TCONS_00015377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015377
Unique NameTCONS_00015377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015377 ID=TCONS_00015377|Name=TCONS_00015377|organism=Clytia hemisphaerica|type=transcript|length=266bp
AGTTTGGCGTTATTTTATGATGAACTTGACGATGGTAAACAGAATATCTG
TTCCTATATTTAAAATGAAtagtcttttatttttcaaaagattgttcgtt
tttttttcttttgtacaTATATATACAGATTGTAAAAACGAAAATCAGAA
TTTTTCAGATGCATATTTACACCAGAAACGCACTGACATTTTGTACATAC
CTTTTATTTATGAGACATCTCCATAAGAGAATTAATAAAGCACCATAGAA
AAATATTCCTGTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000210:119121..119386

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015377 ID=TCONS_00015377|Name=TCONS_00015377|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0000210:119121..119386 (Clytia hemisphaerica)
TTTGACAGGAATATTTTTCTATGGTGCTTTATTAATTCTCTTATGGAGAT
GTCTCATAAATAAAAGGTATGTACAAAATGTCAGTGCGTTTCTGGTGTAA
ATATGCATCTGAAAAATTCTGATTTTCGTTTTTACAATCTGTATATATAt
gtacaaaagaaaaaaaaacgaacaatcttttgaaaaataaaagactaTTC
ATTTTAAATATAGGAACAGATATTCTGTTTACCATCGTCAAGTTCATCAT
AAAATAACGCCAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008600XLOC_008600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015377-exon-sc0000210-1491911889:119121..119386TCONS_00015377-exon-sc0000210-1491911889:119121..119386Clytia hemisphaericaexon
TCONS_00015377-exon-sc0000210-1510915933:119121..119386TCONS_00015377-exon-sc0000210-1510915933:119121..119386Clytia hemisphaericaexon
TCONS_00015377-exon-sc0000210-1575043694:119121..119386TCONS_00015377-exon-sc0000210-1575043694:119121..119386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:119121..119386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60218	1.75635	2.03929	0	4.04812	5.75798	14.6654	20.233	7.58873	6.26658	4.25774	5.19791	1.99642	4.56126	0.681813	1.09753	0	0.923887	2.5528	6.01047	5.80466	4.24696	2.75346	7.50989	0	4.60221	0	0	0.666357	2.03674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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