|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015442 ID=TCONS_00015442|Name=TCONS_00015442|organism=Clytia hemisphaerica|type=transcript|length=1313bp
AAAAACGAGAGTGACGTCTAGTAGACTATTATTGTAATGCAACCAATGca
acaaaataaatgtttgagTTTAGCAGCTTCAGCCACCATGGTTCTTGATA
TATTGAGCTCACCAGAACATTTGCAAATGTTACAATGCTACGGAGATGAG
GAAACACAGGAGGAAAATCTCGTTGGAAGGGATTAtgatattgagatttt
tcacGAGCCAGCGAATTTTAAACCAAGATCGGGGAACGATCATGAGGCTC
CGAAGCAGCGACGTGTGACGATTGCTGATATGCCTGTCAATCATCCCCAA
TATCCTCCTGGGTATTCCGGCGAAGggAGACAAAGATGCCGAAGCCGTTA
TTCAACCTTCATTGCGGGTATCAATCAATTCGATCCATACCAAGAGTTGA
CGGCCACGCAAATTGCTGCTTTTCGTCAAGTCTTTGACATGGTTGACAGA
GATGGTGGTGGAAGTATAGATGCCAACGAACTGTATTACAGCATGAGAGA
TTTAGAATCTGGATTAATATTGGATGAGATCAAAGAGATTTTGGAAGAGC
TTGATCGTGATGGGAACGGTGAAATTGATTTCGAAGAATTTCTTTACATG
ATGACCAGCATGAGCCTACAAATCAAAGAGGCTCAAGAAGATAACGTATT
GGTTAAACAAGGCAAACGTCGTCAAAGCATCTTCTTTTCTGTCATTACAA
AATTTGCTATGAAACATTCCTTGAAAGAAATCGAGCATTACTACGCGAGC
AAAGCTAAACGTTCTCCACACGTTGTCGGACATTACATAGCTGGTGCTCG
TGTCTTTGGCCTTACTGATAAAGAATTACGTAAAACATGGAAAGAATTCT
CACACGCCAGTAAAGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACTTT
ATAGTCGATGATAACAATAACGgaaaaaagaagatgaagaaaacaGTCGT
TCGTGCCATGCCGCGTGATAAAAAAACAGAGTTGAAAACTTCTGTGGCGA
ATGATGATTCTCATAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTAAA
CCCACCTCACCACAGCCTGTACATTGCACAAATACTGCCATAGATGCTGC
TGCAAGTGAAAAGTCAGAACTCAATATAGAATGTTCTCCTCGCTCTGTAT
CTCCGTGTCCTGGGAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGCGA
TCGACAAGCTCCACCCGAAGTGGTGGCACCCTATCACCGACATTAGAAAA
ACGCGACGGTTGGACACCACGACATCGACTTCCAATGACTAAAGTGAAGC
TTCCAAAATTTAC Run BLAST on NCBI transcript from alignment at sc0000211:316503..318652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015442 ID=TCONS_00015442|Name=TCONS_00015442|organism=Clytia hemisphaerica|type=transcript|length=2150bp|location=Sequence derived from alignment at sc0000211:316503..318652+ (Clytia hemisphaerica)
AAAAACGAGAGTGACGTCTAGTAGACTATTATTGTAATGCAACCAATGca
acaaaataaatgtttgagGTACTTTTCTATCTTTTGAcgtttttgacgtc
aattcaaAGTGAAGACGTTGCAAAGTTCTATAAgagttttccaagaaaaa
tattctaacgttctccttttttgtttttagtttcGTTTCGTTTTGCGACT
GTTGGTCGTCGCTGgtcaaaaatgaccaaaaagaaaatgttttcgtGTTT
TTGTTTACATGTGTTTTCATTTCACACTTGATACATAGTTTAGCAGCTTC
AGCCACCATGGTTCTTGATATATTGAGCTCACCAGAACATTTGCAAATGT
TACAATGCTACGGAGATGAGGAAACACAGGAGGAAAATCTCGTTGGAAGG
GATTAtgatattgagatttttcacGAGCCAGCGAATTTTAAACCAAGATC
GGGGAACGATCATGAGGCTCCGAAGCAGCGACGTGTGACGATTGCTGATA
TGCCTGTCAATCATCCCCAATATCCTCCTGGGTATTCCGGCGAAGGTTTG
TAATCCGATCTTAAGTATCTAAGTTTATGtatattttttgctttattttc
ttCTCAGCATATCGAAGATTCTATTCAAAATGGGCTTTTCTCGTCACTTG
AAAGGTTTGAGATTTTCAAAACATGCAGatcttttctaaaattttagttt
GAGATATATGACTTCCAGAAAgtaaacaatttaattttctgagATTTCAA
TCATCGTGTAGATAATATGATTAAAACTTTCGGCAAAAAGTGTTACAGAT
TTTCTTCGTTGATGCAGCATGGGCCGGGAGAGGAATAAAAAAACACATTT
ATTCTCGCCAACGATAtcttttattcttattttcaaaattcagggAGACA
AAGATGCCGAAGCCGTTATTCAACCTTCATTGCGGGTATCAATCAATTCG
ATCCATACCAAGAGTTGACGGCCACGCAAATTGCTGCTTTTCGTCAAGTC
TTTGACATGGTTGACAGAGATGGTGGTGGAAGTATAGATGCCAACGAACT
