TCONS_00015345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015345
Unique NameTCONS_00015345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015345 ID=TCONS_00015345|Name=TCONS_00015345|organism=Clytia hemisphaerica|type=transcript|length=620bp
ATGACTTGATCTGACCCATGTAAACAACCAACCGCCACACAAGTCCACCC
TCTGCCCATCATGGCTACAATGTCGATGAAAAGCCTTCTTCATTCCGATG
ACGAAAGTGATGAAATCGCCCAGCCCATCACTCCAACCACCCATCCGCCC
TCAGTTACTGTTTCGGGCGCCAGAGGGTCCGCCCTGAAATCGATGTTTAG
CAAAGGGACGAAGAGACTGTCAAGTCATTTCCAAGAAGGACAAAAAAAAC
ATCTGGTTGTCAATTCACCGAATGCTGGAGCAAGCTCTATTAACGATTCC
GAGGCACCAACTGCAACTGCATCGACCTCCTCTGCTGGATGGATCAAGGA
CAAAGTAACTGGGTCTCTCATGAATCGCTTAGCAACAAACAAGAATGTCT
ACGCCTCCATGGATACCGTGCATCCAGACGCGTCCTTAGCAACAACAAAT
GATGATGCGCCAAAACTATCAAAAGCACAATCGGAAATGACTCTCAAAAG
TTCTTTGTCGACTGGAAATATAAGTCAAACAGATGGAGGAGGATCAAAAC
GTCAATGGCTCAAAGGTCAAATCACTTCCTATCTATCCAAATCCAAAACT
ACGGAAAATCTAAGTTCTGC
Run BLAST on NCBI

transcript from alignment at sc0000210:106585..109691-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015345 ID=TCONS_00015345|Name=TCONS_00015345|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at sc0000210:106585..109691- (Clytia hemisphaerica)
ATGACTTGATCTGACCCATGTAAACAACCAACCGCCACACAAGTCCACCC
TCTGCCCATCATGGCTACAATGTCGATGAAAAGCCTTCTTCATTCCGATG
ACGAAAGTGATGAAATCGCCCAGCCCATCACTCCAACCACCCATCCGCCC
TCAGTTACTGTTTCGGGCGCCAGAGGGTCCGCCCTGAAATCGATGTTTAG
CAAAGGGACGAAGAGACTGTCAAGTCATTTCCAAGAAGGACAAAAAAAAC
ATCTGGTTGTCAATTCACCGAATGCTGGAGCAAGCTCTATTAACGATTCC
GAGGTGAGATTCTCTATGAATATAATACAGTTGATGCTCTCTGATTCGAT
ATTCTACTATTCGATACTCGGCAACTTCGCCACCAATACGGTTTTACTGA
CCCTGTATATCCCGTATCCCACCTCGAGAAGACCGTGTAACTAATATTAT
TCGATGATTTTGAAAGCTACCGTCAACAAGAAACTCTCATAAACAGCGCT
CTACTATTTAATACTCTCCCTTATTCGATGAAAATCCAATTTCCCCTGGA
AATCGAATTAGAGAGGGTCAACTGTAGCACAAAACGGATGACCAAATTAC
CTTCCAATCTCTTCAATTCAATTTGGAATAAAGAGAAGAATATAATATTT
CAAATATAAAAAATCCATAGATTCATTAATCCCGTATCGATCATACTCTA
GACCAACTTTGGGGTAATCGAATTTCTTTCGAGCCTCATTTTCAATATAT
GTCATTCTCGTGATTCATTAACACGTTCGATGCCGACCTTAGTAGTACTT
TCTGACAATAACTTTTTTTTTGCATTTTTGGAATCTAAGTGAAATTCAGC
GCCGCTGCCGATTGATATTCAATTTGAAGACATTTGAAGTCAAATTTCGA
TTTCTAAAAAAAAATGTCGTAATGTTCGAGTGATCTCAGCCCAATCAGAG
TTTGTTTTTTCTCACTTTAAGTTTTCATGGTTTTATGCGAAGCTGTATTT
GAATCTTTTTTTCTTCATCTCACCCAGGCACCAACTGCAACTGCATCGAC
CTCCTCTGCTGGATGGATCAAGGACAAAGTAACTGGGTCTCTCATGAATC
GCTTAGCAACAAACAAGAATGTCTACGCCTCCATGGATACCGTGCATCCA
GACGCGTCCTTAGCAACAACAAATGATGATGCGCCAAAACTATCAAAAGC
ACAATCGGAAATGACTCTCAAAAGTTCTTTGTCGACTGGGTATGAGCTAG
TCCTTATTGTTCCTTAGGTTCTTTGCAAGATTTGAATCAAGATCTTCATC
AAAAACCTGGATTTTTTATTCGCTTTCTTGGTGAGGTAAGCCCGGTCTCC
ACTTGCGCGCGCTGCGATCGCACTTTTTCGAGCAAGTCTATTTCGCTATT
GATCAAAAGAAAAATGAAACAATTGCATTGGCGCGATCTGACGTAACGGT
TGAAAAAAGTTGAAATGTGTTTTCGAGCGTGCGCTACATTTTTATTACGT
AATCTTTTTTCCAACCAAAAAGGATTGAAGCCAAAAGGTGCGATTGCAGC
GCGCGCACGTGGAGACCGGCCTTTACACTTTGATGATTTTTCTCAAAAAA
AGAAGCCTTTCAAGTGCTCTAAAGCAAATTCGATTTTTTTTACCCCTGCA
AGAGATTCGAAAGTTCAAATAAAGTGACCTTAAAAAAACGTCCGAAAACC
TGAGTTCCAAACATTCGAAAAGGTTACGTCAACTTCGACCAATGGAATTG
