|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015191 ID=TCONS_00015191|Name=TCONS_00015191|organism=Clytia hemisphaerica|type=transcript|length=1582bp
ACTGGAGATGATCGACTATACAGAATACAggctagaaataaaaaaaaatt
aaaaaaagaatacaGGCTATCCGGGCTATCCACGTTTTCCAATTTGACTC
GATTAGTAGTTTATTTACATTGACGATGAAGTGTTTTCTTCTTTAGGTCA
AAAAAGGTTATCGAGACGGACGTAAAcaatgacaaaatttttttcgattg
atgctgaattttaatgattttgatGCTTTTCCTGttatgatttttcattt
ttctgatatcttttggcattgtaTAGATTTTTCATACCTGGCTTACAAAA
AGGTCATTCATCATCTCATTtGAACCAAAATTATGCAGTTTGACATTCGT
CGCTTTGATATTTATCGCAAGATCCCAAAGGATCTGACACAACCAACAAA
AACTGGCGCTTGTGTTTCTATTCTAAGTATCATCTTTATTGTGTTTTTGA
TGCTATCAGAACTTTCAAGTCTGTTATTCATTGATGTCAAAAGTGAAATG
TTTGTGGATATTTCATCATCACAAAAACCAGTTTACGTTAGATTAAATGT
ATCTTTACCAAAGATGGCTTGTGATTTTGTTGGGCTTGATCTTCAAGATT
CTCAAGGGAGACACGAAGTTGGATTTTTGAAAGATTCAAAGAAAGTTCCT
ATAAATAATGGAGAAGGATGTCGATTTGAAGGTCATTTTGAAATAAACCG
AATCCCTGGTAATTTTCATCTTTCAACACATAGTGCAGCACAACAGCCAC
AGAACCCAGATATGACACATATTGTTAATTCTTTACAATTTGGCGACATC
ATCGAGACAACAGGTGCTTTCAATGCAATGGGAGAATTAGATATGACTGA
ATATCCAGCAATGGCAACTCATAattacgtcatcaaaatcgtcCCAACCA
AGTTCAAGCGTCTTTCAGGTCAGATTGAAGACACTTTTCAATATTCGTAT
GCACAAAAAGAATTCATTGCTTATAATGGTCACCGACAACAACTAATGCC
TGCTATTTGGTTTAAGTATGATTTCAACCCAATCACCATTCAGTACACTG
AACAAAGGCAACCCTTTTATCACTTCATCACAATGTTTTGTGCTATTATT
GGTGGCACTTTTACAGTTGCAGGTATTATTGATACAATTATTTATACAGC
ACACAACATCATAAAGAAAGCTGAGATTGGAAAGTTATCATGAGTgttga
aaatttaaatctttTCGTACAATTTAAACTCGTATATGTTGAATTTTATG
TCAGAcacttttagaaattttgttttagaaaaaGATGTATGAGATTTTAG
ACCTTCTATAAAAAcagtatatatataaaagtttAGGATTTGCTCTgtat
tttgctttattttgaacATGCTTgtacagtagcgtagacaagacgGGTGC
ACAATTTATGTTAGATAGTATGTTTTATAGCACAGTAATTAGCTTTTTAT
ATCATGAATGGATGATAATAGTGTCAAATCTGATCTCCAacacaaatttt
gcacccctcgggtaacttaatgcatgtcctagaattgcattaatttttcc
gccccagttccagtccctaaaccataacaaac Run BLAST on NCBI protein sequence of TCONS_00015191-protein >TCONS_00015191-protein ID=TCONS_00015191-protein|Name=TCONS_00015191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MQFDIRRFDIYRKIPKDLTQPTKTGACVSILSIIFIVFLMLSELSSLLFI
DVKSEMFVDISSSQKPVYVRLNVSLPKMACDFVGLDLQDSQGRHEVGFLK
DSKKVPINNGEGCRFEGHFEINRIPGNFHLSTHSAAQQPQNPDMTHIVNS
LQFGDIIETTGAFNAMGELDMTEYPAMATHNYVIKIVPTKFKRLSGQIED
TFQYSYAQKEFIAYNGHRQQLMPAIWFKYDFNPITIQYTEQRQPFYHFIT
MFCAIIGGTFTVAGIIDTIIYTAHNIIKKAEIGKLS Run BLAST on NCBI transcript from alignment at sc0000205:227283..232914+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015191 ID=TCONS_00015191|Name=TCONS_00015191|organism=Clytia hemisphaerica|type=transcript|length=5632bp|location=Sequence derived from alignment at sc0000205:227283..232914+ (Clytia hemisphaerica)
ACTGGAGATGATCGACTATACAGAATACAggctagaaataaaaaaaaatt
aaaaaaagaatacaGGCTATCCGGGCTATCCACGTTTTCCAATTTGACTC
