XLOC_008543 (gene) - C. hemisphaerica

Overview
NameXLOC_008543
Unique NameXLOC_008543
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000208:110720..115116-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008543 ID=XLOC_008543|Name=XLOC_008543|organism=Clytia hemisphaerica|type=gene|length=4397bp|location=Sequence derived from alignment at sc0000208:110720..115116- (Clytia hemisphaerica)
AGATAGTACAGTTAAAAAAAAGTAAAGTACAAAAAAATACAAATTATAAA AATCGTATCTATCCTCTGAACACACTGATTGACGTTATTTATTGACATAC ACGCGACGCAAGAACACATTCAAGATGGCAAAACACCTACAAAAAGGAAA GATATCCAAATACGCTGATTTTGCCGACACATTTAGTAATTCATCAGAGA TTGACACAGACTCATCTTACAGTGATGATGAAAATCTACCTTTCATTAAA CCTGATAATAAATACTCCTCTTACAAAAGTATCACATCAACCGGGAGTAT CGACCGCCAGGGTAGTATCTCTTCATCTATATTCACTCTAGTTTCCACCA TGATTGGGGGTGGACTTCTCTCCTTACCTTTCGCCTTTGAACAGGGCGGA TTTCTAATGGCGTCATTTTCACTGATCTTTGTTTTGATTGCATCAACTTA TGGAGGATTTTTGATCATCAACAGCAAGAAATATTGTAATGGTAAAGTGA GGAATATCGAAGATGTAGCTTACTATGCATTTGGAAAACTTGGAAAAGTA AGTTTGATTGCCTCATTGTCTTCTGTTTTATCAAAATGATTATTCTATTC TTCAAAATTGATGTGAAAAAGTTTTTCTTAAAGTTTCATCTGTACTAAAA AACTAGCCGTACTTGAAACTATTTCAAACTCTTTTCTGTTCATTTCATGC CTGGGTTGATCAACAGAATCAGCATCCTTTAAACCGTCTAAAGTGTCTCC CAGGCAGTCAGCNAGCATCCTTTAAACTTAAAAACCGTGTAAAGTGTCCC CGGTCAGCTAGCTACCTTATATTGTAAGGTTATTTTTTAGGATCTTATTT GAGCTTTGATTCTAATTTTAGATTGGTGTGCAAATTTTGCTTATCATTGT ACTTTATCTTTGCTCGGTTGCTTACTTCATACTCATTGTTGACCAGGTAA ATAATTGTTTTTCAAATTCAAATTGAACTAACTTTTGATCTTGCTGCTTC CGTACTAATATGTTTTTTCATCTGTTGTAGTTAGGACAAACCTATGAAAT TTGATACACTATTTATTTTGCAGTATATAGTTCTTAGACACTAAAGATAA TTTTCCGCAAATGGAGAATTGATCGCGGGGTCAGACTTAAGTGTTTCATT TTTTAAATGTTTTTAATAAACAAGAAACTATTCCTCCAATCTGTCAGAAT TCATGATATTCATGACGTAATGTTTTCTACGGAAGTACCCCGGTTTTAGC CAGTAGTGGCAAATTTAAACTAGAACAAAGTTGTATAAAATTTGCCACTA CTGGCAAAAAACCGGGGTCTTTCCGTAGAAAACATTACGTCATGAATATC ATGAATACATAATTATCCTTACATCTTTCAAAATTCCCATGTTCTTATTC ATCATGGTATTCTCACCTCAAAAAAAACTTATCCCATTTTAGATGGAGCC CATCATTACATTAGCATCTAACGGTACAGCTGGTATTTGGAACAAGAAAG TCGTGTTATTGGCTTTTGTTTTTGCAGTTGTCTTCCCTATTTCCTTATTC AGCAATCTGTCCGCTCTCAAACATACATCTATACTCAGGTAAGACCAATA AAAGATAAATTATATCATGGACATAACATGGAATTTTCAAGATTCGAGAT TCATGAGATAATCGCAGGCTTCACATTTCGATACAAATTGCTCCCAAAAA TCATGAATTTTGAGCAGCTCTGATCGGATGTTTTGTCTTTATTTCGAGAC CTGCGATCACAATGTAAAATATTTGATTTGCCACAATTTTTGCGTGCAGA AATTTTAGCTCGCAACACACTTTAAATCAAATAAGGCAGCATAGCCTGGA TGTTATGGAGTCGTGAGAATCCGTGTATCACAGTAATATAATAGGTGTTA TACGAGAGTACCATAAGTTATTATTACGGGACAATTTTAATTTATCGACA TGGAAAACTGTAAAGGGCTAAGTAATCAAAAGTGAACAAGCCACATACAA AATAAAGTGCAGCGAGATCAATTTTTATTTTCAAAAATGAAATCTAACCT TTTGATTGATCTCTCATTTTAGCGTCCTGTGTGGTATTTTACTATGCTGT TGTGTTACATACCGTTCACTGAAAAATCAAGTTGGTGGTCCGGTCGATAA ACCGAGTAATCCGGTCAAATGGCATCCGGATAGTTTACGTCAAACTCTAA CCTGTATTTCAATCACCGAATTAACTTTTTCATGTCATTTCAATATCCTA CCAATGCACAGTGAACTTCAGCACCAGACGAGACGTAACAAACGAATTAT TTTATTCTCTGCAATGGGCCTCACATACTTGATGAATTTCATTGTCAGTT TCTTTGGATATTTTCAGGTGAGTTTTTTTTTTGAAAATTGAACGATGAAA