATTTAACCATGAAAAATGAGAATACCTCTTTTTCA
AAAGATATTAGTTTGGAAACAGTTCTCAATGCACCATTGTTGACATTTTT
ACGAATTTTTCTTGTTAAGATTTGCTGATGAGTTTACAGCGTGGTGTGTA
CTGCCCTGGAGAAACCATCAAGTTGAATTTACAATACAAGTACGTTGAAG
CGAGAAAGATGGGTTTGGTCAAATGCCGGTTAAACAAATATAAACGATTG
AATAAAAAAGAAAACAAAAATATTTACAAAAAGACAGTCAAAGAAAAGAA
TGGTAAGTCATCATTTCTACAACTTATTATGTTATGACCGAAACCTTGAA
GCTATTGGCAGCAGGATTTTTATGAAAACCCTATCTCCACATGAACTCCA
AAACTCCAAAAAGTAGTGGCTTGTTTACCAGTATTTATAGTTTCTTTCAT
TGAAAAGTCAGGTGTGTCACCGGTACCCTGAGCTTCCACTGAACATGTTG
CCTTCATCAAACTCTTAGTCAAGCATGCTAGACGACTAATTTAGACATCA
AGGAACAATAAGCAAAAAATAATGAAAGAAACAAATTTTTTCCTTTTACG
AACTGATATTATCCCATTGCATTATAACATAACATCGTAATGACACCCAT
ACTATAATACACGGATTATAAACAATACCCCGCCGATCTATTGAACTCTA
AAAACCTCTGAAAAGTGTCACAAATCAAACCAATCAAAGTCCATGAAAAT
GTGCATTGGAGAAGATGAACTATATACAGTTTTGTTCAATAAACTGAGAT
TTTCATCTTGATTCATTTCACAGACAGTAAACGATGCGATGATAAAATTT
ACCAACGAAATATTTCGATAGAAGTTCCGGAAAAACTTACGCCCACCAAC
ACCCTTACAAACGCCCTCTGCATTGAGTATGTTTTACACGTTAAAGTGGA
AGGGTACAAAGAGTGGAAATTACCCATTGTTATTGGAACAATACCCTTCG
ATGAAAACAGACAACAACAGCAACAACATCAGATAAACACGCAAGGTAAA
GTTTTTTTTGAGCTTTCTTGAGCTTCATTAAATATTATTACTTCCTTCCA
TTTTTGTATTTTTAAGTTGTCGTCTTCTATGTCGTAGAGAAGTTGAATGC
TTTGTCATTTGAGAAAGTTTTTGGATTGTTGGATAACGTCAATCTTTCTT
TTTATGAGACAGAGATATTATATGAGATTCTCATTTGAGACAGGGGTGAG
CATAACGGGAAACTTTTAGTTAAAACAAGGGTAAAATCTGACTTGATCAT
GGGTGTCATGTTATGAGAAACCTTCATTTAGCTCATGCACTTAATCCGAT
GTGAACTCATTTTAAACAGGGAGATTGGATTATATTAAATTTTCGTATGA
GACAAGGATATCAAACCAAGTGAAATTTCCCAAGAGACAGGGGTGTAGTT
TTACGTACAGTTTTTATTGAAGACAAGGTTGTGAAATTGAAATTTTCATG
TCGTAAGATTCGTGAGATTTGGAATCATTTTCATGAGATAATGGTGTCCT
AACATACTATTCGGAAATATATTGTTTGAAAAAACGGATGGTTTATATTT
ACTTTAATTTTTCTCTTTTTCTCCAGGACAACCACAAGTTATAACCGAGC
CGTCAACCTCAAGACCGACCGCCCCTCCTTCTGCCCCTCCTTCTGCCCCT
CCTTCTGCCCCTAGTGCACCAGTGGAAGTTCCATCGGGTAACAGCCTCAT
CTATCCGATAATTCATGATATTGGTGGTGAAATCCAATGTGAATTTTTCC
ACCCACCACCCTACGTTCCAGAAAACGAATTTGATCTACCGCCTTCTTAT
GATGAAGTGTTACAAGAAAATCCAACGCCTGGCTCGTCCGCCCCATCCGC
CCCATCCGCCCCTCACGGACAACAATTGATCGCTGCACAGTGATCATTAA
CAGCGTTTATGGAAGGTGGTAGTTCATTTGATTTACGACATCATCAGTGA
ATATGCTGGAATCTATTCAAACGATAATATGTTGGTTCCTGAAAGATTTC
GTGCATTTTTAGCAAAATTTGAGTGCTTTTGCGCTTTCTTGCAGGCAAGA
ATCGTGAAAGTAGGATGTCTTTGGAATGATGTAAAATAGTTCTGTTACTT
TGAAAACGAATAGTATTCTACGAAATGATCGAATGTATCTGAGTTGCTAT
GGGTTGCTATGGGTTGCTATGGGTTGCTAGAAGCTTCAGTTTTCATGCTG
GTTCGTGAAAAAGTCCATAAAATCCTTTTCCGTTAGTTTAATATGAAGCC
TTTATTGTGAATTTGAAAAATCTTTCTTAAAATTTATTTAGAATAAAATT
TTTGTATAGTATTTGTTTTTATTACTGAAAAACTCTCAAGAAATATAGAA
