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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015074 ID=TCONS_00015074|Name=TCONS_00015074|organism=Clytia hemisphaerica|type=transcript|length=1051bp
GGCTACAATGGAACATAAGCTAGAGACCATCTTGGGGGAATcaccaaaaa
tgtaaacaacgTTGGCTAGAGAATTGAGATAACGAGATGTAATTGTGTTG
ATTAGAAAAAGGGGTTAGAAACTCACAAGGAAAGggatttgtttttaatt
aaaatgtaCTAAACACTAAGTCCTAGGAATATTTGATTCTAAAATTTGTT
TTAGTAGAAGTCGGTTTTCATATATATGCCAGTTCGAAAGTAAGTGATTA
AGTTCATTTTGTTTGTCAGTCGTTAATGTAGAGGATGTTTTTAGCTTGTT
GTGTTTGTTTTTGGTGATTAGGATATCCATGATGTCAACGTTATTTTGTG
TACATGTATCAAAGATATTCTGTAAAATTGATACTGAGCGCAGGTCGTAG
GGTGTAGTTAGTAGAGTCAGAAGGTATTTTGACGTTGAAGGGTTTCTCAT
AAGTTGCTGTACCAAGTTGATTTGGCGGTTAGTAATTTCATTTGAGATCG
AGTCTAGGTTGAAGTATTTGATTAGATCATTGCTACTATGTTTCGATAGG
TTGAGGAGATGCTTTAGTGCTGAGCGACACTGTCTGcttatgttttcaat
gaaactatTTGTACAGTCTGTAATCTCTATGCCGTAGAGAACTTTGGGAA
CGACAATTGATCGAAAGGTTGTTGCAATCGTTGCTGGGTGCATTTTCCTG
ATACCACAAGAGGTGAGAGGNATGAAACTATTTGTACAGTCTGTAATCTC
TATGCCGTAGAGAACTTTGGGAACGACAATTGATCGAAAGGTTGTTGCAA
TCGTTGCTGGGTGCATTTTCCTGATACCACAAGAGGTGAGAGGTGCTGTA
GTTGCCCAGAGTTCAGAAATGCGTGAGTTTTGGTGGTATCTTAGCGATAG
TTTGTCTTTGAACATCTGCCAGTTGAAGCCTAAGTGTTTAAGTTGTGACT
TGGTATGGATTTCTTTGTGATTGAGGGACAGTTTGGGGTGTTCGATCGGT
GATTTCCCTGAAATGAGAAATTGGGTTTTTGATAGTTGAATTTGATTTCG
T Run BLAST on NCBI protein sequence of TCONS_00015074-protein >TCONS_00015074-protein ID=TCONS_00015074-protein|Name=TCONS_00015074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
RNQIQLSKTQFLISGKSPIEHPKLSLNHKEIHTKSQLKHLGFNWQMFKDK
LSLRYHQNSRISELWATTAPLTSCGIRKMHPATIATTFRSIVVPKVLYGI
EITDCTNSFXPLTSCGIRKMHPATIATTFRSIVVPKVLYGIEITDCTNSF
IENISRQCRSALKHLLNLSKHSSNDLIKYFNLDSISNEITNRQINLVQQL
MRNPSTSKYLLTLLTTPYDLRSVSILQNIFDTCTQNNVDIMDILITKNKH
NKLKTSSTLTTDKQNELNHLLSNWHIYENRLLLKQILESNIPRT Run BLAST on NCBI transcript from alignment at sc0000203:5593..6643 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015074 ID=TCONS_00015074|Name=TCONS_00015074|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0000203:5593..6643 (Clytia hemisphaerica)
ACGAAATCAAATTCAACTATCAAAAACCCAATTTCTCATTTCAGGGAAAT
CACCGATCGAACACCCCAAACTGTCCCTCAATCACAAAGAAATCCATACC
AAGTCACAACTTAAACACTTAGGCTTCAACTGGCAGATGTTCAAAGACAA
ACTATCGCTAAGATACCACCAAAACTCACGCATTTCTGAACTCTGGGCAA
CTACAGCACCTCTCACCTCTTGTGGTATCAGGAAAATGCACCCAGCAACG
ATTGCAACAACCTTTCGATCAATTGTCGTTCCCAAAGTTCTCTACGGCAT
AGAGATTACAGACTGTACAAATAGTTTCATNCCTCTCACCTCTTGTGGTA
TCAGGAAAATGCACCCAGCAACGATTGCAACAACCTTTCGATCAATTGTC
