TCONS_00015276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015276
Unique NameTCONS_00015276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015276 ID=TCONS_00015276|Name=TCONS_00015276|organism=Clytia hemisphaerica|type=transcript|length=1661bp
AGATAGTAcagttaaaaaaaagtaaagtacaaaaaaatacaaattataaA
AATCGTATCTATCCTCTGAACACACTGATTGACGTTATTTATTGACATAC
ACGCGACGCAAGAACACATTCAAGATGGCAAAACACCTACAAAAAGGAAA
GATATCCAAATACGCTGATTTTGCCGACACATTTAGTAATTCATCAGAGA
TTGACACAGACTCATCTTACAGTGATGATGAAAATCTACCTTTCATTAAA
CCTGATAATAAATACTCCTCTTACAAAAGTATCACATCAACCGGGAGTAT
CGACCGCCAGGGTAGTATCTCTTCATCTATATTCACTCTAGTTTCCACCA
TGATTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTGAACAGGGCGGA
TTTCTAATGGCGTCATTttcactgatctttgttttgattgcatCAACTTA
TGGAGGATTTTTGATCATCAACAGCAAGAAATATTGTAATGGTAAAGTGA
GGAATATCGAAGATGTAGCTTACTATGCATTTGGAAAACTTGGAAAAATT
GGTGTGCAAATTTTGCTTATCATTGTACTTTATCTTTGCTCGGTTGCTTA
CTTCATACTCATTGTTGACCAgATGGAGCCCATCATTACATTAGCATCTA
ACGGTACAGCTGGTATTTGGAACAAGAAAGTCGTGTTATTGGCTTTTGTT
TTTGCAGTTGTCTTCCCTATTTCCTTATTCAGCAATCTGTCCGCTCTCAA
ACATACATCTATACTCAGCGTCCTGTGTGGTATTTTACTATGCTGTTGTG
TTACATACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTCGATAAACCG
AGTAATCCGGTCAAATGGCATCCGGATAGTTTACGTCAAACTCTAACCTG
TATTTCAATCACCGAATTAACTTTTTCATGTCATTTCAATATCCTACCAA
TGCACAGTGAACTTCAGCACCAGACGAGACGTAACAAACGAATTATTTTA
TTCTCTGCAATGGGCCTCACATACTTGATGAATTTCATTGTCAGTTTCTT
TGGATATTTTCagtTCCGTAGATTTACAGACCAAGATATTACACGTAATT
ACGCTTCTGACGATTACGTGGTGACGGTTGGACGTGCTGCACTTTGCGTT
TTGTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTGTCGCGCTACACT
TAACAAGATCTTTTGGCACCCGAACGAGCCGACACCCCAATGCTTGTtga
agatatcaaatccaactTTAACTGGACCAAATAAAATTGTCTGGTTCATA
GAATCCCTTATCCTGGTTGGAACAAGCTTCTTATTGGCTTATCTTGTACC
TCAGGTGAACATGGTTTGGGGTTTCGTTGGTTCCGTCGGTTGTACATTCT
TAATCTACATCATTCCGCCCGCTTTCTATCTGCGCGTTCGCCGACACCCG
CTAAAGCCAGATGTGAAGAAAGTATCGGCTATTTGCCTCTTGATTGTTGG
AGTTTTATTATTGGTTGCTGGGCTATATCAATCCATCATGAATATTATAT
CTCCATTACCGGAACTTAGACCGGAAGATAGAGTATTGCCGGATTCTTTT
AATCGGACTAACCTTTTTGGTTTTAATAATAATGTTAATATTAATATAAC
TAATAATTTTT
Run BLAST on NCBI

protein sequence of Amino acid transporter

>TCONS_00015276-protein ID=TCONS_00015276-protein|Name=Amino acid transporter|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MAKHLQKGKISKYADFADTFSNSSEIDTDSSYSDDENLPFIKPDNKYSSY
KSITSTGSIDRQGSISSSIFTLVSTMIGGGLLSLPFAFEQGGFLMASFSL
IFVLIASTYGGFLIINSKKYCNGKVRNIEDVAYYAFGKLGKIGVQILLII
VLYLCSVAYFILIVDQMEPIITLASNGTAGIWNKKVVLLAFVFAVVFPIS
LFSNLSALKHTSILSVLCGILLCCCVTYRSLKNQVGGPVDKPSNPVKWHP
DSLRQTLTCISITELTFSCHFNILPMHSELQHQTRRNKRIILFSAMGLTY
LMNFIVSFFGYFQFRRFTDQDITRNYASDDYVVTVGRAALCVLLVLSYPL
LIVPCRATLNKIFWHPNEPTPQCLLKISNPTLTGPNKIVWFIESLILVGT
SFLLAYLVPQVNMVWGFVGSVGCTFLIYIIPPAFYLRVRRHPLKPDVKKV
SAICLLIVGVLLLVAGLYQSIMNIISPLPELRPEDRVLPDSFNRTNLFGF
NNNVNINITNNF
Run BLAST on NCBI

transcript from alignment at sc0000208:110720..115116-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015276 ID=TCONS_00015276|Name=TCONS_00015276|organism=Clytia hemisphaerica|type=transcript|length=4397bp|location=Sequence derived from alignment at sc0000208:110720..115116- (Clytia hemisphaerica)
