TCONS_00015419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015419
Unique NameTCONS_00015419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015419 ID=TCONS_00015419|Name=TCONS_00015419|organism=Clytia hemisphaerica|type=transcript|length=1026bp
GttctgcaaaaattagttcccttaaagtaCTATCTCAATACTattatttt
tcagtttcagATTTAAAAGATTTAAATTTATAAGAGAAATAAACAAGAAA
TGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATG
GAAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGATGGTGACTCACC
TGACACTTCACCAAAACTTTCTGATGATGAAGCAATGACCGAAGCATTGG
CTGATGCTCAAAATGAAATGGCTAAAAGTATCTTAAAGAAACCAAGCGTT
CAAGAAGAAGAAGCTGAACCATCTCAGaccAAGTCGTCAAAACGCGAGTC
AAGAAAATCAATGTTCAGTTTAAGAGGATCTTCTTTAATCGACTGcggAT
ACGACGTAGCAAATCACCCAGCTGTTTACGTCTCATCACTCTTATTTTCA
CACACACTGGTATTTGCTTTAGGGTTGATTGTTGGCAAGAAATTGGCATC
ACAACCAAGACTTTAAAACGAAAAAGAATCGAATCAAAGTTATTGTTCAT
TCAAGTTGATGACTTTTAAATTATTCGGGTCCATCTAATTTTGTTTGCTA
CGGAtggaatcattttttttttaattttagaaattgttccaatgaatttt
ttgatttttagtataTAGATAGTTAGACATATTATGACAATTTTCAAGTT
GATACATTTTCCGACATCggactttttttgttttggtaatCATATGAAAA
TAAAGGCAAAAAAATTCCTTAGCAATCAAAGACCACTTGTTAAAACTTTT
CAGGTTGCTTAAAGTGTTAATTTTGGGTAATTGTCGGAATCGACTGGAAA
ATGAGTTGATTTTTTAGAATATACAGGATTTGTCTTAATTCatacttttt
tatattttcgcaaaaaaaaataattataaatatTTGCATTAGTTAGTTTT
ATTTCTTATAACGTTTTCCAAATTATTTATGTTTCGTTATTCTTAAAGTT
AAAAAAGATACATCGAAAGATATTAT
Run BLAST on NCBI

protein sequence of TCONS_00015419-protein

>TCONS_00015419-protein ID=TCONS_00015419-protein|Name=TCONS_00015419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MSESQDPVVPPVEPTQMEGSWIQLDSKSKDGDSPDTSPKLSDDEAMTEAL
ADAQNEMAKSILKKPSVQEEEAEPSQTKSSKRESRKSMFSLRGSSLIDCG
YDVANHPAVYVSSLLFSHTLVFALGLIVGKKLASQPRL
Run BLAST on NCBI

transcript from alignment at sc0000211:97487..100697+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015419 ID=TCONS_00015419|Name=TCONS_00015419|organism=Clytia hemisphaerica|type=transcript|length=3211bp|location=Sequence derived from alignment at sc0000211:97487..100697+ (Clytia hemisphaerica)
GttctgcaaaaattagttcccttaaagtaCTATCTCAATACTattatttt
tcagtttcagATTTAAAAGATTTAAATTTATAAGAGAAATAAACAAGAAA
TGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATG
GAAGGTATAACTTTCTTAAAACATAACTTGTAACTGCTTGAAAAAGACAC
TTTTTCCAGTTTGAAAGTAAATTTCTCTGAGATTTTATATTTATctgaat
ttttttggaaagtaagttatttttctttggaaaatacaaacttctttttt
acccaagaccaatttttctcttattttctttctttcgtaTTATATTATTC
ATTTTTTACATTTCCCAAGGTAAATGAAGTAACTTGATTATAGAATACTC
AGATGTATATTTTTCAAGACTTTGTCTTGGTTTGATCAATGTACACTGAC
TTAAAAgttcataaatttttttgcaatttttttctataCAGAATTTTAAA
TTCATTCACAAAATATTGCGGTATGTAATAGAGGAATCGGTCATTTACCA
ACTTTTCTCTTTGCAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGA
TGGTGACTCACCTGACACTTCACCAAAACTTTCTGATGATGAAGCAATGA
CCGAAGCATTGGCTGATGCTCAAAATGAAATGGCTAAAAGGTGTGTACTC
TCAAGTGAATCGCCTTTGACTAAGGAGAAATTAACGAAAGggaagaaaaa
tacaaaagaaaatacaatATAAGGGTTTTAAAAGCGTGtaggtttaaaaa
agaaaattaacaagTTCTGTAAAAAGTCGATTTTACAGTCAGTTATTATT
AGAAGTTTAATACCATACAAATAGCCATTTTAATTAGctaagaattttca
