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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015235 ID=TCONS_00015235|Name=TCONS_00015235|organism=Clytia hemisphaerica|type=transcript|length=3647bpRun BLAST on NCBI protein sequence of TCONS_00015235-protein >TCONS_00015235-protein ID=TCONS_00015235-protein|Name=TCONS_00015235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1185bp MKSSRLVLISMLFFFHESHQSCQNVHSLQQSNITASMDKAIVFDKNYSNPRun BLAST on NCBI transcript from alignment at sc0000205:398745..421683- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015235 ID=TCONS_00015235|Name=TCONS_00015235|organism=Clytia hemisphaerica|type=transcript|length=22939bp|location=Sequence derived from alignment at sc0000205:398745..421683- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000205:398745..421683- >TCONS_00015235 ID=TCONS_00015235|Name=TCONS_00015235|organism=Clytia hemisphaerica|type=CDS|length=85320bp|location=Sequence derived from alignment at sc0000205:398745..421683- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015235 vs. Swiss-Prot (Human)
Match: PTPRK (Receptor-type tyrosine-protein phosphatase kappa OS=Homo sapiens GN=PTPRK PE=1 SV=2) HSP 1 Score: 306.605 bits (784), Expect = 8.200e-86 Identity = 159/418 (38.04%), Postives = 236/418 (56.46%), Query Frame = 3
Query: 2472 HEPVPVDKFYQYMESLKEDEYGALMDEFKSVTSGKCSPWLCAERPENQNKNRYTNINAYDHSRVVLKTESRRKGQDYINASFVQGFNYEESSGPPYRYISAQGPLDYTKNDFWLMLWQEEATIIVMLTNLVENERLKCSQYWPNDSQHYGDLTVTLDKIDKTADYITRSFKIEKASTKETRNILQFHFVSWPDHGVPDYPTAILSLRRRVRHYYDPTK-PMIVHCSAGVGRSGCFILLDAMLERIDKEKSVDVFNYLRYMRTRRVNMVQTFEQYRFAHTAILESITFGNTEIFVGELDK------KIRQLGKNNGMADEFNLLMQNTTPVPATGNLYQVLLR--------------------------EGKFIDAYHVDGYKHRDAFIITKATTENNVADFWKMVLEKQCHTIVMLNK 3626
H + V Q++ +K + +E++S G+ + W A++ +N+ KNRY NI AYDHSRV+L+ DYINA+++ G+ P YI+ QGP+ T DFW M+WQE++ IVM+TNLVE R+KC +YWP+D++ YGD VT +++ A+Y+ R+F +E+ E R + QFHF WPDHGVP + T +LS RRV+ P+ P++VHCSAG GR+GC+I++D ML+ ++E VD++N ++ +R+RR+NMVQT EQY F H AILE+ G T I V E +I ++ + DEF L T + A L R +I+A +D Y+ AFI+T+ N V DFW++V + C +IVMLN+
Sbjct: 864 HPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQR------PSHYIATQGPVHETVYDFWRMIWQEQSACIVMVTNLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPPSAGPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQYIFIHDAILEACLCGETAIPVCEFKAAYFDMIRIDSQTNSSHLKDEFQTLNSVTPRLQAEDCSIACLPRNHDKNRFMDMLPPDRCLPFLITIDGESSNYINAALMDSYRQPAAFIVTQYPLPNTVKDFWRLVYDYGCTSIVMLNE 1275 HSP 2 Score: 114.39 bits (285), Expect = 2.082e-25 Identity = 82/273 (30.04%), Postives = 130/273 (47.62%), Query Frame = 3
Query: 2541 LMDEFKSVTSGKCSPWLCAER------PENQNKNRYTNINAYDHSRVVLKTESRRKGQDYINASFVQGFNYEESSGPPYRYISAQGPLDYTKNDFWLMLWQEEATIIVMLTNLVENERLKCSQYWPNDSQ-HYGDLTVTLDKIDKTADYITRSFKIEKASTKETRNIL--QFHFVSWPDH-GVPDYPTAILSLRRRVRHYYDPTKP----MIVHCSAGVGRSGCFILLDAMLERIDKEKSVDVFNYLRYMRTRRVNMVQTFEQYRFAHTAILE 3317
L DEF+++ S +P L AE P N +KNR+ ++ D L T + +YINA+ + + P +I Q PL T DFW +++ T IVML + ++ C QYWP + YG + V D I R F+I + + ++ QF ++ W H VP + L L +V + + + I+HC G GRSG F + ++E + ++ VDVF+ ++ +R + NMV+ EQYRF + LE
Sbjct: 1173 LKDEFQTLNS--VTPRLQAEDCSIACLPRNHDKNRFMDMLPPDRCLPFLITIDG-ESSNYINAALMDSYRQ------PAAFIVTQYPLPNTVKDFWRLVYDYGCTSIVMLNEVDLSQ--GCPQYWPEEGMLRYGPIQVECMSCSMDCDVINRIFRICNLTRPQEGYLMVQQFQYLGWASHREVPGSKRSFLKLILQVEKWQEECEEGEGRTIIHCLNGGGRSGMFCAIGIVVEMVKRQNVVDVFHAVKTLRNSKPNMVEAPEQYRFCYDVALE 1434 The following BLAST results are available for this feature:
BLAST of TCONS_00015235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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