TTAACTGGATCGGTATTTAATTCGGGTTAAGGTTTTTTTTGGAAAGGGGG TAAATAGGGTTTATATATGTAATTATGTAATTAAATGTTTTTCGTAGGTT TTGAAAAAAGTGATTTATAAGTACGTATAACTTATTAAAAATCTACCATT ATGGAATAAAACGCTCGAATCTGAAGAGGCAACTGCTTTTATATCGTCTA GTTTATCATCCGGGTAATCGTAAAAGACTTTAAATTACAAATCCTTTCTT TAAGAAATGATGCCTGAAAAACCTCAATTAATATTGATATTTACATTTTT CCCGATCTTTCTTTCTTTCTAGTTCCGTAGATTTACAGACCAAGATATTA CACGTAATTACGCTTCTGACGATTACGTGGTGACGGTTGGACGTGCTGCA CTTTGCGTTTTGTTGGTGTTAAGTTATCCGTTGTTGATCGTCCCTTGTCG CGCTACACTTAACAAGGTGAATTGATCGTTGTGTTTGATTGGGTCGAGTT GATTAAAATTCTAAAAGCAATACAAAATAGCTAACACTTTTACTAGCTAC CGCTGGTCTTAAACTTCTTCGAATCTCGAAATTTTGTATTCTCTGTTTGC TGTCGATGGGAAAAGTCAGTCAAATTTTTTTTAAGACCTTCATTCTTTTT TCCCAAAAATAAACCCTAAAATGGGAAGCTTTTTACCAGCAATGAAATTT GAAAAAAAAATAATAAAACTAATATTGTGTTAATCCAACCCTTTTGAGAA TTTCCTCTTTCTTTCATAAAAAATTTTTTGGTTATAGATCTTTTGGCACC CGAACGAGCCGACACCCCAATGCTTGTTGAAGATATCAAATCCAACTTTA ACTGGACCAAATAAAATTGTCTGGTTCATAGAATCCCTTATCCTGGTTGG AACAAGCTTCTTATTGGCTTATCTTGTACCTCAGGTAGTTTTTTTAGAGT CGACATTTTACGTGGATAGCCCAGTAATCTAGGACTTTTAGACAGTTTTT CGATTGTTTTCACGGGGTCCCCGGCCAGCCGGCTCGGCTATCTATGAACT AAATGAAACATTGGAAGGAGCGGGAATTAATGGTTTAGGGACTGGAACTG GGGCGGAAAAATTAAAGCGATTCTGTGACATGCATTAAGTTACCCGATAA TCCCTGGTTTTAGACGCTGACGCCTTTGACCACTTGGCCATCGCTCCCTC CCTTTTTGAGATGGTTTTCTTGATTTACCAGTTGCAATTTGTGAATACTT TAAAGGAAAGAACAAGTCTCCTATTTTTCGGTATTTCTGATGAAGATATA TACTGTCAATATCTTTGTCAATATTGTAAATATGTACGGTTCAAATACAA CGCATCTACGATCTAAAAGCAACCTTGTTGCTATAATACGATAATGGTCA GCAATTATAGCTCCACATCATTCCAAAATGAAACGGCTCCGAAACACATA CACGGGTTGCAAAATTATATCAGTACAGTCAAAACATGTGATTACTCGAA AAAGTTCACGTGATTTATTCCCATGTTACATACTTATCGTTAAACTTACA GATGAACCAATCAGAAATAAATGTCATGTAGCAAGCACATAAAAATTTCG AGTAAAAGTGTGATTTGTTTTCAGATTTTAATTTAGCAACCTGTGTATTG GCGATGTTTATCAAAAATTTATTTTTTTATTTCATCTTAGGTGAACATGG TTTGGGGTTTCGTTGGTTCCGTCGGTTGTACATTCTTAATCTACATCATT CCGCCCGCTTTCTATCTGCGCGTTCGCCGACACCCGCTAAAGCCAGATGT GAAGAAAGTATCGGCTATTTGCCTCTTGATTGTTGGAGTTTTATTATTGG TTGCTGGGCTATATCAATCCATCATGAATATTATATCTCCATTACCGGAA CTTAGACCGGAAGATAGAGTATTGCCGGATTCTTTTAATCGGACTAACCT TTTTGGTTTTAATAATAATGTTAATATTAATATAACTAATAATTTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015276TCONS_00015276Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Amino acid transporterTCONS_00015276-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:110720..115116 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SLC38A1sodium-coupled neutral amino acid transporter 1 isoform 2 Homo Sapiens
SLC38A5PREDICTED: sodium-coupled neutral amino acid transporter 5 isoform X2 Homo Sapiens
SLC38A2sodium-coupled neutral amino acid transporter 2 Homo Sapiens
SLC38A3sodium-coupled neutral amino acid transporter 3 Homo Sapiens
SLC38A4sodium-coupled neutral amino acid transporter 4 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3 3.03 0.71 0.28 63.8 48.11 62.79 59.5 39.95 103.55 101.76 46.85 46.14 44.67 23.16 19.33 13.73 21.08 12.78 10.35 8.1 7.67 19.77 18.82 14.98 12.42 3.09 3.86 13.43 13.61