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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015254 ID=TCONS_00015254|Name=TCONS_00015254|organism=Clytia hemisphaerica|type=transcript|length=1421bpRun BLAST on NCBI transcript from alignment at sc0000208:58909..101367+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015254 ID=TCONS_00015254|Name=TCONS_00015254|organism=Clytia hemisphaerica|type=transcript|length=42459bp|location=Sequence derived from alignment at sc0000208:58909..101367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015254 vs. Swiss-Prot (Human)
Match: ITB3 (Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 3.693e-19 Identity = 92/291 (31.62%), Postives = 138/291 (47.42%), Query Frame = 2
Query: 356 KKICNGDGKCHCGECECSLKQPPKVISGRFCQCKNYGCPQYLGSECGSAETEKRGECECGKCRCVPPYKGINCGEIECVTQQKLTCRKGGIECSGHGXXXXXXXXXXXXAGYAGENCEKCITQDCKCATIDPSCLKC-----------HVTNSTCAEELNCDQHVFILSDNSTFPISCNVKYNDDLCTATYNFTREYLHNTSMVWEYVTGCTVAVSQGDDTGTXXXXXXXXXXXXXXXXXXXXXWKLLVTLHDKKEYAKFERAQNDSSWEKDGNPIYREPNQQFVNPAYAG 1195
+ +C+ G+C CG+C C K I+G++C+C ++ C +Y G C G+C CG C C + G C C T+ G+ CSG GKC C Y G+ CEKC T C T C++C + N C +E+ + V L D ++C K N+D C + + Y ++ YV +G D L ++L ++ ILL+GL LL+WKLL+T+HD+KE+AKFE + + W+ NP+Y+E F N Y G
Sbjct: 518 QPVCSQRGECLCGQCVCHSSDFGK-ITGKYCECDDFSCVRYKGEMCSG-----HGQCSCGDCLCDSDWTGYYCN---CTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSY-GDTCEKCPTCPDAC-TFKKECVECKKFDRGALHDENTCNRYCRDEI---ESVKELKDTGKDAVNCTYK-NEDDCVVRFQY---YEDSSGKSILYVVE-EPECPKGPD--ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYRG 787 The following BLAST results are available for this feature:
BLAST of TCONS_00015254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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