TCONS_00015208 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015208
Unique Name	TCONS_00015208
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1620

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000205:312928..320640+

transcript sequence

>TCONS_00015208 ID=TCONS_00015208|Name=TCONS_00015208|organism=Clytia hemisphaerica|type=transcript|length=1620bp
GTTTCAGGTACTTATATGAAAAATGTATTAATGTaacgatttcaaaagtt
taataGCCTTCTGTGATGTCAAGTCAAGCTGGTAAAGAACGAGCATTTGC
TCAACGCCTGCATagAAACACCACATCACAAACACCTTCAGCTGCCAGTA
TCCCTGGCGACAGGAGATcacaaatttcaagaatatctTTTTCTGAAATA
CAAAATTATCAAACTGGAATAACGCCAACCTATCAAGATGTTGTGGACCC
TTTAGATTTTGAAGAATTCATACTACAACATCAGCCACTGGCAGATGATA
GTTCCACCATTGCAGTGTTGTCAGAATTCCCTGATGATGATATCGAAGTT
ACCAGTATTCAACGCAAGTCAAGAACAGTGGGACTGACCGTACCTGATGT
CTTACATAGTTCCAATGATCCACTGGTTAAAGATTGCGTCAAATCATACA
CTGATGATTGGTCCATTGTcaaccgaaaGTACCAGGTCAAAGGCTTTGGA
GGAAAACAAAAACAGCGTAGTCGAATGGATAGTTCCACACAGCGTCTTCA
CAAGCATGAGTATGAGGTGGATGAACGAAAGGAAAACGATGGTAAAAACA
ATAGGCAATTATTGCAAGCCACACCACGTGGGAGTTGGGCTTCTAGTATT
TTCGACCTTCAATCATGTCAGCCTGATCCATTACTTCAAGGACTTTTGGA
TAACATTCCTATTGAAGATGTTGATAAACAGAATAAAGTTTTCCGAGAGA
AGAATCGAGTCAGTTCCATCTTCTCTATATTCCCACAAAATGAGGAAGAA
CAATTTGTAACTCGAGCTCCGGCTGTTATTCCTCAAGAACATGTTGGACA
ACGTATTCTCGTTCGGTGCACGGAATTGAAGTTAGAGTTGGATATCGAGC
CAATTTTCGCCACAATGGCATTGTATGACTGTAAACAAAAGCGAAAGATT
TCGGAGAATTTCCATTTCGACATGAACCAGGACTGGCACAAAAAGATGTT
ATCACCTTACAACAAGGGCAAGATAGACATCTCCACACTGGCAAAGTCTT
GTATCTTTTCGGTGACCTACCCTTCCAGTGAAGTGTGTTTAGTTGTGAAA
CTGGAGAAGGTTCTCCAACAAGGTGATATCACTGAATGTGCTGAGCCGTA
CATGAAAGATACTGAAAGCCAAAAGAGTCGTGAAAAGGCCAGAGCACAAG
CTGAACAATTCTGTGGAAGAAACGGTGAATACAGAATGCCATTTGCCTGG
ACTGCCATTCACCTTGTTGATGTCATCACTGGTGCTTCTGCTGCAGAACC
GCCAAGCTCCAACAATGAGAAAGACCAACCTTCACCAAAAGATCCTGTTC
GAAGAGGAGTAAGTCCACTTACTTTATCAGcggccgtagcatgaaggtag
agcatccagctacggtgcgcaaggttgtgggttcaatccccagccgggtc
ataccaaagattcccaaaatggtacttgatgcctctctgctggATGCTCA
TCaattaaagagacggatcaagggtaagtggagaaatccagggaaaggag
tggcgccttcccctaccttcgggtagacagctatacgaaaagggagcctt
cgggtcgccctcgactgcgg

