TCONS_00015076-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015076-protein
Unique NameTCONS_00015076-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length124

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015076-protein ID=TCONS_00015076-protein|Name=TCONS_00015076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
IFSSTLRPQVGSSSSSQAGSFPDVTCYKCKKKGHYATRCPNPSSLQDQTT
STFTQSRPPRPPISGANAQNPFQGSAHDASTEACPYFNSSFCRRGATCRY
AHKCSFCGRPGHPAHSCRASRPSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008438XLOC_008438Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015076TCONS_00015076Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 103..119
e-value: 0.43
score: 13.5
coord: 25..41
e-value: 0.0011
score: 28.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 25..41
e-value: 2.7E-5
score: 23.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 14..62
e-value: 3.2E-9
score: 36.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 26..41
score: 9.867
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 14..49
NoneNo IPR availableGENE3D4.10.1000.10coord: 65..119
e-value: 2.0E-4
score: 20.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..76
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 81..102
e-value: 1.0E-4
score: 22.0
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 78..105
score: 13.075

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015076-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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