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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015142 ID=TCONS_00015142|Name=TCONS_00015142|organism=Clytia hemisphaerica|type=transcript|length=8717bp protein sequence of TCONS_00015142-protein >TCONS_00015142-protein ID=TCONS_00015142-protein|Name=TCONS_00015142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1980bp MGECADGILDTLLQVENLGNAIKTYPIPPIDVLNPERIQIIEDQQEAIADRun BLAST on NCBI transcript from alignment at sc0000204:279411..319305- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015142 ID=TCONS_00015142|Name=TCONS_00015142|organism=Clytia hemisphaerica|type=transcript|length=39895bp|location=Sequence derived from alignment at sc0000204:279411..319305- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000204:279411..319305- >TCONS_00015142 ID=TCONS_00015142|Name=TCONS_00015142|organism=Clytia hemisphaerica|type=CDS|length=53487bp|location=Sequence derived from alignment at sc0000204:279411..319305- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015142 vs. Swiss-Prot (Human)
Match: LRRK2 (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=2) HSP 1 Score: 445.662 bits (1145), Expect = 1.268e-125 Identity = 296/842 (35.15%), Postives = 483/842 (57.36%), Query Frame = 1
Query: 3232 DHIKTLDISHNDLTDIDQLVSYPSLLVKELLSNLQTLHLSENALTEFSPHCCEALSGXXXXXXXXXXXXDFPYEILHHKNIETIDLSKNLIT-TLHSDKVKDTFSLLKLDISHNKLKSFPNWIGASFPRMTKLSFRGNEIREIPDKSYDFRSIKEINLSHNDINRISPHFFRSCQSLEKIDLSHNRLESLPDFTLS-TLSKLFQVKLSHNCLKGQKPFYIPKALLAIPSLTMVDLSYNSIMQMPDPSFWSAKGLKELNLANNRIQQINLSTNSKDFWPEXXXXXXXXXXXXXXPAEIGFLDSLVSFDVSHN-QINELPNEIGLLKKVFELNLKENPLKHDPALQNFRPQDIIGHHRYKLKNAVPYRRMKLMLVGYGGRGKSSLLRQLVNMKHPTHNV--ATVGVELRDWELKPPSRFFEKSRPTFTLNTWDFAGQEEFYSTHQYFLSSRALYLAVFDASQTGTSELDNLRPWLLNIQASAPAAMVILVGTHIDQIPREVREEHVNLLLGYMNKFVCEPGLPKIEAKFVVNCMRETSAMEKLREKIYSIVSNFKYEGQQIIEQMVPNAYVLLEKLLCEEVAKMHAEKLLPIRKWDQIVKMCQDGKLVIDDEELKCALKFLKETGSIMHFSDASGTINNLYFIDPQWLCQMMARVVTIREINPWIDEHGVLPKEKSSQLFPND-KFPLEFLDRYFKLLQMFEIVLPLSDKDYLVTARVPQSPPDYIPKHQKNCVTDENVVTRRYRLPYFPSGFWTRLITRILVYQKENLSSEPNIID----YWQTGMYMSWDVNSLFLITTVP---EKQNIFDIYVPMNQHGFMXXXXXXXXXXNLIEEWYPGL 5718
++I +LD+S N+L DID L + V L +L+ L L +NALT F CE L L L+L NK FP +L I +D+S+N I ++ D +L + ++S+N+L P + ++ +L GN+I I + +K +NLS N I+ +S +F +C +E N L ++P S T+ KL Q K S C IP+A+L +P L +D+S N I +P P+ W + L+EL ++N+I ++LS + W + +L+LS+N ++ +P EIG L++L S DVS+N ++ PNE+G L K+++L L E L D + +DII + +LK AVPY RMKLM+VG G GK++LL+QL+ K + ATVG++++DW P + +K + LN WDFAG+EEFYSTH +F++ RALYLAV+D S+ G +E+D ++PWL NI+A A ++ VILVGTH+D + R+ ++ + + + + G P I VN E+ A+ KLR+ I + NFK Q ++ Q++P+ YV LEK++ E + E P+ +++++ ++ +L +D+ EL A+ FL E+G ++HF D + +++LYF++P+WLC++MA+++T++ G++ + + KFP ++ +YFKLL+ F+I LP+ + +YL+ VP S D+ P + + ++ R Y +PYFP GFW+RLI R+L LS + YW+ G+Y++W + L+ + ++ I VP + G ++LG VVD +D+L+EEW+PGL