AGATAGTACAGTTAAAAAAAAGTAAAGTACAAAAAAATACAAATTATAAA
AATCGTATCTATCCTCTGAACACACTGATTGACGTTATTTATTGACATAC
ACGCGACGCAAGAACACATTCAAGATGGCAAAACACCTACAAAAAGGAAA
GATATCCAAATACGCTGATTTTGCCGACACATTTAGTAATTCATCAGAGA
TTGACACAGACTCATCTTACAGTGATGATGAAAATCTACCTTTCATTAAA
CCTGATAATAAATACTCCTCTTACAAAAGTATCACATCAACCGGGAGTAT
CGACCGCCAGGGTAGTATCTCTTCATCTATATTCACTCTAGTTTCCACCA
TGATTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTGAACAGGGCGGA
TTTCTAATGGCGTCATTTTCACTGATCTTTGTTTTGATTGCATCAACTTA
TGGAGGATTTTTGATCATCAACAGCAAGAAATATTGTAATGGTAAAGTGA
GGAATATCGAAGATGTAGCTTACTATGCATTTGGAAAACTTGGAAAAGTA
AGTTTGATTGCCTCATTGTCTTCTGTTTTATCAAAATGATTATTCTATTC
TTCAAAATTGATGTGAAAAAGTTTTTCTTAAAGTTTCATCTGTACTAAAA
AACTAGCCGTACTTGAAACTATTTCAAACTCTTTTCTGTTCATTTCATGC
CTGGGTTGATCAACAGAATCAGCATCCTTTAAACCGTCTAAAGTGTCTCC
CAGGCAGTCAGCNAGCATCCTTTAAACTTAAAAACCGTGTAAAGTGTCCC
CGGTCAGCTAGCTACCTTATATTGTAAGGTTATTTTTTAGGATCTTATTT
GAGCTTTGATTCTAATTTTAGATTGGTGTGCAAATTTTGCTTATCATTGT
ACTTTATCTTTGCTCGGTTGCTTACTTCATACTCATTGTTGACCAGGTAA
ATAATTGTTTTTCAAATTCAAATTGAACTAACTTTTGATCTTGCTGCTTC
CGTACTAATATGTTTTTTCATCTGTTGTAGTTAGGACAAACCTATGAAAT
TTGATACACTATTTATTTTGCAGTATATAGTTCTTAGACACTAAAGATAA
TTTTCCGCAAATGGAGAATTGATCGCGGGGTCAGACTTAAGTGTTTCATT
TTTTAAATGTTTTTAATAAACAAGAAACTATTCCTCCAATCTGTCAGAAT
TCATGATATTCATGACGTAATGTTTTCTACGGAAGTACCCCGGTTTTAGC
CAGTAGTGGCAAATTTAAACTAGAACAAAGTTGTATAAAATTTGCCACTA
CTGGCAAAAAACCGGGGTCTTTCCGTAGAAAACATTACGTCATGAATATC
ATGAATACATAATTATCCTTACATCTTTCAAAATTCCCATGTTCTTATTC
ATCATGGTATTCTCACCTCAAAAAAAACTTATCCCATTTTAGATGGAGCC
CATCATTACATTAGCATCTAACGGTACAGCTGGTATTTGGAACAAGAAAG
TCGTGTTATTGGCTTTTGTTTTTGCAGTTGTCTTCCCTATTTCCTTATTC
AGCAATCTGTCCGCTCTCAAACATACATCTATACTCAGGTAAGACCAATA
AAAGATAAATTATATCATGGACATAACATGGAATTTTCAAGATTCGAGAT
TCATGAGATAATCGCAGGCTTCACATTTCGATACAAATTGCTCCCAAAAA
TCATGAATTTTGAGCAGCTCTGATCGGATGTTTTGTCTTTATTTCGAGAC
CTGCGATCACAATGTAAAATATTTGATTTGCCACAATTTTTGCGTGCAGA
AATTTTAGCTCGCAACACACTTTAAATCAAATAAGGCAGCATAGCCTGGA
TGTTATGGAGTCGTGAGAATCCGTGTATCACAGTAATATAATAGGTGTTA
TACGAGAGTACCATAAGTTATTATTACGGGACAATTTTAATTTATCGACA
TGGAAAACTGTAAAGGGCTAAGTAATCAAAAGTGAACAAGCCACATACAA
AATAAAGTGCAGCGAGATCAATTTTTATTTTCAAAAATGAAATCTAACCT
TTTGATTGATCTCTCATTTTAGCGTCCTGTGTGGTATTTTACTATGCTGT
TGTGTTACATACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTCGATAA
ACCGAGTAATCCGGTCAAATGGCATCCGGATAGTTTACGTCAAACTCTAA
CCTGTATTTCAATCACCGAATTAACTTTTTCATGTCATTTCAATATCCTA
CCAATGCACAGTGAACTTCAGCACCAGACGAGACGTAACAAACGAATTAT
TTTATTCTCTGCAATGGGCCTCACATACTTGATGAATTTCATTGTCAGTT
TCTTTGGATATTTTCAGGTGAGTTTTTTTTTTGAAAATTGAACGATGAAA
TTAACTGGATCGGTATTTAATTCGGGTTAAGGTTTTTTTTGGAAAGGGGG
TAAATAGGGTTTATATATGTAATTATGTAATTAAATGTTTTTCGTAGGTT
TTGAAAAAAGTGATTTATAAGTACGTATAACTTATTAAAAATCTACCATT
ATGGAATAAAACGCTCGAATCTGAAGAGGCAACTGCTTTTATATCGTCTA
GTTTATCATCCGGGTAATCGTAAAAGACTTTAAATTACAAATCCTTTCTT
TAAGAAATGATGCCTGAAAAACCTCAATTAATATTGATATTTACATTTTT
CCCGATCTTTCTTTCTTTCTAGTTCCGTAGATTTACAGACCAAGATATTA
CACGTAATTACGCTTCTGACGATTACGTGGTGACGGTTGGACGTGCTGCA
CTTTGCGTTTTGTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTGTCG
CGCTACACTTAACAAGGTGAATTGATCGTTGTGTTTGATTGGGTCGAGTT
