TCONS_00015096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015096
Unique NameTCONS_00015096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015096 ID=TCONS_00015096|Name=TCONS_00015096|organism=Clytia hemisphaerica|type=transcript|length=785bp
TTTAATCTTTccccaagcaagaaaaagtcaCGCCTTAAAGATTTTCGCCG
CATTTTTGAATGACGGATATAGGGctgtttttacacttttcgaaagcTGG
TGATAGATTTAACTTCCAATCAAATGTTTGTGCGAAAAACTACACGAATA
ACGCAAAGATAGATGGAAAGTAAAGTAGCTTCAAGATATTCCactctagc
tcttcgggctttaaactcgatgCTTTTCATTGGGTTTAAAGCCTCTGGGT
AGTTCTACCACAACCATTCTTAGTTTGAGCTTATGAATGTGTAGGTCTCC
GCAATTTCAGTTGTGTAGACTAAATCCAATAAAACTTTAGTGGCGTGCAT
ATTGGAGCCATTCGTGAATCTAATATCCCGCTAATATCTCACTAATGAAA
CCTTTTCTAAATGTTTGAGGACAAGGTTATCTAAATTTACCTTTCGATTT
TGAGAAACTATGAAAGAGTAAAGTAAGGCGACTGTCAAAACGTGAGATAT
ATGCACGTCAGATGTGCCAACAGGAAGGCGTGACTCGCGGTCTGGAACTT
CGAGAGCGTATATGTACACACATATTGAAACATGCTTTTACTTTCAAAAC
ATCAATACCGTATTTGGACGCTACTTTCGATGTCACGTATTATTAAAATG
AACGCCCACCGGTAGAAAATAATCATTTTGAATGTGACTTGCACTTctag
accagcgtccgagattcaaaaaaggccttaaaaatggttttcgtagggca
ccccttagatcagggcaaatttttgatattatgct
Run BLAST on NCBI

transcript from alignment at sc0000203:351801..352585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015096 ID=TCONS_00015096|Name=TCONS_00015096|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000203:351801..352585 (Clytia hemisphaerica)
agcataatatcaaaaatttgccctgatctaaggggtgccctacgaaaacc
atttttaaggccttttttgaatctcggacgctggtctagAAGTGCAAGTC
ACATTCAAAATGATTATTTTCTACCGGTGGGCGTTCATTTTAATAATACG
TGACATCGAAAGTAGCGTCCAAATACGGTATTGATGTTTTGAAAGTAAAA
GCATGTTTCAATATGTGTGTACATATACGCTCTCGAAGTTCCAGACCGCG
AGTCACGCCTTCCTGTTGGCACATCTGACGTGCATATATCTCACGTTTTG
ACAGTCGCCTTACTTTACTCTTTCATAGTTTCTCAAAATCGAAAGGTAAA
TTTAGATAACCTTGTCCTCAAACATTTAGAAAAGGTTTCATTAGTGAGAT
ATTAGCGGGATATTAGATTCACGAATGGCTCCAATATGCACGCCACTAAA
GTTTTATTGGATTTAGTCTACACAACTGAAATTGCGGAGACCTACACATT
CATAAGCTCAAACTAAGAATGGTTGTGGTAGAACTACCCAGAGGCTTTAA
ACCCAATGAAAAGcatcgagtttaaagcccgaagagctagagtGGAATAT
CTTGAAGCTACTTTACTTTCCATCTATCTTTGCGTTATTCGTGTAGTTTT
TCGCACAAACATTTGATTGGAAGTTAAATCTATCACCAgctttcgaaaag
tgtaaaaacagCCCTATATCCGTCATTCAAAAATGCGGCGAAAATCTTTA
AGGCGtgactttttcttgcttggggAAAGATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008458XLOC_008458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015096-exon-sc0000203-1491911889:351801..352585TCONS_00015096-exon-sc0000203-1491911889:351801..352585Clytia hemisphaericaexon
TCONS_00015096-exon-sc0000203-1510915933:351801..352585TCONS_00015096-exon-sc0000203-1510915933:351801..352585Clytia hemisphaericaexon
TCONS_00015096-exon-sc0000203-1575043694:351801..352585TCONS_00015096-exon-sc0000203-1575043694:351801..352585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:351801..352585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0735327	0.276421	0.327193	0.499467	0.771782	0.333699	1.00825	0.875835	0.0629351	0.0930121	0.21197	0.121215	0.291719	0.235226	0.0910528	0.14503	0.0711075	0.300523	0.314441	0.321627	0.305119	0.685181	0	0	0.0751386	0.127707	0.289578	0.125974	0.465531	0.173186
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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