TCONS_00015357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015357
Unique NameTCONS_00015357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015357 ID=TCONS_00015357|Name=TCONS_00015357|organism=Clytia hemisphaerica|type=transcript|length=508bp
AATACGCATGAGAGTGAGGCTGTCCCAAGAGTCCGgatatatatcaaaac
aaaccatttgcatctaaactctgatatacaAAACATATATCAGAACCGAA
AATCTTGAAAGACTTTTAAGCTTTACTGCCAAAAATGAGTTCCTTAGTTG
GCAAATGTATTATGCAGCAGTGTTTATCAGCCAAACTGATGGTCAAGCCA
GCTGAAGATCAACCAAGGTGTTGTTGTGTTCATTTGTTTTCTAAAAGATG
CAGCAATCGATCATTTACCCAAAATTGTGAAATCCATACTTGAAGTTCGG
CTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGGACTTGCC
TGGTGACGTCCTGATCGTCCCTCAaGCCACTCTCGGTGGAAGAATGAAAG
GCAAAGCCATTCAATATCATAATAATGTTTCTAAGGAGCTTGGTCAACAG
TTGTATTCTGATTTCGTTGCACAGATCAAGGATAAAATGACGTCGAATTT
CTTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000210:175192..177736-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015357 ID=TCONS_00015357|Name=TCONS_00015357|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at sc0000210:175192..177736- (Clytia hemisphaerica)
AATACGCATGAGAGTGAGGCTGTCCCAAGAGTCCGGATATATATCAAAAC
AAACCATTTGCATCTAAACTCTGATATACAAAACATATATCAGAACCGAA
AATCTTGAAAGACTTTTAAGCTTTACTGCCAAAAATGAGTTCCTTAGTTG
GCAAATGTATTATGCAGCAGTGTTTATCAGCCAAACTGATGGTCAAGCCA
GCTGAAGGTGATGACAGCCCTGCTCAATATGTCCAAGTATATAAAATGTT
TGTGATCTGAATATTGTATTAACTTGTTCATGGTTATATACTTTAATTCA
TGAAACTCATTTGAAACGCAAACATAAATTTCAGGTACTTTTCCATCTTG
AATTTAACTGATTGTTTCGTGGACAAAAAGTATAATAATGACGAGGTATT
GAAGGGGAAAGAGTTAGATAGTTTGTGTATAAAATTACATTCCCCCTAAT
TGTCATTTAATTCAGATCAACCAAGGTGTTGTTGTGTTCATTTGTTTTCT
AAAAGATGCAGCAATCGATCATTTACCCAAAATTGGTGAGTTTCAAAGAA
GTCTCTTCATTTTCAAAAAATGCCTTTTGCTTGTATTACCACAAAGGAAG
AATGTGCTAAAATGTTGGATCCAAGTGTACCACAAATGTTCCAGGGCGTC
TCAGGAAATTAGACTGCAAATTCAGGTATTTGAATTCTGGTTGTTAGGAT
GTGCTGGTTAATCTTTCAAAAGCTTCTTTTGAGGTCATGAGCTCATGTTA
AATGTTAGACTAAAAGGTTTTCCTCGATTAACCAAATCAATGCCTTACTC
ATTTTGTATAATCTAGCTTTCATCTTGAGTAATGAGAGTAGGCCTACCCC
CCCCCCCCCAAAACTTTTTTCTCAAATTTTAAAAGACGGTTTTTTTTTTT
TTTTTAAAAAGAGGGTTTCTCTGGGGAAAAGGGGGGGGGGCCCCCCCCCC
CCCCAAGATATTTTCTCAAAATATTAAAGATATGTATCATTTCTTTATTA
TAGTGAAATCCATACTTGAAGTTCGGCTGTCCTTTTCTGAGGAAAATCAA
AAACGAGTTTCTATACTGGACTTGCCTGGTGACGTCCTGATCGTCCCTCA
AGTATTCATTTTATTTTATGATTCTTTCCATTTGGAATTTGGGCTATCTT
TGTGCTTTAGAGCAAAGCAGAGAACAAAGAGCTGAAATATACAATCTTTA
TGGCCCAAATAAAGGATTTTGCACAATGTTTTTTGATTCTCATATCTTGA
GGGTATCTAAATTTTTCAAATATTCTAAAACCACTGACCTTTGGGGAACA
AACTATGACACATACTTTAAAATTTTTAAGCCTGAGGTATGGTTTTGACA
GTTCACTTTTCACGCTGCCTATTTTAATTGTATAGACTATAGCCTATTGT
AATTGTGAGATAGGCAGAAGGTTTGCTGTCTAAAGTCAATGTATAGCATT
CTTTCAACGTCAATATGTAATGTAATCTCTTTCAATCTTTTCCAGGGAAG
ATTTTAACTGCCAACTTTCTGGCTACTTTAACAATAGAAGAAACAGTAGA
AATTCAGCCGTCTTAAAACCAGAGCTAAACCTCCCTTGCTGAAACTAAAA
GCTACCATTCAGTAATTAACGATTTCTATAATTTCAGGCCACTCTCGGTG
GAAGAATGAAAGGCAAAGCCATTCAGTAAGAACAAATACATTATAAACCA
TCATTCTGTGAAAATTTTTCAACAAGACCCACTGTCCTTTATAAACCATG
GGTCAAGCTATATCCCCCATTGATCGGAGTTTTTTCCAAAGTTCGACCGC
GCTATTATCCCAAATCAAAATAATAAAGGATAAGTAGATCGAGCTATACC
ATACATTATACCTCTATTGAGTAAGTGCTACCATTAGGGTACCACGTTCA
AAAAAACTCTGAGCAAAAGGTTCTGCTTGGCCGGGATTGAGAAAATACCT
CTAGGATTTATATAAAGCTCAGTGACCAGATCAAAAGAATTAGAGCCAAA
TCTACTTTTCATAATTTGACCATTTTCACCCGTTTGCAAAGTATCNAACT
AATGCCAAATCTACTTTTCATAATTTGACCATTTTCACCCGTTTGGAAAG
TATTTATTATTTATTTATCATGTTGGAAAAAAAACTTTTATACAAACGAT
TTATATACTCTCCATAGTTCTAAAACCACAATTTTTCATTTCTTCTTCTT
TTTTATATCCTACCTTTTTGTTTAGATATCATAATAATGTTTCTAAGGAG
CTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGTTAGTGC
TTTAGTGAGAATTGCAATTTTTATCTTGCTCAAAAAATGGTGTTTCATGA
CAATATATTACAATATATATAATATAAACTTGAACTTTGATGGGTCAAAA
GCTATACTGAATAATTATTTGAAGGGGTATACCCTCTATGAAACATCCGT
AATGACCCATCAAAATTTAAGTTGATTCTTTCAAAACAGGGTAAATTATT
