TCONS_00015237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015237
Unique NameTCONS_00015237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015237 ID=TCONS_00015237|Name=TCONS_00015237|organism=Clytia hemisphaerica|type=transcript|length=526bp
GCCCTTTGTGTTTTTTGTGTTGTAGAAGAAGTATGTCTATAAAGTCATAT
AAATTCAAGCAATATTTATTAAACAATACAAACTTAACCGactaaataaa
caaaacaacacAACACAGCAAGAAgcaaaacattattttttacaaaacaa
aagtaacaaaagagaaaaacaaacacaaaaaaacaaacaaagtttTACCT
CTCACTAATATTTTCTGTACATCAACGTTGTTTTTGTTATCGACCACACT
TGTTATTGAGAACTTCATTCACTCTTTTCTTTTAGTTTCTGTTTAGAAAA
ATATCTTGGTGAGATCGTGGTGTTTTACTCTTTCTAAAGAGAGACCATTT
CCTACACACAAATTATGCAAATGAGTTGAACGTTTTCGTTAATTATGTTA
AATTCTTTCAGCATTATCAGAAGCTCGTGAAAGCGTCAATCTAAACTTAT
CAGAAGCagataaaatcaatcaatcactcCCACCCCGGGCGGAACAAGCT
TTCCCGCCAAATCAGCCATCTTGCCC
Run BLAST on NCBI

transcript from alignment at sc0000205:1364..1889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015237 ID=TCONS_00015237|Name=TCONS_00015237|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000205:1364..1889 (Clytia hemisphaerica)
GGGCAAGATGGCTGATTTGGCGGGAAAGCTTGTTCCGCCCGGGGTGGgag
tgattgattgattttatctGCTTCTGATAAGTTTAGATTGACGCTTTCAC
GAGCTTCTGATAATGCTGAAAGAATTTAACATAATTAACGAAAACGTTCA
ACTCATTTGCATAATTTGTGTGTAGGAAATGGTCTCTCTTTAGAAAGAGT
AAAACACCACGATCTCACCAAGATATTTTTCTAAACAGAAACTAAAAGAA
AAGAGTGAATGAAGTTCTCAATAACAAGTGTGGTCGATAACAAAAACAAC
GTTGATGTACAGAAAATATTAGTGAGAGGTAaaactttgtttgttttttt
gtgtttgtttttctcttttgttacttttgttttgtaaaaaataatgtttt
gcTTCTTGCTGTGTTgtgttgttttgtttatttagtCGGTTAAGTTTGTA
TTGTTTAATAAATATTGCTTGAATTTATATGACTTTATAGACATACTTCT
TCTACAACACAAAAAACACAAAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008518XLOC_008518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015237-exon-sc0000205-1491911889:1364..1889TCONS_00015237-exon-sc0000205-1491911889:1364..1889Clytia hemisphaericaexon
TCONS_00015237-exon-sc0000205-1510915933:1364..1889TCONS_00015237-exon-sc0000205-1510915933:1364..1889Clytia hemisphaericaexon
TCONS_00015237-exon-sc0000205-1575043694:1364..1889TCONS_00015237-exon-sc0000205-1575043694:1364..1889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:1364..1889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.671503	0.654821	0.253437	0.991793	1.81112	1.43117	1.43887	1.48176	0.660173	1.8691	0.453548	0.521753	0.521028	1.00489	0.127101	0.204598	0	0.344454	0.11897	0.124494	0.216416	0.63336	0.384966	0.69998	1.44193	1.60861	1.22769	0.655109	0.745316	0.506239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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