TCONS_00015308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015308
Unique NameTCONS_00015308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015308 ID=TCONS_00015308|Name=TCONS_00015308|organism=Clytia hemisphaerica|type=transcript|length=2358bp
TATAAATACGCTGATCACTCAGAAAGGATACCATACCGAATATTCGTAAA
CAAGAAATATTATGATAAACCAAGATGGctgcattttttaaatatatttg
tCGTTTTGAAAATTGTCAGAAGAAGTTTAATACATTATTTGACTTGATCA
ATCATATAGAGTACTCTCACATTTCTCGCGATCCAAttctactgaaacaa
caagaACTTTCTCAGCCACCAGCAGTAGCTTTGAGTTATGTCAACTGCTT
CTTCTCCGATCAATTCAAGAACACTCCACTGGACACTGATGCTGAATTAC
CAAGCAATTTCACGGTGAAGAAGTTAGGGAGAAGTAAGATTTTTGATAGG
AGTACTAAACTTAATGATAGCCTCGAAAGTATGCTAGATGAGTCGGATAC
ATATTCTGATGCAGGGAGTGATGACTCGTGTCACTCTTGGTCAACAAGTG
CTAGTACCAATGCCTTCCATAATCCCCACAATGAAAACACCATTCCAAGT
TCATCTAATACCTTTACTAATGTTACTGCTTCAATAACTACTGAAAGTTT
GCAAGGAAAATTCACTTGTTTGGAAGATAGCGAAGGGAAGAAACGCTTTT
TGTGCACTGTACCAGGTTGtaccaaaaaatataaaaatatcaatGGAATA
AAGTATCATGTGAAAAATGGACATAATAAAAAGGAAACCTTGACAGGAGA
AGTTAAAAAGAATTATCTATGTCATTGTGGAAAAGCTTATAAAAGTCAAA
GTGGATTGAGGCATCATCAGAATACACAACACAATGCTAATGGGGGAAAC
AATGTTGGAAGTACGTCAAACAGTTCGACTACAACTACGCCTGTGAAGAA
TTCATTTACATCCACTTTTGAGGGGAAGAAACTTGATCACAATTTCAGAT
CTCAAAATAATCAATCTCTGCCTCCAGTTGCTGAAATGTGCCAAGCACCA
AACACAGCGCTGGTACCGGAATTGgctatttaatttatttttgatatcaA
ACCTAATTTAAttcatcattttattttatttctttttgttgACAATGTAG
ATATTTGAATTGTAGATATATCCTGCTTATTTATGTTTATTATAATAATG
AAcactttattattattttatagatttttttggaaaatcaaaaggTTATT
TGAAATgagatttattttcataatgatttaaaaattgctttaaaactttt
agacTCAACTTGAGCATAGTGATAAGGGAAACATCTTCAAACACAATTAG
gaggaatttcaaaatattatgctgTAGATGAGCACAAAATATTTCCTTGC
TGAGAAAAATCAGTGAGCAACCATTCAATAGAAACAGGTTTGCCTATACa
gaatattgtatttttaaccttttttgaaaCCCACTGTGGTTTAACCCATC
AATTattcaaaaaagtcatttgaaTAGGTGATAAATCAAAGCACCTATTT
AGGGTTCCCTGCTGATGACTTAGCTCTTTGCACGTATATGGTGCAAcctg
tttttaaatattcatcaaaacaagttttaatgaaaaattaatgaatttcT
CTGCATTCTTTCTTTCTATTTCTGTTAGAATAAATCCTCTcatgaatttt
tgaatttatttggaATCCCTACACTTTAAATGTTTAATACTTTCAATCTC
AAAGAAATTCAATAATAGATTACCTATTTAAAAAtggattatttaaaaaa
tgaggTCATATTGGCCCTACCACTCCAAACAATCAGCTAAACTTCCTTGC
AGTACTGTAGCTCAAATTATTAGCTTgtagtttgtttttaaatctgtttt
tttgtACATAAATGAATTTTCCTACTGTAAAAATGCAATATTATCTTTAA
TTAtatgttgattttgaaaataaaaaaaaactttaacttaTGATTATCTT
ATCTAAAATTATATCAATAGTTTATTAGTCTAAAATTTTATGTCCTTACA
TGCATACACTGAAAGCAATTTAGATTTTTCCACAGTTGCAGTTgttattt