GTATTACAGCATGAGAGATTTAGAATCTGGATTAATATTGGATGAGATCA
AAGAGATTTTGGAAGAGCTTGATCGTGATGGGAACGGTGAAATTGATTTC
GAAGAATTTCTTTACATGATGACCAGCATGAGCCTACAAATCAAAGGTGA
GTTGTGATAGTATTCTTCAAATGACATCCTTTATACCTAAATCTCATTTT
AACATAGTATGGAGGCAATATTTACCAAATCCATGATATCCCTTCAAACA
AGCATTTGAATCTTTAAGACGTTGATTGCATTATCGATGGGTATTTAGCA
TTACTTTTAGACCCTTGGTTTATCATCACTTCTAGACCTTTGGCTTGTTA
TTTGGACTACTCAGTACAAACTTTTCATTCATATCAACTTCAATCGATAT
CCTTTTTATTTTCAGAGGCTCAAGAAGATAACGTATTGGTTAAACAAGGC
AAACGTCGTCAAAGCATCTTCTTTTCTGTCATTACAAAATTTGCTATGAA
ACATTCCTTGAAAGAAATCGAGCATTACTACGCGAGCAAAGCTAAACGTT
CTCCACACGTTGTCGGACATTACATAGCTGGTGCTCGTGTCTTTGGCCTT
ACTGATAAAGAATTACGTAAAACATGGAAAGAATTCTCACACGCCAGTAA
AGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACTTTATAGTCGATGATA
ACAATAACGgaaaaaagaagatgaagaaaacaGTCGTTCGTGCCATGCCG
CGTGATAAAAAAACAGAGTTGAAAACTTCTGTGGCGAATGATGATTCTCA
TAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTAAACCCACCTCACCAC
AGCCTGTACATTGCACAAATACTGCCATAGATGCTGCTGCAAGTGAAAAG
TCAGAACTCAATATAGAATGTTCTCCTCGCTCTGTATCTCCGTGTCCTGG
GAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGCGATCGACAAGCTCCA
CCCGAAGTGGTGGCACCCTATCACCGACATTAGAAAAACGCGACGGTTGG
ACACCACGACATCGACTTCCAATGACTAAAGTGAAGCTTCCAAAATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015442-exon-sc0000211-1491911889:316503..316570 | TCONS_00015442-exon-sc0000211-1491911889:316503..316570 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1510915933:316503..316570 | TCONS_00015442-exon-sc0000211-1510915933:316503..316570 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1575043694:316503..316570 | TCONS_00015442-exon-sc0000211-1575043694:316503..316570 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1491911889:316791..317047 | TCONS_00015442-exon-sc0000211-1491911889:316791..317047 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1510915933:316791..317047 | TCONS_00015442-exon-sc0000211-1510915933:316791..317047 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1575043694:316791..317047 | TCONS_00015442-exon-sc0000211-1575043694:316791..317047 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1491911889:317396..317698 | TCONS_00015442-exon-sc0000211-1491911889:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1510915933:317396..317698 | TCONS_00015442-exon-sc0000211-1510915933:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1575043694:317396..317698 | TCONS_00015442-exon-sc0000211-1575043694:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1491911889:317968..318652 | TCONS_00015442-exon-sc0000211-1491911889:317968..318652 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1510915933:317968..318652 | TCONS_00015442-exon-sc0000211-1510915933:317968..318652 | Clytia hemisphaerica | exon |
| TCONS_00015442-exon-sc0000211-1575043694:317968..318652 | TCONS_00015442-exon-sc0000211-1575043694:317968..318652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:316503..318652 + |
Blast
The following BLAST results are available for this feature:
|