tttttataccaATATTatttacactttttttgaaaGGACAGTATCTAGAG
AGGTGCAGTTCTATTAGAATGCTGATTACCTCAAGCTTTAATTTGCTATG
TGGTTTTCTTAACAAAATAGTAGATCTTTGCTTTCTGGACTTCAAAAAAT
TTATGCACTTTAtgtaatcaaaaatgatttgACATTTTGGACTTCTTTCC
TTTACCAGTATCTTAAAGAAACCAAGCGTTCAAGAAGAAGAAGCTGAACC
ATCTCAGGTTTAACTTTTACTTTAATGAAGAAATTACCAAAACTTGTAGA
AACTCgcgaaattttcatttctaCCCGATCCAGGACAGAGAGATGGCCAG
GGGTACTTATTTTTACCTAAGTACCGCTGCCAGACCcttgataaaaaaca
aatgcaGCCCATGTTATCTTACAAccctttcaaaaatgtttatttgtTTG
TGTGAATCCATAGAGGCTTTATTTTCGATAGATTTGGATAATCTGCTTCT
TCTGCTTGATAAAAAGTGCCCTTATTGTGCCTGTTTCAATCTCAATCTCC
TGATAACAATAATgactcttttttttgttttagaccAAGTCGTCAAAACG
CGAGTCAAGGTTAGTAGTTCTCAATTACCAGTTCAAAATTTAACCGGTTC
TTTATTGAAATTCCCTctcttttttgagaaattacGGAAGTGTAACTTTT
TCGCTAAATCTAGGAGTAACACTAAATTTAATAGGAATTGGTGGTAATGC
GAATGTCAGATTAGCTTACTCTCAGCGTGCTTAATAAATACCCCTATCTT
TGCTAAAATTAATTGATAAAGGGAGAGTCTTGCTTTAAACCATCTGATGT
TAGACTATATGACTTGTTATTTTCTAACCCCACCCCGTCAATCTGGACCC
GTTTATTAGAGTTTGAACATTTTGTCCAACTCCTCCCTTATGACATCCTT
TCGTTTAAAGTGTATCTGAGAGTAACCCTTAAGCATATATTTATCTGTGA
AGAGCTATAGGTTTAAGCCAAGTcatattttagattttgagatgTAATGA
gctaattcttcttttttgcATGCAGAAAATCAATGTTCAGTTTAAGAGGA
TCTTCTTTAATCGACTGGTAATTACATTCACTTATACCTTCGCTAattca
ctcactcactcactcgtTCACATGTACAACTTTTATATACATGCATGCAT
TTTGAACCTGAGCAATAGTCCAAGTCAAGTTAGCTACAGGGCAAGTTAAT
AAAAATGATGCCAGTTTTGGTAGCTGTGAAAAAAAGTCCTAATATTTTAT
TTACGCATATTAGAATGTTTGCTGAAATTAATGTAATAGTTATAGctctt
ctttttctctttttagcggATACGACGTAGCAAATCACCCAGCTGTTTAC
GTCTCATCACTCTTATTTTCACACACACTGGTATTTGCTTTAGGGTAAGT
AAGATTTCCAACGTGCTACATATTTCCTGCGGCTTCGCTTCCATATTTCT
GGACAtacgaattcttttcaaattgaCTGGGAATGGGACTTCCCTAAAAT
CACTTTCAAATTACCCATGTTATCTAGCAACCATGGTGGGCAACGTTAAT
TTATTCCAAGTTTCTGTGCTCTCTACTTCAACGCTCGGGATGTTTTCAGT
GTTGTCCTATGCtgttagcttttttttttgctttttcattctctcttttt
aagttttttttataggaattcagaaaatttctaacttttttctaaatttt
tcttcCAGGTTGATTGTTGGCAAGAAATTGGCATCACAACCAAGACTTTA
AAACGAAAAAGAATCGAATCAAAGTTATTGTTCATTCAAGTTGATGACTT
TTAAATTATTCGGGTCCATCTAATTTTGTTTGCTACGGAtggaatcattt
tttttttaattttagaaattgttccaatgaattttttgatttttagtata
TAGATAGTTAGACATATTATGACAATTTTCAAGTTGATACATTTTCCGAC
ATCggactttttttgttttggtaatCATATGAAAATAAAGGCAAAAAAAT
TCCTTAGCAATCAAAGACCACTTGTTAAAACTTTTCAGGTTGCTTAAAGT
GTTAATTTTGGGTAATTGTCGGAATCGACTGGAAAATGAGTTGATTTTTT
AGAATATACAGGATTTGTCTTAATTCatacttttttatattttcgcaaaa
aaaaataattataaatatTTGCATTAGTTAGTTTTATTTCTTATAACGTT
TTCCAAATTATTTATGTTTCGTTATTCTTAAAGTTAAAAAAGATACATCG
AAAGATATTAT

Coding sequence (CDS) from alignment at sc0000211:97487..100697+

>TCONS_00015419 ID=TCONS_00015419|Name=TCONS_00015419|organism=Clytia hemisphaerica|type=CDS|length=2919bp|location=Sequence derived from alignment at sc0000211:97487..100697+ (Clytia hemisphaerica)
ATGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAAT
GGAAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGATGGTGACTCAC
CTGACACTTCACCAAAACTTTCTGATGATGAAGCAATGACCGAAGCATTG
GCTGATGCTCAAAATGAAATGGCTAAAAGTATCTTAAAGAAACCAAGCGT
TCAAGAAGAAGAAGCTGAACCATCTCAGaccAAGTCGTCAAAACGCGAGT
CAAGAAAATCAATGTTCAGTTTAAGAGGATCTTCTTTAATCGACTGcggA