GATTAGTAGTTTATTTACATTGACGATGAAGTGTTTTCTTCTTTAGGTCA
AAAAAGGTTATCGAGACGGACGTAAAcaatgacaaaatttttttcgattg
atgctgaattttaatgattttgatGCTTTTCCTGttatgatttttcattt
ttctgatatcttttggcattgtaTAGATTTTTCATACCTGGCTTACAAAA
AGGTCATTCATCATCTCATTtgtaagtttatttttcaaatctatCTATTG
TTTACAACGAAATTTAGTGATAAAAAAGCCTCTAggtatttattatttta
ttagtaCAAAAAAAAGCATGTACATCTCTTAGTAGCTTAAATAGTTATAT
GTCAATAAAAGAAACCAATAATCCAGTTCTACATTACTCTATTATCTTAC
CAGTTATATACAGTaatttggtctaatgtcgacatccccttctaattttg
acacccttcttttcACTTTTGGAATGGGAATCTGATGGAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggttcacctgatt
tctaggtgaaccaagctctataattttagaactttgtctggctgaggtaa
aacttattttttctaaaattttgagcttggatatccaggctataaaTAAG
ACTAAAAGCTGTTGAaacgggtgcatgtcactagtccgacactttctagt
ccgacagtaaaatagtcagAATCTATAAGatatatttacaatttagaagt
tttttttccgacgtcacttttgtccgaaaacgaaagattttagagtgtcg
atgttgaataagggtatttcactgagataatattaatatgttcattttgg
cggcattttgacataattagaaacAAAGGAACAATCAAATTTgcgtaaag
ataatttataacaaaaagaatGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNatcccccccccccccccccaccaaaAGAAGGGTCTTtggtc
aaatccaacgtcggacatttttactgtcggactagaaagtgtcgaactac
tgacgacctcccgtTGAAACACCAAAACAGTCCATGTGGAAAAAACATTC
CATCTAGACTGGAGATGATCGACTATACAGAATACaggctaaaaataaaa
aaaaaaNATCTAGACTGGAGATGATCGACTATACAGAATACAggctagaa
ataaaaaaaaattaaaaaaagaatacaGGCTATCCGGGCTATCCACGTTT
TCCAATTTGACTCGATTAGTAGTTTATTTACATTGACGATGAAGTGTTTT
CTTCTTTAGGTCAAAAAAGGTTATCGAGACGGACGTAAAcaatgacaaaa
tttttttcgattgatgctgaattttaatgattttgatGCTTTTCCTGtta
tgatttttcatttttctgatatcttttggcattgtaTAGATTTTTCATAC
CTGGCTTACAAAAAGGTCATTCATCATCTCATTtgtaagtttatttttca
aatctatATATTGTTTACAACGAAATGTAGTGATAAAAAAGCCTCTAggt
atttattattttattagtaCAAAAAAAAGCATGTACATCTCTTAGTAGCT
TAAATAGTTAAATGTCAATAAAAGAAACCAATAATCCAGTTCTACATTAC
TCTATTATCTTACCAGTTATATACAGTaatttggtctaatgtcgacatcc
ccttctaattttgacacccttcttttcACTTTTGGAATGGGAATCTGATg
gaactatttttctttgcttagcaatcagagaggaaaaaatcttttgtcta
taaGACTGTAAGGGATCCAAACAGTCTTACTAATACTACTTCATGCTAAT
ATCTTTCtcatatttctatttctatttggttgagtcgcaggaggctttga
ggcctatttttcgcaactatagatacTTTCAATGAGCGcgccgtcagcac
cttggactgactacccaattcccctcacatggcatgggttgacccaggcg
aaggttcattcacttgccaagtgaaacGCTGCGAGTTGGAATcaaacctc
agtcgcctgtgtgCACTAagcaaggtcaatgaccactataccacagcgcc
tcaTATATTACCTTTCTTTCTGTCCTCGCTATCCCTGATTTCCTTTTTTG
AACCCCTTCCCATTTTTATTCTCTTCATTTTGTTCATGTTCCTGTTTCTC
TTTATGTTTTCAGTTTTGATCCTGTCCCCATTTGTTCTCACCTTCCAAAT
ATTCATCTTGTTCCAATTTTTACTCCCAGTTCCCATTTTTGATCAGGCgc
attttgagagattttttcaggttttaatgacgtcataacccAAAATgccc
aaaattttagccaattttcaaAGTTGTCCTGAGGCCTTATAACTCCtacc
atagaccttttttcaaagaggccaccctgttgaataattatgtagtccag
cagaaaaaattattacaatatgcatgatacagtagttatctatctatcta
tatatttcagTAGTTAACAACATAAATGTTTGTTCTCCCTACATATAAAA
GCATTaacaaaaataagataaatgaAATTGGTTTAATAATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatgcatggctctatc
attgtttttatggctggactacattattattcaacaggacgtcctctttg
aaaaaaggtctattgaactCAGGGCTTATCTGACCCCCGCTATTGATGAT
CTGATGGAAGctttgacgggggatataagccctggtacGCCTTAAAAACG
TACTTTTGGGCATGATGCGAAACAGATGCCGATAAGCATAACCTCTCTgg
tgagttagggcgtgtctagatttttaaaaatcccAAATCCCAaatccgcg
accaatagcacccattctcagggattcatttatggatttttagatgacct
atacctgaaggtttcaggacccggttgttacgtaattaaatattaaccta
aaaattaattatcaaagaaagtgtgaattatgacgtcatcaaattatggc
atcataaatcgtaaattagctctaactctataagtacatgtcgaatcttt
ctcaaatttggaccaaagatgcatctttAAATGGTGTCAaacttttcaat
taaaaatattttgaaatttttgacgacgtcagcaaaaaatgcaaaaaatc
gaaaaatgcaattttttgctgGCGTCATCAAATTTTCCCAAAACTTTTTT
NCTCTGaaagcaaaatcaaaacaatttccAAATAAACAAGGGAAAAAAGA
TTTTAGTATGTCTTTTCCacaagaaccagtaaattttcacAAAGTGAAAA
CtgcaaaatctctaaaaaaatcTTGGTGCCACaaaccaaaattttatttt
caaaatcaaaaccctAAGCAGAAATGAGTGAAAATATACTTTCaagattc
aaaaaataaaatcaagttCATTTTATATCTTATTACTGCTTGGTGTAAAG
TAAATGTCATGctgaaaaaaagttaataataGGATTGCAATCAACTGact
ttttgttattatttatttCAGGAACCAAAATTATGCAGTTTGACATTCGT
CGCTTTGATATTTATCGCAAGATCCCAAAGGATCTGACACAACCAACAAA
AACTGGCGCTTGTGTTTCTATTCTAAGTATCATCTTTATTGTGTTTTTGA
TGCTATCAGAACTTTCAAGTCTGTTATTCATTGATGTCAAAAGTGAAATG
TTTGTGGATATTTCATCATCACAAAAACCAGTTTACGTTAGATTAAATGT
ATCTTTACCAAAGATGGCTTGTGATTTTGTTGGGCTTGATCTTCAAGATT
CTCAAGGGAGACACGAAGTTGGATTTTTGAAAGATTCAAAGAAAGTTCCT
ATAAATAATGGAGAAGGATGTCGATTTGAAGGTCATTTTGAAATAAACCG
AATCCCTGGTAATTTTCATCTTTCAACACATAGTGCAGCACAACAGCCAC
AGAACCCAGATATGACACATATTGTTAATTCTTTACAATTTGGCGACATC
ATCGAGACAACAGGTGCTTTCAATGCAATGGGAGAATTAGATATGACTGA
ATATCCAGCAATGGCAACTCATAattacgtcatcaaaatcgtcCCAACCA
AGTTCAAGCGTCTTTCAGGTCAGATTGAAGACACTTTTCAATATTCGTAT
GCACAAAAAGAATTCATTGCTTATAATGGTCACCGACAACAACTAATGCC
TGCTATTTGGTTTAAGTATGATTTCAACCCAATCACCATTCAGTACACTG
AACAAAGGCAACCCTTTTATCACTTCATCACAATGTTTTGTGCTATTATT
GGTGGCACTTTTACAGTTGCAGGTATTATTGATACAATTATTTATACAGC
ACACAACATCATAAAGAAAGCTGAGATTGGAAAGTTATCATGAGTgttga
aaatttaaatctttTCGTACAATTTAAACTCGTATATGTTGAATTTTATG
TCAGAcacttttagaaattttgttttagaaaaaGATGTATGAGATTTTAG
ACCTTCTATAAAAAcagtatatatataaaagtttAGGATTTGCTCTgtat
tttgctttattttgaacATGCTTgtacagtagcgtagacaagacgGGTGC
ACAATTTATGTTAGATAGTATGTTTTATAGCACAGTAATTAGCTTTTTAT
ATCATGAATGGATGATAATAGTGTCAAATCTGATCTCCAacacaaatttt
gcacccctcgggtaacttaatgcatgtcctagaattgcattaatttttcc
gccccagttccagtccctaaaccataacaaac Coding sequence (CDS) from alignment at sc0000205:227283..232914+ >TCONS_00015191 ID=TCONS_00015191|Name=TCONS_00015191|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at sc0000205:227283..232914+ (Clytia hemisphaerica)
ATGCAGTTTGACATTCGTCGCTTTGATATTTATCGCAAGATCCCAAAGGA
TCTGACACAACCAACAAAAACTGGCGCTTGTGTTTCTATTCTAAGTATCA
TCTTTATTGTGTTTTTGATGCTATCAGAACTTTCAAGTCTGTTATTCATT
GATGTCAAAAGTGAAATGTTTGTGGATATTTCATCATCACAAAAACCAGT