GATTAAAATTCTAAAAGCAATACAAAATAGCTAACACTTTTACTAGCTAC
CGCTGGTCTTAAACTTCTTCGAATCTCGAAATTTTGTATTCTCTGTTTGC
TGTCGATGGGAAAAGTCAGTCAAATTTTTTTTAAGACCTTCATTCTTTTT
TCCCAAAAATAAACCCTAAAATGGGAAGCTTTTTACCAGCAATGAAATTT
GAAAAAAAAATAATAAAACTAATATTGTGTTAATCCAACCCTTTTGAGAA
TTTCCTCTTTCTTTCATAAAAAATTTTTTGGTTATAGATCTTTTGGCACC
CGAACGAGCCGACACCCCAATGCTTGTTGAAGATATCAAATCCAACTTTA
ACTGGACCAAATAAAATTGTCTGGTTCATAGAATCCCTTATCCTGGTTGG
AACAAGCTTCTTATTGGCTTATCTTGTACCTCAGGTAGTTTTTTTAGAGT
CGACATTTTACGTGGATAGCCCAGTAATCTAGGACTTTTAGACAGTTTTT
CGATTGTTTTCACGGGGTCCCCGGCCAGCCGGCTCGGCTATCTATGAACT
AAATGAAACATTGGAAGGAGCGGGAATTAATGGTTTAGGGACTGGAACTG
GGGCGGAAAAATTAAAGCGATTCTGTGACATGCATTAAGTTACCCGATAA
TCCCTGGTTTTAGACGCTGACGCCTTTGACCACTTGGCCATCGCTCCCTC
CCTTTTTGAGATGGTTTTCTTGATTTACCAGTTGCAATTTGTGAATACTT
TAAAGGAAAGAACAAGTCTCCTATTTTTCGGTATTTCTGATGAAGATATA
TACTGTCAATATCTTTGTCAATATTGTAAATATGTACGGTTCAAATACAA
CGCATCTACGATCTAAAAGCAACCTTGTTGCTATAATACGATAATGGTCA
GCAATTATAGCTCCACATCATTCCAAAATGAAACGGCTCCGAAACACATA
CACGGGTTGCAAAATTATATCAGTACAGTCAAAACATGTGATTACTCGAA
AAAGTTCACGTGATTTATTCCCATGTTACATACTTATCGTTAAACTTACA
GATGAACCAATCAGAAATAAATGTCATGTAGCAAGCACATAAAAATTTCG
AGTAAAAGTGTGATTTGTTTTCAGATTTTAATTTAGCAACCTGTGTATTG
GCGATGTTTATCAAAAATTTATTTTTTTATTTCATCTTAGGTGAACATGG
TTTGGGGTTTCGTTGGTTCCGTCGGTTGTACATTCTTAATCTACATCATT
CCGCCCGCTTTCTATCTGCGCGTTCGCCGACACCCGCTAAAGCCAGATGT
GAAGAAAGTATCGGCTATTTGCCTCTTGATTGTTGGAGTTTTATTATTGG
TTGCTGGGCTATATCAATCCATCATGAATATTATATCTCCATTACCGGAA
CTTAGACCGGAAGATAGAGTATTGCCGGATTCTTTTAATCGGACTAACCT
TTTTGGTTTTAATAATAATGTTAATATTAATATAACTAATAATTTTT

Coding sequence (CDS) from alignment at sc0000208:110720..115116-

>TCONS_00015276 ID=TCONS_00015276|Name=TCONS_00015276|organism=Clytia hemisphaerica|type=CDS|length=10752bp|location=Sequence derived from alignment at sc0000208:110720..115116- (Clytia hemisphaerica)
GTGAACATGGTTTGGGGTTTCGTTGGTTCCGTCGGTTGTACATTCTTAAT
CTACATCATTCCGCCCGCTTTCTATCTGCGCGTTCGCCGACACCCGCTAA
AGCCAGATGTGAAGAAAGTATCGGCTATTTGCCTCTTGATTGTTGGAGTT
TTATTATTGGTTGCTGGGCTATATCAATCCATCATGAATATTATATCTCC
ATTACCGGAACTTAGACCGGAAGATAGAGTATTGCCGGATTCTTTTAATC
GGACTAACCTTTTTGGTTTTAATAATAATGTTAATATTAATATAACTAAT
AATTTTATCTTTTGGCACCCGAACGAGCCGACACCCCAATGCTTGTTGAA
GATATCAAATCCAACTTTAACTGGACCAAATAAAATTGTCTGGTTCATAG
AATCCCTTATCCTGGTTGGAACAAGCTTCTTATTGGCTTATCTTGTACCT
CAGTTCCGTAGATTTACAGACCAAGATATTACACGTAATTACGCTTCTGA
CGATTACGTGGTGACGGTTGGACGTGCTGCACTTTGCGTTTTGTTGGTGT
TAAGTTATCCGTTGTTGATCGTCCCTTGTCGCGCTACACTTAACAAGCGT
CCTGTGTGGTATTTTACTATGCTGTTGTGTTACATACCGTTCACTGAAAA
ATCAAGTTGGTGGTCCGGTCGATAAACCGAGTAATCCGGTCAAATGGCAT
CCGGATAGTTTACGTCAAACTCTAACCTGTATTTCAATCACCGAATTAAC
TTTTTCATGTCATTTCAATATCCTACCAATGCACAGTGAACTTCAGCACC
AGACGAGACGTAACAAACGAATTATTTTATTCTCTGCAATGGGCCTCACA
TACTTGATGAATTTCATTGTCAGTTTCTTTGGATATTTTCAGATGGAGCC
CATCATTACATTAGCATCTAACGGTACAGCTGGTATTTGGAACAAGAAAG
TCGTGTTATTGGCTTTTGTTTTTGCAGTTGTCTTCCCTATTTCCTTATTC
AGCAATCTGTCCGCTCTCAAACATACATCTATACTCAGATTGGTGTGCAA
ATTTTGCTTATCATTGTACTTTATCTTTGCTCGGTTGCTTACTTCATACT
CATTGTTGACCAGATGGCAAAACACCTACAAAAAGGAAAGATATCCAAAT
ACGCTGATTTTGCCGACACATTTAGTAATTCATCAGAGATTGACACAGAC