tttgaattgttgGGAACATTTTGATATGAAAATACTCTTTGTATGTgtat
taccttattacacgaatattactaggaaAGTATTCAACGGCTTTGAAATT
AACAagaattttattgctttttcaaggacaccatggCTGGTTTTGATTAA
GGGGCTTTtttattaacacaaaatttttaaattcgtgttaataaaatgac
tagtaatattcgtgtaatgaGGTATATGGGTTTTGAGCTCTAGATATCCC
TTTGTTGTGTGAGCATGTTACCTACTTAAATTTATCCTGGCATAACATAA
TAATAATACGATTTTATTGTGGCACCTTTTTTCTATTGGAAACACTTACA
GCTCTTAG
Run BLAST on NCBI

protein sequence of TCONS_00015308-protein

>TCONS_00015308-protein ID=TCONS_00015308-protein|Name=TCONS_00015308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MAAFFKYICRFENCQKKFNTLFDLINHIEYSHISRDPILLKQQELSQPPA
VALSYVNCFFSDQFKNTPLDTDAELPSNFTVKKLGRSKIFDRSTKLNDSL
ESMLDESDTYSDAGSDDSCHSWSTSASTNAFHNPHNENTIPSSSNTFTNV
TASITTESLQGKFTCLEDSEGKKRFLCTVPGCTKKYKNINGIKYHVKNGH
NKKETLTGEVKKNYLCHCGKAYKSQSGLRHHQNTQHNANGGNNVGSTSNS
STTTTPVKNSFTSTFEGKKLDHNFRSQNNQSLPPVAEMCQAPNTALVPEL
AI
Run BLAST on NCBI

transcript from alignment at sc0000208:184896..187253

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015308 ID=TCONS_00015308|Name=TCONS_00015308|organism=Clytia hemisphaerica|type=transcript|length=2358bp|location=Sequence derived from alignment at sc0000208:184896..187253 (Clytia hemisphaerica)
CTAAGAGCTGTAAGTGTTTCCAATAGAAAAAAGGTGCCACAATAAAATCG
TATTATTATTATGTTATGCCAGGATAAATTTAAGTAGGTAACATGCTCAC
ACAACAAAGGGATATCTAGAGCTCAAAACCCATATACCtcattacacgaa
tattactagtcattttattaacacgaatttaaaaattttgtgttaataaa
AAAGCCCCTTAATCAAAACCAGccatggtgtccttgaaaaagcaataaaa
ttctTGTTAATTTCAAAGCCGTTGAATACTttcctagtaatattcgtgta
ataaggtaatacACATACAAAGAGTATTTTCATATCAAAATGTTCCcaac
aattcaaaaaataacAACTGCAACTGTGGAAAAATCTAAATTGCTTTCAG
TGTATGCATGTAAGGACATAAAATTTTAGACTAATAAACTATTGATATAA
TTTTAGATAAGATAATCAtaagttaaagtttttttttattttcaaaatca
acataTAATTAAAGATAATATTGCATTTTTACAGTAGGAAAATTCATTTA
TGTacaaaaaaacagatttaaaaacaaactacAAGCTAATAATTTGAGCT
ACAGTACTGCAAGGAAGTTTAGCTGATTGTTTGGAGTGGTAGGGCCAATA
TGAcctcattttttaaataatccaTTTTTAAATAGGTAATCTATTATTGA
ATTTCTTTGAGATTGAAAGTATTAAACATTTAAAGTGTAGGGATtccaaa
taaattcaaaaattcatgAGAGGATTTATTCTAACAGAAATAGAAAGAAA
GAATGCAGAgaaattcattaatttttcattaaaacttgttttgatgaata
tttaaaaacaggTTGCACCATATACGTGCAAAGAGCTAAGTCATCAGCAG
GGAACCCTAAATAGGTGCTTTGATTTATCACCTAttcaaatgactttttt
gaatAATTGATGGGTTAAACCACAGTGGGtttcaaaaaaggttaaaaata
caatattctGTATAGGCAAACCTGTTTCTATTGAATGGTTGCTCACTGAT
TTTTCTCAGCAAGGAAATATTTTGTGCTCATCTAcagcataatattttga