TTACGTTAGATTAAATGTATCTTTACCAAAGATGGCTTGTGATTTTGTTG
GGCTTGATCTTCAAGATTCTCAAGGGAGACACGAAGTTGGATTTTTGAAA
GATTCAAAGAAAGTTCCTATAAATAATGGAGAAGGATGTCGATTTGAAGG
TCATTTTGAAATAAACCGAATCCCTGGTAATTTTCATCTTTCAACACATA
GTGCAGCACAACAGCCACAGAACCCAGATATGACACATATTGTTAATTCT
TTACAATTTGGCGACATCATCGAGACAACAGGTGCTTTCAATGCAATGGG
AGAATTAGATATGACTGAATATCCAGCAATGGCAACTCATAattacgtca
tcaaaatcgtcCCAACCAAGTTCAAGCGTCTTTCAGGTCAGATTGAAGAC
ACTTTTCAATATTCGTATGCACAAAAAGAATTCATTGCTTATAATGGTCA
CCGACAACAACTAATGCCTGCTATTTGGTTTAAGTATGATTTCAACCCAA
TCACCATTCAGTACACTGAACAAAGGCAACCCTTTTATCACTTCATCACA
ATGTTTTGTGCTATTATTGGTGGCACTTTTACAGTTGCAGGTATTATTGA
TACAATTATTTATACAGCACACAACATCATAAAGAAAGCTGAGATTGGAA
AGTTATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015191-exon-sc0000205-1491911889:227283..227603 | TCONS_00015191-exon-sc0000205-1491911889:227283..227603 | Clytia hemisphaerica | exon |
| TCONS_00015191-exon-sc0000205-1510915933:227283..227603 | TCONS_00015191-exon-sc0000205-1510915933:227283..227603 | Clytia hemisphaerica | exon |
| TCONS_00015191-exon-sc0000205-1575043694:227283..227603 | TCONS_00015191-exon-sc0000205-1575043694:227283..227603 | Clytia hemisphaerica | exon |
| TCONS_00015191-exon-sc0000205-1491911889:231654..232914 | TCONS_00015191-exon-sc0000205-1491911889:231654..232914 | Clytia hemisphaerica | exon |
| TCONS_00015191-exon-sc0000205-1510915933:231654..232914 | TCONS_00015191-exon-sc0000205-1510915933:231654..232914 | Clytia hemisphaerica | exon |
| TCONS_00015191-exon-sc0000205-1575043694:231654..232914 | TCONS_00015191-exon-sc0000205-1575043694:231654..232914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:227283..232914 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012936 | Erv_C |
Blast
BLAST of TCONS_00015191 vs. Swiss-Prot (Human)
Match: ERGI1 (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 4.150e-110 Identity = 160/290 (55.17%), Postives = 216/290 (74.48%), Query Frame = 3
Query: 333 MQFDIRRFDIYRKIPKDLTQPTKTGACVSILSIIFIVFXXXXXXXXXXFIDVKSEMFVDI--SSSQKPVYVRLNVSLPKMACDFVGLDLQDSQGRHEVGFLKDSKKVPINNGEGCRFEGHFEINRIPGNFHLSTHSAAQQPQNPDMTHIVNSLQFGDIIETT---GAFNAMGELDMTEYPAMATHNYVIKIVPTKFKRLSGQIEDTFQYSYAQKEFIAYNGHRQQLMPAIWFKYDFNPITIQYTEQRQPFYHFITMFCAIIGGTFTVAGIIDTIIYTAHNIIKKAEIGKL 1187
M FD RRFDIYRK+PKDLTQPT TGA +SI +FI+FL LSEL+ + +V +E++VD S + V LN+SLP + C+ VGLD+QD GRHEVG + +S K+P+NNG GCRFEG F IN++PGNFH+STHSA QPQNPDMTH+++ L FGD ++ GAFNA+G D +A+H+Y++KIVPT ++ SG+ ++QY+ A KE++AY+ H +++PAIWF+YD +PIT++YTE+RQP Y FIT CAIIGGTFTVAGI+D+ I+TA KK ++GK+
Sbjct: 1 MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYS-HTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKM 289
The following BLAST results are available for this feature:
|