TCATCTTACAGTGATGATGAAAATCTACCTTTCATTAAACCTGATAATAA
ATACTCCTCTTACAAAAGTATCACATCAACCGGGAGTATCGACCGCCAGG
GTAGTATCTCTTCATCTATATTCACTCTAGTTTCCACCATGATTGGGGGT
GGACTTCTCTCCTTACCTTTCGCCTTTGAACAGGGCGGATTTCTAATGGC
GTCATTTTCACTGATCTTTGTTTTGATTGCATCAACTTATGGAGGATTTT
TGATCATCAACAGCAAGAAATATTGTAATGGTAAAGTGAGGAATATCGAA
GATGTAGCTTACTATGCATTTGGAAAACTTGGAAAAGTGAACATGGTTTG
GGGTTTCGTTGGTTCCGTCGGTTGTACATTCTTAATCTACATCATTCCGC
CCGCTTTCTATCTGCGCGTTCGCCGACACCCGCTAAAGCCAGATGTGAAG
AAAGTATCGGCTATTTGCCTCTTGATTGTTGGAGTTTTATTATTGGTTGC
TGGGCTATATCAATCCATCATGAATATTATATCTCCATTACCGGAACTTA
GACCGGAAGATAGAGTATTGCCGGATTCTTTTAATCGGACTAACCTTTTT
GGTTTTAATAATAATGTTAATATTAATATAACTAATAATTTTATCTTTTG
GCACCCGAACGAGCCGACACCCCAATGCTTGTTGAAGATATCAAATCCAA
CTTTAACTGGACCAAATAAAATTGTCTGGTTCATAGAATCCCTTATCCTG
GTTGGAACAAGCTTCTTATTGGCTTATCTTGTACCTCAGTTCCGTAGATT
TACAGACCAAGATATTACACGTAATTACGCTTCTGACGATTACGTGGTGA
CGGTTGGACGTGCTGCACTTTGCGTTTTGTTGGTGTTAAGTTATCCGTTG
TTGATCGTCCCTTGTCGCGCTACACTTAACAAGCGTCCTGTGTGGTATTT
TACTATGCTGTTGTGTTACATACCGTTCACTGAAAAATCAAGTTGGTGGT
CCGGTCGATAAACCGAGTAATCCGGTCAAATGGCATCCGGATAGTTTACG
TCAAACTCTAACCTGTATTTCAATCACCGAATTAACTTTTTCATGTCATT
TCAATATCCTACCAATGCACAGTGAACTTCAGCACCAGACGAGACGTAAC
AAACGAATTATTTTATTCTCTGCAATGGGCCTCACATACTTGATGAATTT
CATTGTCAGTTTCTTTGGATATTTTCAGATGGAGCCCATCATTACATTAG
CATCTAACGGTACAGCTGGTATTTGGAACAAGAAAGTCGTGTTATTGGCT
TTTGTTTTTGCAGTTGTCTTCCCTATTTCCTTATTCAGCAATCTGTCCGC
TCTCAAACATACATCTATACTCAGATTGGTGTGCAAATTTTGCTTATCAT
TGTACTTTATCTTTGCTCGGTTGCTTACTTCATACTCATTGTTGACCAGA
TGGCAAAACACCTACAAAAAGGAAAGATATCCAAATACGCTGATTTTGCC
GACACATTTAGTAATTCATCAGAGATTGACACAGACTCATCTTACAGTGA
TGATGAAAATCTACCTTTCATTAAACCTGATAATAAATACTCCTCTTACA
AAAGTATCACATCAACCGGGAGTATCGACCGCCAGGGTAGTATCTCTTCA
TCTATATTCACTCTAGTTTCCACCATGATTGGGGGTGGACTTCTCTCCTT
ACCTTTCGCCTTTGAACAGGGCGGATTTCTAATGGCGTCATTTTCACTGA
TCTTTGTTTTGATTGCATCAACTTATGGAGGATTTTTGATCATCAACAGC
AAGAAATATTGTAATGGTAAAGTGAGGAATATCGAAGATGTAGCTTACTA
TGCATTTGGAAAACTTGGAAAAGTGAACATGGTTTGGGGTTTCGTTGGTT
CCGTCGGTTGTACATTCTTAATCTACATCATTCCGCCCGCTTTCTATCTG
CGCGTTCGCCGACACCCGCTAAAGCCAGATGTGAAGAAAGTATCGGCTAT
TTGCCTCTTGATTGTTGGAGTTTTATTATTGGTTGCTGGGCTATATCAAT
CCATCATGAATATTATATCTCCATTACCGGAACTTAGACCGGAAGATAGA
GTATTGCCGGATTCTTTTAATCGGACTAACCTTTTTGGTTTTAATAATAA
TGTTAATATTAATATAACTAATAATTTTATCTTTTGGCACCCGAACGAGC
CGACACCCCAATGCTTGTTGAAGATATCAAATCCAACTTTAACTGGACCA
AATAAAATTGTCTGGTTCATAGAATCCCTTATCCTGGTTGGAACAAGCTT
CTTATTGGCTTATCTTGTACCTCAGTTCCGTAGATTTACAGACCAAGATA
TTACACGTAATTACGCTTCTGACGATTACGTGGTGACGGTTGGACGTGCT
GCACTTTGCGTTTTGTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTG
TCGCGCTACACTTAACAAGCGTCCTGTGTGGTATTTTACTATGCTGTTGT
GTTACATACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTCGATAAACC
GAGTAATCCGGTCAAATGGCATCCGGATAGTTTACGTCAAACTCTAACCT
GTATTTCAATCACCGAATTAACTTTTTCATGTCATTTCAATATCCTACCA
ATGCACAGTGAACTTCAGCACCAGACGAGACGTAACAAACGAATTATTTT
ATTCTCTGCAATGGGCCTCACATACTTGATGAATTTCATTGTCAGTTTCT
TTGGATATTTTCAGATGGAGCCCATCATTACATTAGCATCTAACGGTACA
GCTGGTATTTGGAACAAGAAAGTCGTGTTATTGGCTTTTGTTTTTGCAGT
TGTCTTCCCTATTTCCTTATTCAGCAATCTGTCCGCTCTCAAACATACAT