Run BLAST on NCBI

transcript from alignment at sc0000205:312928..320640+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015208 ID=TCONS_00015208|Name=TCONS_00015208|organism=Clytia hemisphaerica|type=transcript|length=7713bp|location=Sequence derived from alignment at sc0000205:312928..320640+ (Clytia hemisphaerica)
GTTTCAGGTACTTATATGAAAAATGTATTAATGTaacgatttcaaaagtt
taataGCCTTCTGTGATGTCAAGTCAAGCTGGTAAAGAACGAGCATTTGC
TCAACGCCTGCATaggtaaaatattttcttttcttttgatcacAAATCAT
AATCAATACAACAGGCCATTTTTCATACCCTTTTAGCAACTGGTTATCCG
GCGCTGCCCCTACTGAAATTATTAATATAAACCAGTATAAACAGCCTTTA
CAGCGGAAAACACTagaaaaagtgcactttttGACTAACAATGAATGCTA
CCCCAGGCTACCCTGCTTTTCGAAAGTATGGCCTGTTTTCTCAattaagc
aaataaaattctttGAGCAGCCTTCATTTTTTAATGTCAACTGCCAAAAT
TTGATTTAGtctttgatttaattttttatttgtatGGATGGTTTTTTCTG
cagacctttttctttattatgTCTTGATAACCATCACTAGAATAAAACAA
CTAACAATTACTTCcagataatattgtattttttttctttacccAAACTT
CCTTTTATTTTATAGAAACACCACATCACAAACACCTTCAGCTGCCAGTA
TCCCTGGCGACAGGAGATcacaaatttcaagaatatctTTTTCTGAAATA
CAAAATTATCAAACTGGAATAACGGTAAATCATGGACATTTGTATATCCG
TTTCCTTTAATAAAACTGGAAAATAAGATTAATTCTGGAAATAATATATT
AGTTATGCTGACTTTTCACACAAGTTCTAGCTAGGTTCTAGCTTAgctat
tctttatttttctgttaCCATCCTGTACTATCACTAATTTAGGTAGCGAT
AAAtcttttaagaattttaagaaataaaatccAATTTCATGATTAAGGAT
TAATTGCATTCCACAGAAAGGCTTGGTATCAGATAAATTTACACAAAGTA
TATCTCTCTATTTCTTCCAACAGCCAACCTATCAAGATGTTGTGGACCCT
TTAGATTTTGAAGAATTCATACTACAACATCAGCCACTGGCAGATGATAG
TTCCACCATTGCAGTGTTGTCAGAATTCCCTGATGATGATATCGAAGTTA
CCAGTATTCAACGCAAGTCAAGAACAGTGGGACTGACCGTACCTGATGTC
TTACAGTAAGTGTAATACATGAGCCGTTTGTTTTGTgcttttttgtgttt
tatttaCGGCTGACTTTTTATTTGAACTATGAAATATAAGGGGTCCCAAT
AACCTAGCCCTGTTTTATTAACCCAAAATAATATACATACAATTTGTTTA
TTCAACAGTGAGTGTGGACTTCTTATTGTTACAACATACCCTTTGTAGCT
AAGTGTTAGTCTAAAGTTCATTCCCTTTAAGCGGGCATTCTGTTTTGCTT
CCATATAGAAACCACATCAGTCTTGATACGATAGTCGACTAATAACTTTA
TGGATGGTTTCTATATCGTAGCAAAAAGAGAGTCACAAAACAAGCATGAG
AAGTAAAGTTTTAAAGTGAAGGTCTATATTCAGGTAATCCCGGGGGACCT
TGGGTATCAAACTGTAAGGTCATATGTTTTTCTACAAGCTCAAtattctt
ttatctttttttttatccaattattttccaaaataataCGTTAAAGTCAC
GACTCAAATTTAATGCACACACATGTTTTGCaaacaaaagagaaaataag
TTAAATGTTTAGTAGGAAAGTGTTGTCAATACCAAAGAAATAGCTGACTG
ATTTGTGACAAGAATTATGTTATGTCCTGTCCTGTGAATTACTTGCCTGG