CTTCATTTTTCAAAATTACAAAAACGTCAAAAAGTTTTCGCTCATGTCGC
GCGAAAGTGGAGACCGGCCTTAAAAAAACGTCCGAAAACCTGAGTTCAAA
AGGTTACTGTGTAGAAAAAGCTGTAACGTTTTCTAGTATAGGTTAGAATT
GACGGTACTGTGCAGAAAAAAGTCGTTACGTCTAATATAAAGGATATTTT
CGAGTCGTGTTCAAAGCTTGCGTTGTGGCAGCCAATTTTCAGTCCAAGTC
GAAACGAAGCTATCCTTTTGGCGAGTAATCATTGACATGTGAGAGTTGCT
TTATATTGTAAAGTTGATTCGCAATTTAGGCCTGACATACACATCTCTTG
TTGTTTTGAACGTTTCTCTTCTCAACTCTGAAATAATTCGCTTATCTTAA
GTACATTAAAGTATTTATTATAAGAGTTTGATTAAAGTTTAGTTATTCCT
TCTCCGTCTTCTCTTTGAGACGGCCGCTCGGGTACGAGACGACGAACCGG
GCCGACTTTTCAACCTTTTCTTATCTGCTGGTCAAATTTTAATTAATACA
CTCTTCTTGAGATGCATAAATTTATTGTTGTCCTCGTTTTCAAACAGATT
TCATTGCTATAAAATTACATATGCACAATGATAATTATGTTGTTTACACC
TCATGAGACATTTTGAATTTCAAGTACTTTTGTTTTAGAGTTAATGTTTG
CCTTTTGGGAATTTAAATTAGTTTAAATGTATAATTTCATAGCAATGAAA
TCTGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTG
TATTAATTTCTTCTTGTTAAGCTGGCGGGTGACTCTAGAGTGGTAGGAGA
TGCTTACTCGAGGAGTCTGCTAAATTACGTGCCTCATGTGCCCTAGTGCC
TTAACTTTTTTTACGTGCCTCTAGTGTCCTAGTGCCTCAAGTGCCTTAGT
GCCTCAAGTGCCCTAGTGCCCTAGTGCCTTAAAATCTCACTTGCCCTAGT
GCCCTAAAATTTTTACGTGCTCTAAAATTTTTACGAATTTTCAAAATTCA
GGGCAGCAGACTCTTACTCGAGGTACCGCACCTAATCTCAGACTTCAGGC
TTCATCTTTTCGCTTCCTTTTGTGTCTCGTACATTCTTTTTGTCATTTAT
TGTCTGTACTAGTGTTATTTTTTAGTCGTCTTATTTATGTTCTTATTGTG
TATGTTGGTCGCTTGTTTGTATTTTCTTCAGTTCTATAATTCTCTCTTTC
AGAAATATAAGTCAAACAGATGGAGGAGGATCAAAACGTCAATGGCTCAA
AGGTCAAATCACTTCCTATCTATCCAAATCCAAAACTACGGAAAATCTAA
GTTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008579XLOC_008579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015345-exon-sc0000210-1575043694:109389..109691TCONS_00015345-exon-sc0000210-1575043694:109389..109691Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1575043694:108453..108664TCONS_00015345-exon-sc0000210-1575043694:108453..108664Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1575043694:106585..106689TCONS_00015345-exon-sc0000210-1575043694:106585..106689Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1510915933:109389..109691TCONS_00015345-exon-sc0000210-1510915933:109389..109691Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1510915933:108453..108664TCONS_00015345-exon-sc0000210-1510915933:108453..108664Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1510915933:106585..106689TCONS_00015345-exon-sc0000210-1510915933:106585..106689Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1491911889:109389..109691TCONS_00015345-exon-sc0000210-1491911889:109389..109691Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1491911889:108453..108664TCONS_00015345-exon-sc0000210-1491911889:108453..108664Clytia hemisphaericaexon
TCONS_00015345-exon-sc0000210-1491911889:106585..106689TCONS_00015345-exon-sc0000210-1491911889:106585..106689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:106585..109691 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.499812	0	0	0	0	0.0189644	0	0	0	0	0	0	0	0	0	0	0	0.271738	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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