CTATACTCAGATTGGTGTGCAAATTTTGCTTATCATTGTACTTTATCTTT
GCTCGGTTGCTTACTTCATACTCATTGTTGACCAGATGGCAAAACACCTA
CAAAAAGGAAAGATATCCAAATACGCTGATTTTGCCGACACATTTAGTAA
TTCATCAGAGATTGACACAGACTCATCTTACAGTGATGATGAAAATCTAC
CTTTCATTAAACCTGATAATAAATACTCCTCTTACAAAAGTATCACATCA
ACCGGGAGTATCGACCGCCAGGGTAGTATCTCTTCATCTATATTCACTCT
AGTTTCCACCATGATTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTG
AACAGGGCGGATTTCTAATGGCGTCATTTTCACTGATCTTTGTTTTGATT
GCATCAACTTATGGAGGATTTTTGATCATCAACAGCAAGAAATATTGTAA
TGGTAAAGTGAGGAATATCGAAGATGTAGCTTACTATGCATTTGGAAAAC
TTGGAAAAGTGAACATGGTTTGGGGTTTCGTTGGTTCCGTCGGTTGTACA
TTCTTAATCTACATCATTCCGCCCGCTTTCTATCTGCGCGTTCGCCGACA
CCCGCTAAAGCCAGATGTGAAGAAAGTATCGGCTATTTGCCTCTTGATTG
TTGGAGTTTTATTATTGGTTGCTGGGCTATATCAATCCATCATGAATATT
ATATCTCCATTACCGGAACTTAGACCGGAAGATAGAGTATTGCCGGATTC
TTTTAATCGGACTAACCTTTTTGGTTTTAATAATAATGTTAATATTAATA
TAACTAATAATTTTATCTTTTGGCACCCGAACGAGCCGACACCCCAATGC
TTGTTGAAGATATCAAATCCAACTTTAACTGGACCAAATAAAATTGTCTG
GTTCATAGAATCCCTTATCCTGGTTGGAACAAGCTTCTTATTGGCTTATC
TTGTACCTCAGTTCCGTAGATTTACAGACCAAGATATTACACGTAATTAC
GCTTCTGACGATTACGTGGTGACGGTTGGACGTGCTGCACTTTGCGTTTT
GTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTGTCGCGCTACACTTA
ACAAGCGTCCTGTGTGGTATTTTACTATGCTGTTGTGTTACATACCGTTC
ACTGAAAAATCAAGTTGGTGGTCCGGTCGATAAACCGAGTAATCCGGTCA
AATGGCATCCGGATAGTTTACGTCAAACTCTAACCTGTATTTCAATCACC
GAATTAACTTTTTCATGTCATTTCAATATCCTACCAATGCACAGTGAACT
TCAGCACCAGACGAGACGTAACAAACGAATTATTTTATTCTCTGCAATGG
GCCTCACATACTTGATGAATTTCATTGTCAGTTTCTTTGGATATTTTCAG
ATGGAGCCCATCATTACATTAGCATCTAACGGTACAGCTGGTATTTGGAA
CAAGAAAGTCGTGTTATTGGCTTTTGTTTTTGCAGTTGTCTTCCCTATTT
CCTTATTCAGCAATCTGTCCGCTCTCAAACATACATCTATACTCAGATTG
GTGTGCAAATTTTGCTTATCATTGTACTTTATCTTTGCTCGGTTGCTTAC
TTCATACTCATTGTTGACCAGATGGCAAAACACCTACAAAAAGGAAAGAT
ATCCAAATACGCTGATTTTGCCGACACATTTAGTAATTCATCAGAGATTG
ACACAGACTCATCTTACAGTGATGATGAAAATCTACCTTTCATTAAACCT
GATAATAAATACTCCTCTTACAAAAGTATCACATCAACCGGGAGTATCGA
CCGCCAGGGTAGTATCTCTTCATCTATATTCACTCTAGTTTCCACCATGA
TTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTGAACAGGGCGGATTT
CTAATGGCGTCATTTTCACTGATCTTTGTTTTGATTGCATCAACTTATGG
AGGATTTTTGATCATCAACAGCAAGAAATATTGTAATGGTAAAGTGAGGA
ATATCGAAGATGTAGCTTACTATGCATTTGGAAAACTTGGAAAAGTGAAC
ATGGTTTGGGGTTTCGTTGGTTCCGTCGGTTGTACATTCTTAATCTACAT
CATTCCGCCCGCTTTCTATCTGCGCGTTCGCCGACACCCGCTAAAGCCAG
ATGTGAAGAAAGTATCGGCTATTTGCCTCTTGATTGTTGGAGTTTTATTA
TTGGTTGCTGGGCTATATCAATCCATCATGAATATTATATCTCCATTACC
GGAACTTAGACCGGAAGATAGAGTATTGCCGGATTCTTTTAATCGGACTA
ACCTTTTTGGTTTTAATAATAATGTTAATATTAATATAACTAATAATTTT
ATCTTTTGGCACCCGAACGAGCCGACACCCCAATGCTTGTTGAAGATATC
AAATCCAACTTTAACTGGACCAAATAAAATTGTCTGGTTCATAGAATCCC
TTATCCTGGTTGGAACAAGCTTCTTATTGGCTTATCTTGTACCTCAGTTC
CGTAGATTTACAGACCAAGATATTACACGTAATTACGCTTCTGACGATTA
CGTGGTGACGGTTGGACGTGCTGCACTTTGCGTTTTGTTGGTGTTAAGTT
ATCCGTTGTTGATCGTCCCTTGTCGCGCTACACTTAACAAGCGTCCTGTG
TGGTATTTTACTATGCTGTTGTGTTACATACCGTTCACTGAAAAATCAAG
TTGGTGGTCCGGTCGATAAACCGAGTAATCCGGTCAAATGGCATCCGGAT
AGTTTACGTCAAACTCTAACCTGTATTTCAATCACCGAATTAACTTTTTC
ATGTCATTTCAATATCCTACCAATGCACAGTGAACTTCAGCACCAGACGA
GACGTAACAAACGAATTATTTTATTCTCTGCAATGGGCCTCACATACTTG
ATGAATTTCATTGTCAGTTTCTTTGGATATTTTCAGATGGAGCCCATCAT