TaactgatttttttgttttattgtagTAGTTCCAATGATCCACTGGTTAA
AGATTGCGTCAAATCATACACTGATGATTGGTCCATTGTcaaccgaaagt
aaatgtttaTAATCTCTGAATCTTGAATAGCTTTAGACAATTACACATCA
AAATGAATATTGCACATACTACAAAATTGTTACGCCAGatacttattttt
ttttgaattttctcttgtttttcctgcatttttgatttttatagtTTTTG
CCAAGGTTCTCGAAAcagtgttgcaacttttccgTCTGTAGACTGATATC
CGTCCAGTTGAGATACAAATATATCATTTCCGTCTTGCCAGTAAGAGGGT
TTTTGGCTCAAATGACCATCTAATCCTAGGGTTTCCGTCCATATTCACAA
AACCTAGTGTAAACACAGccaaaaagaaagtttttcaagttttttcccCA
TCAAAAATTGGTTACATAGGGAGATTGTGTGCATATTTTATATTTTGgcg
tattttgaaaaaatgagagCTTTGATTAAGttcataattttcaatttaag
GTACCAGGTCAAAGGCTTTGGAGGAAAACAAAAACAGCGTAGTCGAATGG
ATAGTTCCACACAGCGTCTTCACAAGCATGAGTATGAGGTGGATGAACGA
AAGGAAAACGATGGTAAAAACAATAGGCAATTATTGCAAGCCACACCACG
TGGGAGTTGGGCTTCTAGgtatttattcttttttttcttacaaatttcat
caagataggaaatatttaactttgTTCTGATCTTTAATTTAAGTTTTGGA
ATTTGTGTCcgcaaattttatttcattatatAAAATTGTTACCATGTATG
AAATGTTATCTTGCTAGCCAATAGGTTTAGGCCGATAAGGTCTTAGTTGG
TATTTTTAGTTGTTAATgtttaacggaagcacccgaaaTAGCCCAGGCGT
TTGTAACTAGTTTtgaattcaaacaataaaactagtaGCAAACACACGGT
CTTTTTTGAGTACTTCAATATAAAATATTGCGTCATGAATATCACaaatt
gaagtttttaaaaccttaacaacaaagaattttacagatttttttagTAA
GTTGACTTACAGTGTTGATGGTTTGATGGTatttaaattgttttgtttat
attgttttgttttttctttatagtAACCCATAGTTATCAAGAGAAAGTTG
ATTTATAAAAGGGATAAAGTCAAAGTTGTGAGCAGTACCTTTAGCTCCCA
ATGATTTGCAGCTTCTTTATTTCCTAGCTTcgtttaaaaagttaaaagaa
atTCTACTTTGCTCTGCtgaatgaatttgaaaaaatgatacCAAAAAACT
AAATCAAATTATCTTAGATTTAACATTCTGTACAAAGCTTTATTTCACTA
ACACTACTCACAATTTGAACTATTTATCCCTTTTTATCGATTTTAACAGA
AGATATGGACAAGATAAAGAAACAAACTGAGATTAAAAAGAAAGAAGCAA
GAAGAAAAAGTGTAATTAAAGCGCAGTAAGTAAAGTTAGAAGAATGAAGT
AAAGTTTTAAGTAAGAAGTTAATAagaccgtaagttggtctaatgtcgac
atccctcttctaattatTTCTTCTAACCTTTTTTAGAGATAGAAATAATA
TGAAGGTCGggatcactgatagacaaaagattcTTCCTCCCTGATCGCTA
AACAAAAAAGAttccatcagcgattccgaccttcatattattcctatctc
taaagaagggtgtcgaaattagaagagggatgtcgacattagaccaactt
acggtagttaTTATAATAATAGTTGAAGGTTTCTCCCAATGTCCTAGTGT
CTTATTGTTATTTGTAATGAGATTCGAAATAGAAGGCATTGTTGAAGAAT
ATCTTTGACGAATAGAGCAATATCAAAGGCTGCAAAGTACTGTATAGAAC
AGCAATGCTCAGAAACTTCTACATTGTTGGTACAGTTAACTCACACGAAA
TCGAATGGAAAGTCTAATTTGCTTAAGAATTACAGAAATATCCGAATTAT
AGATAGCATTTATACAAGGGTCTTCCCTTGACAGGGACTGAGAATTAATG
