TCONS_00015076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015076
Unique NameTCONS_00015076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015076 ID=TCONS_00015076|Name=TCONS_00015076|organism=Clytia hemisphaerica|type=transcript|length=848bp
CTTTTTCCCATGAAACAACCTGTAGGTGTAGCAGCTAAATCGACCGCATC
ATCAAACTTAGaatattttacagaaaaagcTTCCCTAGAGATACCATCAA
TTACTGATGACCCTCTTGGGCTGCTGAGATCAAGGATAACTCTGATTGAA
CCATCAGGCTTCGGCACACCACCCAAAGgagaaaaatggaaatttttaaa
aggatAGTGAAGGGACCTTTTGTGTGTCCCCTGTTCATCTCTTTGAGAAT
GGCTGTAGAAATGTCCTCAGAAACATCATTGGACGAAGAAAGTGGTCTTT
TCCTTCCTGGTgtcatttttgtaataaaaCCAACACGGAAACCATCTGTG
AAACCAGACTTAAGAAAATCAACGATGTACAGGTCAGGATGACCctcaag
aaaaacaagaaacaaTCGTAAATTAATCCTGCAAATAGCAGAAGGAGGTA
AGGGAAACGATCCTACTGGTACACTATCCAGAGGGCCTGGATGCTCTGCA
GCTGTGTGCTGGGTGACCTGGCCTTCCACAGAAGGAGCATTTATGGGCAT
AACGACACGTGGCGCCTCTCCTGCAGAAGCTAGAGTTAAAATAGGGGCAT
GCCTCAGTCGATGCATCATGGGCACTTCCTTGAAAGGGATTTTGTGCATT
AGCACCAGAAATGGGAGGTCTAGGTGGTCGAGACTGCGTGAAAGTACTAG
TAGTTTGGTCCTGTAAGGACGAAGGGTTAGGACACCTAGTTGCATAATGA
CCTTTTTTCTTACATTTGTAGCAAGTCACATCAGGAAACGAACCAGCTTG
GCTGGAGGAAGAGCTACCAACTTGAGGCCTcaaagttgaagaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00015076-protein

>TCONS_00015076-protein ID=TCONS_00015076-protein|Name=TCONS_00015076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
IFSSTLRPQVGSSSSSQAGSFPDVTCYKCKKKGHYATRCPNPSSLQDQTT
STFTQSRPPRPPISGANAQNPFQGSAHDASTEACPYFNSSFCRRGATCRY
AHKCSFCGRPGHPAHSCRASRPSG
Run BLAST on NCBI

transcript from alignment at sc0000203:37684..38531

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015076 ID=TCONS_00015076|Name=TCONS_00015076|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000203:37684..38531 (Clytia hemisphaerica)
attttttcttcaactttgAGGCCTCAAGTTGGTAGCTCTTCCTCCAGCCA
AGCTGGTTCGTTTCCTGATGTGACTTGCTACAAATGTAAGAAAAAAGGTC
ATTATGCAACTAGGTGTCCTAACCCTTCGTCCTTACAGGACCAAACTACT
AGTACTTTCACGCAGTCTCGACCACCTAGACCTCCCATTTCTGGTGCTAA
TGCACAAAATCCCTTTCAAGGAAGTGCCCATGATGCATCGACTGAGGCAT
GCCCCTATTTTAACTCTAGCTTCTGCAGGAGAGGCGCCACGTGTCGTTAT
GCCCATAAATGCTCCTTCTGTGGAAGGCCAGGTCACCCAGCACACAGCTG
CAGAGCATCCAGGCCCTCTGGATAGTGTACCAGTAGGATCGTTTCCCTTA
CCTCCTTCTGCTATTTGCAGGATTAATTTACGAttgtttcttgtttttct
tgagGGTCATCCTGACCTGTACATCGTTGATTTTCTTAAGTCTGGTTTCA
CAGATGGTTTCCGTGTTGGttttattacaaaaatgacACCAGGAAGGAAA
AGACCACTTTCTTCGTCCAATGATGTTTCTGAGGACATTTCTACAGCCAT
TCTCAAAGAGATGAACAGGGGACACACAAAAGGTCCCTTCACTatccttt
taaaaatttccatttttctcCTTTGGGTGGTGTGCCGAAGCCTGATGGTT
CAATCAGAGTTATCCTTGATCTCAGCAGCCCAAGAGGGTCATCAGTAATT
GATGGTATCTCTAGGGAAgctttttctgtaaaatattCTAAGTTTGATGA
TGCGGTCGATTTAGCTGCTACACCTACAGGTTGTTTCATGGGAAAAAG

Coding sequence (CDS) from alignment at sc0000203:37684..38531

>TCONS_00015076 ID=TCONS_00015076|Name=TCONS_00015076|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000203:37684..38531 (Clytia hemisphaerica)
attttttcttcaactttgAGGCCTCAAGTTGGTAGCTCTTCCTCCAGCCA
AGCTGGTTCGTTTCCTGATGTGACTTGCTACAAATGTAAGAAAAAAGGTC
ATTATGCAACTAGGTGTCCTAACCCTTCGTCCTTACAGGACCAAACTACT
AGTACTTTCACGCAGTCTCGACCACCTAGACCTCCCATTTCTGGTGCTAA
TGCACAAAATCCCTTTCAAGGAAGTGCCCATGATGCATCGACTGAGGCAT
GCCCCTATTTTAACTCTAGCTTCTGCAGGAGAGGCGCCACGTGTCGTTAT
GCCCATAAATGCTCCTTCTGTGGAAGGCCAGGTCACCCAGCACACAGCTG
CAGAGCATCCAGGCCCTCTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008438XLOC_008438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015076-exon-sc0000203-1491911889:37684..38531TCONS_00015076-exon-sc0000203-1491911889:37684..38531Clytia hemisphaericaexon
TCONS_00015076-exon-sc0000203-1510915933:37684..38531TCONS_00015076-exon-sc0000203-1510915933:37684..38531Clytia hemisphaericaexon
TCONS_00015076-exon-sc0000203-1575043694:37684..38531TCONS_00015076-exon-sc0000203-1575043694:37684..38531Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015076-proteinTCONS_00015076-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:37684..38531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07549	2.13649	1.12952	0.841381	4.79429	4.464	5.60984	5.38082	5.43155	4.75189	7.67757	6.54014	8.57571	9.92571	8.64623	6.54969	8.94881	10.1425	5.97866	6.34812	6.66509	6.67488	2.50522	3.93675	20.7194	13.6377	0.984227	1.46711	2.79591	2.21567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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