Sbjct: 982 EYITSLDLSANELRDIDALSQKCCISVH--LEHLEKLELHQNALTSFPQQLCETLKSLTHLDLHSNKFTSFPSYLLKMSCIANLDVSRNDIGPSVVLDPTVKCPTLKQFNLSYNQLSFVPENLTDVVEKLEQLILEGNKISGICS-PLRLKELKILNLSKNHISSLSENFLEACPKVESFSARMNFLAAMPFLPPSMTILKLSQNKFS--C--------IPEAILNLPHLRSLDMSSNDIQYLPGPAHWKSLNLRELLFSHNQISILDLSEKAY-LWSRVEKLHLSHNKLKEIPPEIGCLENLTSLDVSYNLELRSFPNEMGKLSKIWDLPLDELHLNFDFKHIGCKAKDIIRFLQQRLKKAVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW----PIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK-GQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKI---TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRDQLVVGQLIPDCYVELEKIILSERKNVPIE--FPVIDRKRLLQLVRENQLQLDENELPHAVHFLNESGVLLHFQDPALQLSDLYFVEPKWLCKIMAQILTVKVEGCPKHPKGIISRRDVEKFLSKKRKFPKNYMSQYFKLLEKFQIALPIGE-EYLL---VPSSLSDHRPVIELPHCENSEIIIRLYEMPYFPMGFWSRLINRLLEISPYMLSGRERALRPNRMYWRQGIYLNWSPEAYCLVGSEVLDNHPESFLKITVPSCRKGCILLGQVVDHIDSLMEEWFPGL 1795 HSP 2 Score: 298.901 bits (764), Expect = 9.568e-81 Identity = 207/712 (29.07%), Postives = 366/712 (51.40%), Query Frame = 2
Query: 5978 VAPDVVFADIDQSLIVERINIDENGL-RAKKKKLGDGAFSTVYKINVEGENIAAKVYIKNGGINANRLLRQEVDILTKIQHPCLISITGVSLRPRMLLLEYAPLGNLDVVLKSGRA-MSRGIQHRIGLQIIEGLAYLHDRGIVYRDLKPSNVLVFSLSIGMHINVKLSDYGISQWSSILGLTAVKGTAGYQAPEVSQRNISYDGKVDIVSFGVTFYEIVTGGMHPYGDVPFQSQLDAMILMNKPINSISKHGCAPWTDIENLIQQCLHPNPEFRPSASKIRDALLDANIVCLKREVAISREQSVECTVSRKFTTHDNLNKIEVWAGSGETEQSQISWFTLGADKKQTVQGMFVKEGRILCME------PYKHFMMVGTNKGYVIVFHA-DTKKRHNVVTFNDAVLSM------KVVSSKDSIVLGLASGDLHVAAGKDL-LTGNYDRENPYNASNAPIKI-DAEIPKGPIACL-----ATLGNTLLCGYGQSLLELRMD-------SGRVVRQINVGSKA-PNIVSALTVTKKRVFVTCREDHQIKVYE--TSKLFISTCITDVIDCHEILQ-------KEYATLTPRDCRPISMAIVESSNIWIGTESGHVIILDTNKTKNVEPLNIISRSKSTVRSITVCPRLXXXXXXXXXXXXXFWPWSSPYTVQKDNKENLDGYCLVWDSELPKQKKHLLAVYKKREDEAKEMSENS 7996
+APD++ AD+ ++++ +N DE +A + LGDG+F +VY+ EGE +A K++ K+ + RLLRQE+ +L + HP LIS+ +RPRML++E A G+LD +L+ +A ++R +QHRI L + +GL YLH I+YRDLKP NVL+F+L I K++DYGI+Q+ +G+ +GT G++APEV++ N+ Y+ + D+ SFG+ Y+I+T G + F ++ D + + K + + ++GCAPW +E LI+QCL NP+ RP+++++ D L A +VCL R + + + VEC V+ TH N +W G G T++ Q+S+ L + + + V + RILC+ + +++ GT G ++V + D KKRH + D+V + K K+ +++G A G L + K + L G AP+KI + P+ CL +T N + G G + D R + + + + NI++ + T +++ + ++V++ T KL +IDC L+ KE R ++ + +++ +WIGT GH+++LD + + + +I ++VR + + + ++ T ++ + VWD LP + ++L + R++ A++M S
Sbjct: 1855 IAPDLILADLPRNIM---LNNDELEFEQAPEFLLGDGSFGSVYRAAYEGEEVAVKIFNKHTSL---RLLRQELVVLCHLHHPSLISLLAAGIRPRMLVMELASKGSLDRLLQQDKASLTRTLQHRIALHVADGLRYLHSAMIIYRDLKPHNVLLFTLYPNAAIIAKIADYGIAQYCCRMGIKTSEGTPGFRAPEVARGNVIYNQQADVYSFGLLLYDILTTGGRIVEGLKFPNEFDELEIQGKLPDPVKEYGCAPWPMVEKLIKQCLKENPQERPTSAQVFDILNSAELVCLTRRILLPKNVIVECMVA----THHNSRNASIWLGCGHTDRGQLSFLDLNTEGYTSEE---VADSRILCLALVHLPVEKESWIVSGTQSGTLLVINTEDGKKRHTLEKMTDSVTCLYCNSFSKQSKQKNFLLVGTADGKLAIFEDKTVKLKG-----------AAPLKILNIGNVSTPLMCLSESTNSTERNVMWGGCGTKIFSFSNDFTIQKLIETRTSQLFSYAAFSDSNIITVVVDTA--LYIAKQNSPVVEVWDKKTEKL------CGLIDCVHFLREVMVKENKESKHKMSYSGRVKTLCLQKNTALWIGTGGGHILLLDLSTRRLIR---VIYNFCNSVRVMMT------AQLGSLKNVMLVLGYNRKNTEGTQKQKEIQSCLTVWDINLPHEVQNLEKHIEVRKELAEKMRRTS 2525 The following BLAST results are available for this feature:
BLAST of TCONS_00015142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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