AGAATTCATCTTAATAACATTATTACTTCACTATCTTTTCAGTATTTTCG
ACCTTCAATCATGTCAGCCTGATCCATTACTTCAAGGACTTTTGGATAAC
ATTCCTATTGAAGATGTTGATAAACAGAATAAAGTTTTCCGAGAGAAGAA
TCGAGTCAGTTCCATCTTCTCTATATTCCCACAAAATGAGGTTCGTTATA
AGGCTTGTTTACGTGTTTACCAGGGGGAGTTGCTACTCATTGcttttatg
tttatgttttttttctttaaaattgatgTAAAGTAGTACAAATTctactt
agctcgaggctaatcaatatcaactttTAATTACAATTCTATCCAAAAGG
TTGATAGTCAAAGTcaagtttatttacaaattaatttaaattcaatcgAT
AAAACCAACGCCATGGATAAAGGTGCGACAGTTTCCGCAAGGACAAGTAG
TGGGTCTCCAttgcttgatttcttttttacacCGGGCTACAGCTTCGCCA
ACTTGGCAAAAACTTGTTTCAAATTCCCAAAGGATAATGAGAgataatga
ttaaaaaaatgaaaaaatgataaatttacGACACTGGACTATTGTTCAAG
ATAATTCTATCACTGGTCTACGTCCCCACCGATTCCCCACCGATCTTTAA
CTAATTGACTGGATCTGGGTTCCCATATAAAAGGAAGTGTGTCAGGTTTT
AAAAGCCAACTAGTTCACCATGTCCATCTGATTATAAAAAGTGggattca
aatgttttgaaatttgaacgtTCCAAAGTCTAGTGtaaaacagaaaacaa
aatggTTGAGTCAGTTGACCATAAAACTGGACCCACTTTCAAGGGAAAAT
CTGTTGGCAGTTAGCCTGTGTAGTGTGTAAAGGAATATAATATCTAATAC
TCCCATTTAAGTCTTACTACCATTTGTCATCCACCTGTGCCTTTCTCTAA
GtcctctttttttttcctttctcaGGAAGAACAATTTGTAACTCGAGCTC
CGGCTGTTATTCCTCAAGAACATGTTGGACAACGTATTCTCGTTCGGTGC
ACGGAATTGAAGTTAGttctattttttgtatttttaacaggagatttatt
ttctttttcttttggcaTTTTAAGATAGAGGTACTTCGTTTAAGATATAT
TTTTTCCCAGAGTAAGTATTTAGAGTGCGTTGCAAAAAGTGGTTATTGAA
AGAGTTTTATTTGATAAATGATAAATAATGAAAGCTCGATTCTTGTTCCT
TAAACTTGGTTATTTCTGTGaaatttacaaaatgaaaatttatttaaata
aaatttcattttattgttATCCCTTAGGTTAGAGTTGGATATCGAGCCAA
TTTTCGCCACAATGGCATTGTATGACTGTAAACAAAAGCGAAAGGTGCGG
CATTGTAAAGTTTACAGACAGAGTTGATATTACTTGATTATATTTTGTAA
TACGCGATTCCGCCCATCCTTTANCGGCATTGTCAAGTTTACAGACAGAG
TTGATATCACTTGATTATATTTTGTAATACGCGATTCCGcccattctttt
gttttccatcTTTCAAAGAAGGGATTAGAAGAGGGTTGACTATTTAATGG
TACAACAATAGTTACAGAAGATACTTGGATATTTTCAAGGAGACCAATTA
AGTTCCCTAAATAGGAAAAATTCATCTGTAATCGTTGATTTTGTGTACCT
TCTGTAACCGCCGTAGCAATAGACCTAACCAATTCTATGGTTTTACTTGT
CATGTTTGTTTTCCAGAGACAGAACTTCCTGATTTTTAGCCTGACATTCT
AAAAGTTAGAAGGATAATTAGATGGTGTGTAAGATATTTTTGTCTGTCAA
ACCCTTCTATAGCCTTGAGCAAAAGCTTTGAAACTTTTTCCGTAACTTTT
TTCCAAGGTTAAGATATTCAAATCACAAACTCTTGACTTTTGAAAACAAC
TGGGTCAAAAGACTTGGAGGTTTTCCTCATAACCATAGAAGCGTGCTACA
GACCAAAAATTGCAAGCGATCTGATTACCCCTTGAAGTTCTTATCATATG
TAACTATAATTTGCCTTTTTGTTCTATATTTAGATTTCGGAGAATTTCCA
TTTCGACATGAACCAGGACTGGCACAAAAAGATGTTATCACCTTACAACA