aattcctcCTAATTGTGTTTGAAGATGTTTCCCTTATCACTATGCTCAAG
TTGAgtctaaaagttttaaagcaatttttaaatcattatgaaaataaatc
tcATTTCAAATAAccttttgattttccaaaaaaatctataaaataataat
aaagtgTTCATTATTATAATAAACATAAATAAGCAGGATATATCTACAAT
TCAAATATCTACATTGTcaacaaaaagaaataaaataaaatgatgaaTTA
AATTAGGTTtgatatcaaaaataaattaaatagcCAATTCCGGTACCAGC
GCTGTGTTTGGTGCTTGGCACATTTCAGCAACTGGAGGCAGAGATTGATT
ATTTTGAGATCTGAAATTGTGATCAAGTTTCTTCCCCTCAAAAGTGGATG
TAAATGAATTCTTCACAGGCGTAGTTGTAGTCGAACTGTTTGACGTACTT
CCAACATTGTTTCCCCCATTAGCATTGTGTTGTGTATTCTGATGATGCCT
CAATCCACTTTGACTTTTATAAGCTTTTCCACAATGACATAGATAATTCT
TTTTAACTTCTCCTGTCAAGGTTTCCTTTTTATTATGTCCATTTTTCACA
TGATACTTTATTCCattgatatttttatattttttggtaCAACCTGGTAC
AGTGCACAAAAAGCGTTTCTTCCCTTCGCTATCTTCCAAACAAGTGAATT
TTCCTTGCAAACTTTCAGTAGTTATTGAAGCAGTAACATTAGTAAAGGTA
TTAGATGAACTTGGAATGGTGTTTTCATTGTGGGGATTATGGAAGGCATT
GGTACTAGCACTTGTTGACCAAGAGTGACACGAGTCATCACTCCCTGCAT
CAGAATATGTATCCGACTCATCTAGCATACTTTCGAGGCTATCATTAAGT
TTAGTACTCCTATCAAAAATCTTACTTCTCCCTAACTTCTTCACCGTGAA
ATTGCTTGGTAATTCAGCATCAGTGTCCAGTGGAGTGTTCTTGAATTGAT
CGGAGAAGAAGCAGTTGACATAACTCAAAGCTACTGCTGGTGGCTGAGAA
AGTtcttgttgtttcagtagaaTTGGATCGCGAGAAATGTGAGAGTACTC
TATATGATTGATCAAGTCAAATAATGTATTAAACTTCTTCTGACAATTTT
CAAAACGacaaatatatttaaaaaatgcagCCATCTTGGTTTATCATAAT
ATTTCTTGTTTACGAATATTCGGTATGGTATCCTTTCTGAGTGATCAGCG
TATTTATA

Coding sequence (CDS) from alignment at sc0000208:184896..187253

>TCONS_00015308 ID=TCONS_00015308|Name=TCONS_00015308|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000208:184896..187253 (Clytia hemisphaerica)
ttaaatagcCAATTCCGGTACCAGCGCTGTGTTTGGTGCTTGGCACATTT
CAGCAACTGGAGGCAGAGATTGATTATTTTGAGATCTGAAATTGTGATCA
AGTTTCTTCCCCTCAAAAGTGGATGTAAATGAATTCTTCACAGGCGTAGT
TGTAGTCGAACTGTTTGACGTACTTCCAACATTGTTTCCCCCATTAGCAT
TGTGTTGTGTATTCTGATGATGCCTCAATCCACTTTGACTTTTATAAGCT
TTTCCACAATGACATAGATAATTCTTTTTAACTTCTCCTGTCAAGGTTTC
CTTTTTATTATGTCCATTTTTCACATGATACTTTATTCCattgatatttt
tatattttttggtaCAACCTGGTACAGTGCACAAAAAGCGTTTCTTCCCT
TCGCTATCTTCCAAACAAGTGAATTTTCCTTGCAAACTTTCAGTAGTTAT
TGAAGCAGTAACATTAGTAAAGGTATTAGATGAACTTGGAATGGTGTTTT
CATTGTGGGGATTATGGAAGGCATTGGTACTAGCACTTGTTGACCAAGAG
TGACACGAGTCATCACTCCCTGCATCAGAATATGTATCCGACTCATCTAG
CATACTTTCGAGGCTATCATTAAGTTTAGTACTCCTATCAAAAATCTTAC
TTCTCCCTAACTTCTTCACCGTGAAATTGCTTGGTAATTCAGCATCAGTG
TCCAGTGGAGTGTTCTTGAATTGATCGGAGAAGAAGCAGTTGACATAACT
CAAAGCTACTGCTGGTGGCTGAGAAAGTtcttgttgtttcagtagaaTTG