TACGACGTAGCAAATCACCCAGCTGTTTACGTCTCATCACTCTTATTTTC
ACACACACTGGTATTTGCTTTAGGGTTGATTGTTGGCAAGAAATTGGCAT
CACAACCAAGACTTTAAATGAGTGAATCTCAAGATCCTGTTGTTCCTCCA
GTTGAACCAACCCAAATGGAAGGCTCATGGATTCAATTAGATTCAAAAAG
TAAAGATGGTGACTCACCTGACACTTCACCAAAACTTTCTGATGATGAAG
CAATGACCGAAGCATTGGCTGATGCTCAAAATGAAATGGCTAAAAGTATC
TTAAAGAAACCAAGCGTTCAAGAAGAAGAAGCTGAACCATCTCAGaccAA
GTCGTCAAAACGCGAGTCAAGAAAATCAATGTTCAGTTTAAGAGGATCTT
CTTTAATCGACTGcggATACGACGTAGCAAATCACCCAGCTGTTTACGTC
TCATCACTCTTATTTTCACACACACTGGTATTTGCTTTAGGGTTGATTGT
TGGCAAGAAATTGGCATCACAACCAAGACTTTAAATGAGTGAATCTCAAG
ATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATGGAAGGCTCATGGATT
CAATTAGATTCAAAAAGTAAAGATGGTGACTCACCTGACACTTCACCAAA
ACTTTCTGATGATGAAGCAATGACCGAAGCATTGGCTGATGCTCAAAATG
AAATGGCTAAAAGTATCTTAAAGAAACCAAGCGTTCAAGAAGAAGAAGCT
GAACCATCTCAGaccAAGTCGTCAAAACGCGAGTCAAGAAAATCAATGTT
CAGTTTAAGAGGATCTTCTTTAATCGACTGcggATACGACGTAGCAAATC
ACCCAGCTGTTTACGTCTCATCACTCTTATTTTCACACACACTGGTATTT
GCTTTAGGGTTGATTGTTGGCAAGAAATTGGCATCACAACCAAGACTTTA
AATGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAA
TGGAAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGATGGTGACTCA
CCTGACACTTCACCAAAACTTTCTGATGATGAAGCAATGACCGAAGCATT
GGCTGATGCTCAAAATGAAATGGCTAAAAGTATCTTAAAGAAACCAAGCG
TTCAAGAAGAAGAAGCTGAACCATCTCAGaccAAGTCGTCAAAACGCGAG
TCAAGAAAATCAATGTTCAGTTTAAGAGGATCTTCTTTAATCGACTGcgg
ATACGACGTAGCAAATCACCCAGCTGTTTACGTCTCATCACTCTTATTTT
CACACACACTGGTATTTGCTTTAGGGTTGATTGTTGGCAAGAAATTGGCA
TCACAACCAAGACTTTAAATGAGTGAATCTCAAGATCCTGTTGTTCCTCC
AGTTGAACCAACCCAAATGGAAGGCTCATGGATTCAATTAGATTCAAAAA
GTAAAGATGGTGACTCACCTGACACTTCACCAAAACTTTCTGATGATGAA
GCAATGACCGAAGCATTGGCTGATGCTCAAAATGAAATGGCTAAAAGTAT
CTTAAAGAAACCAAGCGTTCAAGAAGAAGAAGCTGAACCATCTCAGaccA
AGTCGTCAAAACGCGAGTCAAGAAAATCAATGTTCAGTTTAAGAGGATCT
TCTTTAATCGACTGcggATACGACGTAGCAAATCACCCAGCTGTTTACGT
CTCATCACTCTTATTTTCACACACACTGGTATTTGCTTTAGGGTTGATTG
TTGGCAAGAAATTGGCATCACAACCAAGACTTTAAATGAGTGAATCTCAA
GATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATGGAAGGCTCATGGAT
TCAATTAGATTCAAAAAGTAAAGATGGTGACTCACCTGACACTTCACCAA
AACTTTCTGATGATGAAGCAATGACCGAAGCATTGGCTGATGCTCAAAAT
GAAATGGCTAAAAGTATCTTAAAGAAACCAAGCGTTCAAGAAGAAGAAGC
TGAACCATCTCAGaccAAGTCGTCAAAACGCGAGTCAAGAAAATCAATGT
TCAGTTTAAGAGGATCTTCTTTAATCGACTGcggATACGACGTAGCAAAT
CACCCAGCTGTTTACGTCTCATCACTCTTATTTTCACACACACTGGTATT
TGCTTTAGGGTTGATTGTTGGCAAGAAATTGGCATCACAACCAAGACTTT
AAATGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAA
ATGGAAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGATGGTGACTC
ACCTGACACTTCACCAAAACTTTCTGATGATGAAGCAATGACCGAAGCAT
TGGCTGATGCTCAAAATGAAATGGCTAAAAGTATCTTAAAGAAACCAAGC
GTTCAAGAAGAAGAAGCTGAACCATCTCAGaccAAGTCGTCAAAACGCGA
GTCAAGAAAATCAATGTTCAGTTTAAGAGGATCTTCTTTAATCGACTGcg
gATACGACGTAGCAAATCACCCAGCTGTTTACGTCTCATCACTCTTATTT
TCACACACACTGGTATTTGCTTTAGGGTTGATTGTTGGCAAGAAATTGGC
ATCACAACCAAGACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008614XLOC_008614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015419-proteinTCONS_00015419-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015419-exon-sc0000211-1491911889:97487..97640TCONS_00015419-exon-sc0000211-1491911889:97487..97640Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:97487..97640TCONS_00015419-exon-sc0000211-1510915933:97487..97640Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:97487..97640TCONS_00015419-exon-sc0000211-1575043694:97487..97640Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:98053..98176TCONS_00015419-exon-sc0000211-1491911889:98053..98176Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:98053..98176TCONS_00015419-exon-sc0000211-1510915933:98053..98176Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:98053..98176TCONS_00015419-exon-sc0000211-1575043694:98053..98176Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:98595..98643TCONS_00015419-exon-sc0000211-1491911889:98595..98643Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:98595..98643TCONS_00015419-exon-sc0000211-1510915933:98595..98643Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:98595..98643TCONS_00015419-exon-sc0000211-1575043694:98595..98643Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:98970..98995TCONS_00015419-exon-sc0000211-1491911889:98970..98995Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:98970..98995TCONS_00015419-exon-sc0000211-1510915933:98970..98995Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:98970..98995TCONS_00015419-exon-sc0000211-1575043694:98970..98995Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:99462..99503TCONS_00015419-exon-sc0000211-1491911889:99462..99503Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:99462..99503TCONS_00015419-exon-sc0000211-1510915933:99462..99503Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:99462..99503TCONS_00015419-exon-sc0000211-1575043694:99462..99503Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:99753..99830TCONS_00015419-exon-sc0000211-1491911889:99753..99830Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:99753..99830TCONS_00015419-exon-sc0000211-1510915933:99753..99830Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:99753..99830TCONS_00015419-exon-sc0000211-1575043694:99753..99830Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1491911889:100145..100697TCONS_00015419-exon-sc0000211-1491911889:100145..100697Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1510915933:100145..100697TCONS_00015419-exon-sc0000211-1510915933:100145..100697Clytia hemisphaericaexon
TCONS_00015419-exon-sc0000211-1575043694:100145..100697TCONS_00015419-exon-sc0000211-1575043694:100145..100697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:97487..100697 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8835	22.4959	16.3258	17.0311	14.7291	12.975	19.6184	20.9338	17.2873	19.6335	10.1165	9.52712	8.6417	5.45252	4.83712	9.22881	5.40214	6.82961	0.775222	0.995307	6.34836	5.93978	5.28716	9.32525	60.5219	54.1703	15.4732	8.99364	5.0507	3.8544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top