AAAACTTTTTACTTTGTAAAATAATAAAAAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008627XLOC_008627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015452-exon-sc0000211-1575043694:63300..63349TCONS_00015452-exon-sc0000211-1575043694:63300..63349Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:62654..62867TCONS_00015452-exon-sc0000211-1575043694:62654..62867Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:61774..61980TCONS_00015452-exon-sc0000211-1575043694:61774..61980Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:61239..61406TCONS_00015452-exon-sc0000211-1575043694:61239..61406Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:60748..60930TCONS_00015452-exon-sc0000211-1575043694:60748..60930Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:60005..60226TCONS_00015452-exon-sc0000211-1575043694:60005..60226Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1575043694:58615..59423TCONS_00015452-exon-sc0000211-1575043694:58615..59423Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:63300..63349TCONS_00015452-exon-sc0000211-1510915933:63300..63349Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:62654..62867TCONS_00015452-exon-sc0000211-1510915933:62654..62867Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:61774..61980TCONS_00015452-exon-sc0000211-1510915933:61774..61980Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:61239..61406TCONS_00015452-exon-sc0000211-1510915933:61239..61406Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:60748..60930TCONS_00015452-exon-sc0000211-1510915933:60748..60930Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:60005..60226TCONS_00015452-exon-sc0000211-1510915933:60005..60226Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1510915933:58615..59423TCONS_00015452-exon-sc0000211-1510915933:58615..59423Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:63300..63349TCONS_00015452-exon-sc0000211-1491911889:63300..63349Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:62654..62867TCONS_00015452-exon-sc0000211-1491911889:62654..62867Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:61774..61980TCONS_00015452-exon-sc0000211-1491911889:61774..61980Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:61239..61406TCONS_00015452-exon-sc0000211-1491911889:61239..61406Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:60748..60930TCONS_00015452-exon-sc0000211-1491911889:60748..60930Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:60005..60226TCONS_00015452-exon-sc0000211-1491911889:60005..60226Clytia hemisphaericaexon
TCONS_00015452-exon-sc0000211-1491911889:58615..59423TCONS_00015452-exon-sc0000211-1491911889:58615..59423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:58615..63349 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8868	11.0784	20.6445	12.4567	6.07969e-07	0	2.44064	0.922901	5.16762	10.6333	11.7091	2.36591	27.0843	16.4943	16.2041	30.7959	12.7083	12.5137	20.3017	28.102	5.39729	6.6864	22.3241	22.3153	0.118465	0.0798051	78.7239	71.7111	69.9309	62.5965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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