TACATTAGCATCTAACGGTACAGCTGGTATTTGGAACAAGAAAGTCGTGT
TATTGGCTTTTGTTTTTGCAGTTGTCTTCCCTATTTCCTTATTCAGCAAT
CTGTCCGCTCTCAAACATACATCTATACTCAGATTGGTGTGCAAATTTTG
CTTATCATTGTACTTTATCTTTGCTCGGTTGCTTACTTCATACTCATTGT
TGACCAGATGGCAAAACACCTACAAAAAGGAAAGATATCCAAATACGCTG
ATTTTGCCGACACATTTAGTAATTCATCAGAGATTGACACAGACTCATCT
TACAGTGATGATGAAAATCTACCTTTCATTAAACCTGATAATAAATACTC
CTCTTACAAAAGTATCACATCAACCGGGAGTATCGACCGCCAGGGTAGTA
TCTCTTCATCTATATTCACTCTAGTTTCCACCATGATTGGGGGTGGACTT
CTCTCCTTACCTTTCGCCTTTGAACAGGGCGGATTTCTAATGGCGTCATT
TTCACTGATCTTTGTTTTGATTGCATCAACTTATGGAGGATTTTTGATCA
TCAACAGCAAGAAATATTGTAATGGTAAAGTGAGGAATATCGAAGATGTA
GCTTACTATGCATTTGGAAAACTTGGAAAAGTGAACATGGTTTGGGGTTT
CGTTGGTTCCGTCGGTTGTACATTCTTAATCTACATCATTCCGCCCGCTT
TCTATCTGCGCGTTCGCCGACACCCGCTAAAGCCAGATGTGAAGAAAGTA
TCGGCTATTTGCCTCTTGATTGTTGGAGTTTTATTATTGGTTGCTGGGCT
ATATCAATCCATCATGAATATTATATCTCCATTACCGGAACTTAGACCGG
AAGATAGAGTATTGCCGGATTCTTTTAATCGGACTAACCTTTTTGGTTTT
AATAATAATGTTAATATTAATATAACTAATAATTTTATCTTTTGGCACCC
GAACGAGCCGACACCCCAATGCTTGTTGAAGATATCAAATCCAACTTTAA
CTGGACCAAATAAAATTGTCTGGTTCATAGAATCCCTTATCCTGGTTGGA
ACAAGCTTCTTATTGGCTTATCTTGTACCTCAGTTCCGTAGATTTACAGA
CCAAGATATTACACGTAATTACGCTTCTGACGATTACGTGGTGACGGTTG
GACGTGCTGCACTTTGCGTTTTGTTGGTGTTAAGTTATCCGTTGTTGATC
GTCCCTTGTCGCGCTACACTTAACAAGCGTCCTGTGTGGTATTTTACTAT
GCTGTTGTGTTACATACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTC
GATAAACCGAGTAATCCGGTCAAATGGCATCCGGATAGTTTACGTCAAAC
TCTAACCTGTATTTCAATCACCGAATTAACTTTTTCATGTCATTTCAATA
TCCTACCAATGCACAGTGAACTTCAGCACCAGACGAGACGTAACAAACGA
ATTATTTTATTCTCTGCAATGGGCCTCACATACTTGATGAATTTCATTGT
CAGTTTCTTTGGATATTTTCAGATGGAGCCCATCATTACATTAGCATCTA
ACGGTACAGCTGGTATTTGGAACAAGAAAGTCGTGTTATTGGCTTTTGTT
TTTGCAGTTGTCTTCCCTATTTCCTTATTCAGCAATCTGTCCGCTCTCAA
ACATACATCTATACTCAGATTGGTGTGCAAATTTTGCTTATCATTGTACT
TTATCTTTGCTCGGTTGCTTACTTCATACTCATTGTTGACCAGATGGCAA
AACACCTACAAAAAGGAAAGATATCCAAATACGCTGATTTTGCCGACACA
TTTAGTAATTCATCAGAGATTGACACAGACTCATCTTACAGTGATGATGA
AAATCTACCTTTCATTAAACCTGATAATAAATACTCCTCTTACAAAAGTA
TCACATCAACCGGGAGTATCGACCGCCAGGGTAGTATCTCTTCATCTATA
TTCACTCTAGTTTCCACCATGATTGGGGGTGGACTTCTCTCCTTACCTTT
CGCCTTTGAACAGGGCGGATTTCTAATGGCGTCATTTTCACTGATCTTTG
TTTTGATTGCATCAACTTATGGAGGATTTTTGATCATCAACAGCAAGAAA
TATTGTAATGGTAAAGTGAGGAATATCGAAGATGTAGCTTACTATGCATT
TGGAAAACTTGGAAAAGTGAACATGGTTTGGGGTTTCGTTGGTTCCGTCG
GTTGTACATTCTTAATCTACATCATTCCGCCCGCTTTCTATCTGCGCGTT
CGCCGACACCCGCTAAAGCCAGATGTGAAGAAAGTATCGGCTATTTGCCT
CTTGATTGTTGGAGTTTTATTATTGGTTGCTGGGCTATATCAATCCATCA
TGAATATTATATCTCCATTACCGGAACTTAGACCGGAAGATAGAGTATTG
CCGGATTCTTTTAATCGGACTAACCTTTTTGGTTTTAATAATAATGTTAA
TATTAATATAACTAATAATTTTATCTTTTGGCACCCGAACGAGCCGACAC
CCCAATGCTTGTTGAAGATATCAAATCCAACTTTAACTGGACCAAATAAA
ATTGTCTGGTTCATAGAATCCCTTATCCTGGTTGGAACAAGCTTCTTATT
GGCTTATCTTGTACCTCAGTTCCGTAGATTTACAGACCAAGATATTACAC
GTAATTACGCTTCTGACGATTACGTGGTGACGGTTGGACGTGCTGCACTT
TGCGTTTTGTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTGTCGCGC
TACACTTAACAAGCGTCCTGTGTGGTATTTTACTATGCTGTTGTGTTACA
TACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTCGATAAACCGAGTAA
TCCGGTCAAATGGCATCCGGATAGTTTACGTCAAACTCTAACCTGTATTT