TCTGGCACGCCTGATAGGATAAAATGACGTCGAATTTCTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008583XLOC_008583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015357-exon-sc0000210-1575043694:177530..177736TCONS_00015357-exon-sc0000210-1575043694:177530..177736Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1575043694:177202..177271TCONS_00015357-exon-sc0000210-1575043694:177202..177271Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1575043694:176636..176733TCONS_00015357-exon-sc0000210-1575043694:176636..176733Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1575043694:176062..176099TCONS_00015357-exon-sc0000210-1575043694:176062..176099Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1575043694:175445..175511TCONS_00015357-exon-sc0000210-1575043694:175445..175511Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1575043694:175192..175219TCONS_00015357-exon-sc0000210-1575043694:175192..175219Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:177530..177736TCONS_00015357-exon-sc0000210-1510915933:177530..177736Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:177202..177271TCONS_00015357-exon-sc0000210-1510915933:177202..177271Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:176636..176733TCONS_00015357-exon-sc0000210-1510915933:176636..176733Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:176062..176099TCONS_00015357-exon-sc0000210-1510915933:176062..176099Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:175445..175511TCONS_00015357-exon-sc0000210-1510915933:175445..175511Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1510915933:175192..175219TCONS_00015357-exon-sc0000210-1510915933:175192..175219Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:177530..177736TCONS_00015357-exon-sc0000210-1491911889:177530..177736Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:177202..177271TCONS_00015357-exon-sc0000210-1491911889:177202..177271Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:176636..176733TCONS_00015357-exon-sc0000210-1491911889:176636..176733Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:176062..176099TCONS_00015357-exon-sc0000210-1491911889:176062..176099Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:175445..175511TCONS_00015357-exon-sc0000210-1491911889:175445..175511Clytia hemisphaericaexon
TCONS_00015357-exon-sc0000210-1491911889:175192..175219TCONS_00015357-exon-sc0000210-1491911889:175192..175219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:175192..177736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.24186	7.45616	5.91896	7.26146	11.7253	8.39352	11.0894	11.5973	3.24663	4.61466	5.79669	3.64712	2.23979	1.80249	5.04822	4.35257	4.74624	4.87826	0	2.96338	0.745132	2.0136	5.28309	4.72449	3.29021	5.75334	2.61059	0.00146649	2.6807	0.818313
Blast
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BLAST of TCONS_00015357 vs. Swiss-Prot (Human)
Match: DTD2 (Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo sapiens GN=DTD2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.019e-29
Identity = 50/102 (49.02%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:  193 SSQLKINQGVVVFICFLKDAAIDHLPKIVKSILEVRLSFSEENQKRVSILDLPGDVLIVPQATLGGRMKGKAIQYHNNVSKELGQQLYSDFVAQIKDKMTSN 498
            +  +++ +G+V+++CF K A  + LPK+V ++L V+LS   EN K VSILDLPG++LI+PQATLGGR+KG+ +QYH+N  KE G +LYS FV   + ++ +N
Sbjct:   33 AQWVEVQRGLVIYVCFFKGADKELLPKMVNTLLNVKLS-ETENGKHVSILDLPGNILIIPQATLGGRLKGRNMQYHSNSGKEEGFELYSQFVTLCEKEVAAN 133
The following BLAST results are available for this feature:
BLAST of TCONS_00015357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTD21.019e-2949.02Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo s... [more]
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