AGGGCAAGATAGACATCTCCACACTGGCAAAGTCTTGTATCTTTTCGGTG
ACCTACCCTTCCAGTGAAGTGTGTTTAGTTGTGAAACTGGAGAAGGTTCT
CCAACAAGGTGATATCACTGAATGTGCTGAGCCGTACATGAAAGATACTG
AAAGCCAAAAGGTAAACGATGACcgagtggtcaaaggcgtcagcgtctta
aaccagggattcgcggtccgaatccccgctccttccgatgttccgttcag
ttctgGCCGTGGACTCCGTGGAAACAATCGAATAACTGCCTAATAATTGA
CCAACCAACCCCACAAGAACCCAACCCCAAAAGAAGCTGTAATTTCCATT
ACTGGAATTACCTTTTTATAGAGGTTTTCTATGTTTTGTTATGCTGCGTA
gcttccaccattatggaaagaaacgttcgatttgcgcaAGGGGTCAcgcc
cactgacctttatataccctggaccaagcttttcctactttccctcgaaa
acttttgatgatgtagcgccgttagacgctaatttttaacactgcaatgg
cttctttacgggtaccaattcaaaaaaaacttcgatcaaagatggcggat
atagcttggtccagggaaaTATAAAGGTttcgaattcgaacgtttgcttc
cataatgaaGGAAGTTACATACAAAAAGAGGTGAAataaataatttacaa
aattttcggattgattgattaaagttattatttttaagATATAGAAAGGA
GATGCGCTTCTATAGTGACAAAGCCGaatgaacaaaagaatttcttaaat
tcgtGCCCGTGCGGTACCTAAAAGGGAGAAAATTGTTCCcttctttttgt
ttaaaaatactgTGTAAGCAAATTGCAAGAGATACGTTAAATGATGTGCT
TTAAAACTTAACCAATCCATTCGCTAGTTGGATGATAGATACAAAAAGCC
AAAAGCGTGatataaataattttcaaaaaagaccttaaaatcggagtttt
tgatttttttaaaaaagcgatgcattgttgGGTTGTTTCgagggtattac
aatagaaatctcttaggaattcctcgagggaattctatcgTAATACTACA
AAAACACTCCCATAATgcattatttttttagaaaaatcaaaaactccgat
atgATCTATTCTAGGGTTATGGTAGAGCTTTGATCTGAATCTTGGTCGAC
TTCCCTTTACTTTTGTAGAGTCGTGAAAAGGCCAGAGCACAAGCTGAACA
ATTCTGTGGAAGAAACGGTGAATACAGAATGCCATTTGCCTGGACTGCCA
TTCACCTTGTTGATGTCATCACTGGTGCTTCTGCTGCAGAACCGCCAAGC
TCCAACAATGAGAAAGACCAACCTTCACCAAAAGATCCTGTTCGAAGAGG
AGTAAGTCCACTTACTTTATCAGcggccgtagcatgaaggtagagcatcc
agctacggtgcgcaaggttgtgggttcaatccccagccgggtcataccaa
agattcccaaaatggtacttgatgcctctctgctggATGCTCATCaatta
aagagacggatcaagggtaagtggagaaatccagggaaaggagtggcgcc
ttcccctaccttcgggtagacagctatacgaaaagggagccttcgggtcg
ccctcgactgcgg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008507	XLOC_008507	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000205	supercontig	sc0000205:312928..320640 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19337	1.10416	2.6515	3.31415	2.01912	1.36668	2.4468	1.99689	1.39238	1.93199	1.9436	1.38669	1.45408	0.774652	0.933001	1.63568	1.64523	1.26791	1.37726	0.817461	1.36192	2.21348	0.417746	0.775949	1.85228	1.39715	0.79245	1.10822	1.67422	1.42002