CAATCACCGAATTAACTTTTTCATGTCATTTCAATATCCTACCAATGCAC
AGTGAACTTCAGCACCAGACGAGACGTAACAAACGAATTATTTTATTCTC
TGCAATGGGCCTCACATACTTGATGAATTTCATTGTCAGTTTCTTTGGAT
ATTTTCAGATGGAGCCCATCATTACATTAGCATCTAACGGTACAGCTGGT
ATTTGGAACAAGAAAGTCGTGTTATTGGCTTTTGTTTTTGCAGTTGTCTT
CCCTATTTCCTTATTCAGCAATCTGTCCGCTCTCAAACATACATCTATAC
TCAGATTGGTGTGCAAATTTTGCTTATCATTGTACTTTATCTTTGCTCGG
TTGCTTACTTCATACTCATTGTTGACCAGATGGCAAAACACCTACAAAAA
GGAAAGATATCCAAATACGCTGATTTTGCCGACACATTTAGTAATTCATC
AGAGATTGACACAGACTCATCTTACAGTGATGATGAAAATCTACCTTTCA
TTAAACCTGATAATAAATACTCCTCTTACAAAAGTATCACATCAACCGGG
AGTATCGACCGCCAGGGTAGTATCTCTTCATCTATATTCACTCTAGTTTC
CACCATGATTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTGAACAGG
GCGGATTTCTAATGGCGTCATTTTCACTGATCTTTGTTTTGATTGCATCA
ACTTATGGAGGATTTTTGATCATCAACAGCAAGAAATATTGTAATGGTAA
AGTGAGGAATATCGAAGATGTAGCTTACTATGCATTTGGAAAACTTGGAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008543XLOC_008543Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Amino acid transporterTCONS_00015276-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015276-exon-sc0000208-1575043694:114570..115116TCONS_00015276-exon-sc0000208-1575043694:114570..115116Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:114171..114245TCONS_00015276-exon-sc0000208-1575043694:114171..114245Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:113529..113674TCONS_00015276-exon-sc0000208-1575043694:113529..113674Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:112750..113044TCONS_00015276-exon-sc0000208-1575043694:112750..113044Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:112251..112394TCONS_00015276-exon-sc0000208-1575043694:112251..112394Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:111783..111929TCONS_00015276-exon-sc0000208-1575043694:111783..111929Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1575043694:110720..111026TCONS_00015276-exon-sc0000208-1575043694:110720..111026Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:114570..115116TCONS_00015276-exon-sc0000208-1510915933:114570..115116Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:114171..114245TCONS_00015276-exon-sc0000208-1510915933:114171..114245Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:113529..113674TCONS_00015276-exon-sc0000208-1510915933:113529..113674Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:112750..113044TCONS_00015276-exon-sc0000208-1510915933:112750..113044Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:112251..112394TCONS_00015276-exon-sc0000208-1510915933:112251..112394Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:111783..111929TCONS_00015276-exon-sc0000208-1510915933:111783..111929Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1510915933:110720..111026TCONS_00015276-exon-sc0000208-1510915933:110720..111026Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:114570..115116TCONS_00015276-exon-sc0000208-1491911889:114570..115116Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:114171..114245TCONS_00015276-exon-sc0000208-1491911889:114171..114245Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:113529..113674TCONS_00015276-exon-sc0000208-1491911889:113529..113674Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:112750..113044TCONS_00015276-exon-sc0000208-1491911889:112750..113044Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:112251..112394TCONS_00015276-exon-sc0000208-1491911889:112251..112394Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:111783..111929TCONS_00015276-exon-sc0000208-1491911889:111783..111929Clytia hemisphaericaexon
TCONS_00015276-exon-sc0000208-1491911889:110720..111026TCONS_00015276-exon-sc0000208-1491911889:110720..111026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:110720..115116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99735	3.02976	0.706758	0.276384	63.7997	48.1079	62.7876	59.4953	39.9496	103.547	101.758	46.8545	46.141	44.6656	23.1623	19.3288	13.7267	21.0755	12.7784	10.3488	8.10455	7.66897	19.7685	18.8235	14.9831	12.418	3.09381	3.85919	13.425	13.6122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Blast
[Close]
BLAST of TCONS_00015276 vs. Swiss-Prot (Human)
Match: S38A2 (Sodium-coupled neutral amino acid transporter 2 OS=Homo sapiens GN=SLC38A2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.899e-25
Identity = 125/461 (27.11%), Postives = 207/461 (44.90%), Query Frame = 2 
Query:  224 DDENLPFIKPDN-KYSSYKSITSTGSIDRQGSISSSIFTLVSTMIGGGLLSLPFAFEQGGFLMASFSLIFVLIASTYGGFLIINSKKYCNGKVRNIEDVAYYAFGKLGKIGVQILLIIVLYLCSVAYFILIVDQMEPIITLASNG---TAGIW--NKKXXXXXXXXXXXXPISLFSNLSALKHTSILSVLCGILLCCCVTYRSLKNQVGGPVDKP-----------SNPVKWHP---------DSLR--------QTLTCISITELTFSCHFNILPMHSELQHQTRR---NKRIILFSAMGLTYLMNFIVSFFGYFQFRRFTDQDITRNYAS---DDYVVTVGRAAXXXXXXXXXXXXXXPCRATLNKIFWHPNEPTPQCLLKISNPTLTGPNKIVWFIESLILVGT---SFLLAYLVPQVNMVWGFVGSVGCTFLIYIIPPAFYLR-VRRHPLKPDVKKV 1474
            D EN  F+   N     Y++    G+     S   S+F L + ++G G+L L +A    G  +    L FV I S Y   L++ +     G     E + Y AFG +GK+      I +  + +++ ++ IV    P++  A        G+W  N   ++L     V+ P+SLF NL  L +TS LS+LC +     V  +  K QV  PV+             + P    P         DS R        QT+  + I   +F CH  +LP++ EL+ ++RR   N   I F AM L YL+    + FGY  F    + ++   Y+S    D ++ + R A+ + + L+ P++I P R+++  +                   L       W+  SLI V     + LL   VP +  ++GF+G+   + LI+I+P AFY++ V++ P+K  V+K+
Sbjct:   45 DPENQNFLLESNLGKKKYETEFHPGTT----SFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTAN--EGGSLLYEQLGYKAFGLVGKLAASGS-ITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNYLVLLVSLVVILPLSLFRNLGYLGYTSGLSLLCMVFFLIVVICK--KFQVPCPVEAALIINETINTTLTQPTALVPALSHNVTENDSCRPHYFIFNSQTVYAVPILIFSFVCHPAVLPIYEELKDRSRRRMMNVSKISFFAMFLMYLL---AALFGYLTFYEHVESELLHTYSSILGTDILLLIVRLAVLMAVTLTVPVVIFPIRSSVTHL-------------------LCASKDFSWWRHSLITVSILAFTNLLVIFVPTIRDIFGFIGASAASMLIFILPSAFYIKLVKKEPMK-SVQKI 473
The following BLAST results are available for this feature:
BLAST of TCONS_00015276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S38A28.899e-2527.11Sodium-coupled neutral amino acid transporter 2 OS... [more]
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