GATCGCGAGAAATGTGAGAGTACTCTATATGATTGATCAAGTCAAATAAT
GTATTAAACTTCTTCTGACAATTTTCAAAACGacaaatatatttaaaaaa
tgcagCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008558XLOC_008558Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015308-proteinTCONS_00015308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015308-exon-sc0000208-1491911889:184896..187253TCONS_00015308-exon-sc0000208-1491911889:184896..187253Clytia hemisphaericaexon
TCONS_00015308-exon-sc0000208-1510915933:184896..187253TCONS_00015308-exon-sc0000208-1510915933:184896..187253Clytia hemisphaericaexon
TCONS_00015308-exon-sc0000208-1575043694:184896..187253TCONS_00015308-exon-sc0000208-1575043694:184896..187253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:184896..187253 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89853	2.12505	2.69493	2.30422	10.3301	9.23707	11.8647	12.323	6.41333	5.68655	6.99138	7.7184	10.782	8.27815	4.21845	7.31617	10.5132	9.6032	7.35852	10.1921	14.4614	13.7104	7.04153	10.7385	9.27014	14.4586	9.99032	8.02785	4.89242	4.29385
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00015308 vs. Swiss-Prot (Human)
Match: JAZF1 (Juxtaposed with another zinc finger protein 1 OS=Homo sapiens GN=JAZF1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 3.309e-34
Identity = 82/230 (35.65%), Postives = 118/230 (51.30%), Query Frame = 3 
Query:   78 AAFFKYICRFENCQKKFNTLFDLINHIEYSHISRDPILLKQQELSQPPAVALSYVNCFFSDQFKNTPLDTDAELPSNFTVKKLGRSKIFDRSTKLNDSLESMLDESDTYSDAGSDDSCHSWSTSASTNAFHNPHNENTIPSSSNTFTNVTASITTESLQGKFTCLEDSEGKKRFLCTVPGCTKKYKNINGIKYHVKNGHNKKETLTGEVKKNYLCHCGKAYKSQSGLRHH 767
            A+FF   CRF  C   F TL DLI HIE +HI  DP +L++QEL QP  VALSY+N F +D  +        ++    ++         + ST    S  S+           S     S+ +S  T + ++    +   S S+      ++I++E++     C+   E +K F C VPGC K+YKN+NGIKYH KNGH  +      V+K + C CGK+YK+  GLRHH
Sbjct:    7 ASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS-----SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSM-CMNGGE-EKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQI----RVRKPFKCRCGKSYKTAQGLRHH 225
The following BLAST results are available for this feature:
BLAST of TCONS_00015308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JAZF13.309e-3435.65Juxtaposed with another zinc finger protein 1 OS=H... [more]
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