GTTCCCAAAGTTCTCTACGGCATAGAGATTACAGACTGTACAAatagttt
cattgaaaacataagCAGACAGTGTCGCTCAGCACTAAAGCATCTCCTCA
ACCTATCGAAACATAGTAGCAATGATCTAATCAAATACTTCAACCTAGAC
TCGATCTCAAATGAAATTACTAACCGCCAAATCAACTTGGTACAGCAACT
TATGAGAAACCCTTCAACGTCAAAATACCTTCTGACTCTACTAACTACAC
CCTACGACCTGCGCTCAGTATCAATTTTACAGAATATCTTTGATACATGT
ACACAAAATAACGTTGACATCATGGATATCCTAATCACCAAAAACAAACA
CAACAAGCTAAAAACATCCTCTACATTAACGACTGACAAACAAAATGAAC
TTAATCACTTACTTTCGAACTGGCATATATATGAAAACCGACTTCTACTA
AAACAAATTTTAGAATCAAATATTCCTAGGACTTAGTGTTTAGtacattt
taattaaaaacaaatccCTTTCCTTGTGAGTTTCTAACCCCTTTTTCTAA
TCAACACAATTACATCTCGTTATCTCAATTCTCTAGCCAAcgttgtttac
atttttggtgATTCCCCCAAGATGGTCTCTAGCTTATGTTCCATTGTAGC
C Coding sequence (CDS) from alignment at sc0000203:5593..6643 >TCONS_00015074 ID=TCONS_00015074|Name=TCONS_00015074|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000203:5593..6643 (Clytia hemisphaerica)
CGAAATCAAATTCAACTATCAAAAACCCAATTTCTCATTTCAGGGAAATC
ACCGATCGAACACCCCAAACTGTCCCTCAATCACAAAGAAATCCATACCA
AGTCACAACTTAAACACTTAGGCTTCAACTGGCAGATGTTCAAAGACAAA
CTATCGCTAAGATACCACCAAAACTCACGCATTTCTGAACTCTGGGCAAC
TACAGCACCTCTCACCTCTTGTGGTATCAGGAAAATGCACCCAGCAACGA
TTGCAACAACCTTTCGATCAATTGTCGTTCCCAAAGTTCTCTACGGCATA
GAGATTACAGACTGTACAAATAGTTTCATNCCTCTCACCTCTTGTGGTAT
CAGGAAAATGCACCCAGCAACGATTGCAACAACCTTTCGATCAATTGTCG
TTCCCAAAGTTCTCTACGGCATAGAGATTACAGACTGTACAAatagtttc
attgaaaacataagCAGACAGTGTCGCTCAGCACTAAAGCATCTCCTCAA
CCTATCGAAACATAGTAGCAATGATCTAATCAAATACTTCAACCTAGACT
CGATCTCAAATGAAATTACTAACCGCCAAATCAACTTGGTACAGCAACTT
ATGAGAAACCCTTCAACGTCAAAATACCTTCTGACTCTACTAACTACACC
CTACGACCTGCGCTCAGTATCAATTTTACAGAATATCTTTGATACATGTA
CACAAAATAACGTTGACATCATGGATATCCTAATCACCAAAAACAAACAC
AACAAGCTAAAAACATCCTCTACATTAACGACTGACAAACAAAATGAACT
TAATCACTTACTTTCGAACTGGCATATATATGAAAACCGACTTCTACTAA
AACAAATTTTAGAATCAAATATTCCTAGGACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015074-exon-sc0000203-1491911889:5593..6643 | TCONS_00015074-exon-sc0000203-1491911889:5593..6643 | Clytia hemisphaerica | exon |
| TCONS_00015074-exon-sc0000203-1510915933:5593..6643 | TCONS_00015074-exon-sc0000203-1510915933:5593..6643 | Clytia hemisphaerica | exon |
| TCONS_00015074-exon-sc0000203-1575043694:5593..6643 | TCONS_00015074-exon-sc0000203-1575043694:5593..6643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:5593..6643 . |
Blast
The following BLAST results are available for this feature:
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