Blast

[Close]

BLAST of TCONS_00015208 vs. Swiss-Prot (Human)
Match: DOCK7 (Dedicator of cytokinesis protein 7 OS=Homo sapiens GN=DOCK7 PE=1 SV=4)

HSP 1 Score: 312.383 bits (799), Expect = 2.729e-92
Identity = 188/427 (44.03%), Postives = 262/427 (61.36%), Query Frame = 3

Query:   81 GKERAFAQRLHRNTTSQTPSAASIPGDRRSQISRISFSEIQNYQTGITPTYQDVVDPLDFEEFILQHQPLADDSSTIAVLSEFPDDDIEVTSIQRKSRTVGLTVPDVLHSSNDPLVKDCVKSYTDDWSIVNRKYQVKGFGGKQKQRSRMDSSTQRLHKHEYEVDER--------KENDGKNNRQLLQATPRGSWASSIFDLQSCQPDPLLQGLLDNIPIEDVDKQNKVFREKNRVSSIFSIFPQNEEEQFVTRAPAV-IPQEHVGQRILVRCTELKLELDIEPIFATMALYDCKQKRKISENFHFDMNQDWHKKMLSPYNKGKIDISTLAKSCIFSVTYPSSXXXXXXXXXXXXQQGDITECAEPYMKDTESQKS-----REKARAQAEQFCGRNGEYRMPFAWTAIHLVDVITGASAAEPPSSNNE 1319
             + RAFAQ++ R   ++     S       Q+ + + + + N     T    + VDP+D E++++ H PLA DS  +  L EFP DDIEV    R  RT+   VP+   S  DP V+DC++SYT+DW+IV RKY   G G       +     + L K  +E DE          ++D K     +  TPRGSWA SIFDL++  PD LL  LLD  P E++D+QN   R+ NR   +F++ P  +EE+ + R     IP+EH GQR+LV+C  LK E++IEPIFA++ALYD K+K+KISENF+FD+N +  K +L P+      I+TLA+S IFS+TYPS +V LV+KLEKVLQQGDI ECAEPYM   E+  +      EK ++QA+QFC R G+YRMPFAWTAIHL+++++ A + E  S+  E
Sbjct:    2 AERRAFAQKISRTVAAEVRKQISGQYSGSPQLLK-NLNIVGNISHHTTVPLTEAVDPVDLEDYLITH-PLAVDSGPLRDLIEFPPDDIEVVYSPRDCRTLVSAVPE--ESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFESDEAPDGNSYQDDQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDRQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDIPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAA-ITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVE 423

The following BLAST results are available for this feature:

BLAST of TCONS_00015208 vs. Swiss-Prot (Human)

BLAST of TCONS_00015208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DOCK7	2.729e-92	44.03	Dedicator of cytokinesis protein 7 OS=Homo sapiens...	[more]

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TCONS_00015208 (transcript) - C. hemisphaerica