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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015351 ID=TCONS_00015351|Name=TCONS_00015351|organism=Clytia hemisphaerica|type=transcript|length=1990bpRun BLAST on NCBI protein sequence of TCONS_00015351-protein >TCONS_00015351-protein ID=TCONS_00015351-protein|Name=TCONS_00015351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MTSSTIMATKKKLSKKKSSSIEGKRGTNGRDNTRRRKSKMKEKEDTLTVVRun BLAST on NCBI transcript from alignment at sc0000210:125415..150530- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015351 ID=TCONS_00015351|Name=TCONS_00015351|organism=Clytia hemisphaerica|type=transcript|length=25116bp|location=Sequence derived from alignment at sc0000210:125415..150530- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000210:125415..150530- >TCONS_00015351 ID=TCONS_00015351|Name=TCONS_00015351|organism=Clytia hemisphaerica|type=CDS|length=18525bp|location=Sequence derived from alignment at sc0000210:125415..150530- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015351 vs. Swiss-Prot (Human)
Match: KIF19 (Kinesin-like protein KIF19 OS=Homo sapiens GN=KIF19 PE=2 SV=2) HSP 1 Score: 501.13 bits (1289), Expect = 3.528e-164 Identity = 247/452 (54.65%), Postives = 333/452 (73.67%), Query Frame = 3
Query: 690 KEDTLTVVVRIRPISVNEVDNGYSEIITAVEDNMVCLLDPTENDDMNVLRVNRSREKMYVFDNAFGPFSTQTEVYNQTTRTLVESVLEGYNATIFAYGPTGAGKTFTMLGTDSEPGIMALTLNDLYRQMENSKGNELYTVSMSYLEIYNEMIRDLLNPSSDFLDLREDYRGV-QVAGLTSYEARDTSHVMEMLSRGNKERMCEPTAVNKTSSRSHAVLQVTVEQKSSIRDVSEEIKTAKLFMIDLAGSERAAQTQNTGKRFIEGAHINRSLLALGNCINALAEKGS-KYINYRDSKLTRLLKDSLGGNCKTVMIAHVSPASGSFEESRNTLMYADRAKNIKLKAKRNQHSVNYHVSQYQGIISELREEVIKLKAQLVEAE-----------------TIETRPTAMSADRQTIEKLKDNLKKKFQEQLELRKELIDLEDSSLQFAVEYQRYL 1988
K+ L V +R+RPISV E++ G + I V++ MV L+DP E+ D ++LR +RSREK Y+FD AF +TQ VY TT++L+E V+ GYNAT+FAYGPTG GKT+TMLGTD EPGI TLNDL+R +E + + Y VSMSYLEIYNEMIRDLLNPS +L+LRED +GV QVAG+T + +M++L +GN++R EPTA N+TSSRSHAVLQVTV Q+S ++++ +E++ +LFMIDLAGSERA+QTQN G+R EGAHINRSLLALGNCINAL++KGS KYINYRDSKLTRLLKDSLGGN +TVMIAH+SPAS +FEESRNTL YA RAKNIK + K+N +V+YH++QY II++LR E+ +LK ++ E E + + ++ + +L++ L FQEQ+++R+ L++LE+ +++ ++ R+L
Sbjct: 8 KDQQLMVALRVRPISVAELEEGATLIAHKVDEQMVVLMDPMEDPD-DILRAHRSREKSYLFDVAFDFTATQEMVYQATTKSLIEGVISGYNATVFAYGPTGCGKTYTMLGTDQEPGIYVQTLNDLFRAIEETSNDMEYEVSMSYLEIYNEMIRDLLNPSLGYLELREDSKGVIQVAGITEVSTINAKEIMQLLMKGNRQRTQEPTAANQTSSRSHAVLQVTVRQRSRVKNILQEVRQGRLFMIDLAGSERASQTQNRGQRMKEGAHINRSLLALGNCINALSDKGSNKYINYRDSKLTRLLKDSLGGNSRTVMIAHISPASSAFEESRNTLTYAGRAKNIKTRVKQNLLNVSYHIAQYTSIIADLRGEIQRLKRKIDEQTGRGQARGRQDRGDIRHIQAEVQLHSGQGEKAGMGQLREQLASAFQEQMDVRRRLLELENRAMEVQIDTSRHL 458 The following BLAST results are available for this feature:
BLAST of TCONS_00015351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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