TCONS_00015046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015046
Unique NameTCONS_00015046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015046 ID=TCONS_00015046|Name=TCONS_00015046|organism=Clytia hemisphaerica|type=transcript|length=1804bp
AGCTCACACATGTGGCCAATTTGGTAAGTTTTTTCAGCCACTCCTTTTGC
TTTTCTGTTTGCATGGccacattttgttttgtttgcctCAGCAGCTCATC
AGTCCAGTGTTGAGGCACAACACCTGGACTTAGGTTAAGTTAGGTTAAGT
TTTTCCTAgtttctttacaatatattttgataTCTTGATAGCTATACATT
TTCCCAGATGCCTTTCTTACAGGATCTGGACTTAGCCATTTTGTCATGGT
CTGGACTTAGTCATTTTTCACATTCTAGTCTTAGAATTTAGttcttttta
tttactttgtttCTAGTTACTTATGTTTGtcttaatttctttttacagTT
TGAACCTCTTGTAATCACATGAATGAAAGAAAGATAGCTGACATGCTGAT
CTAAATCATTTTGCAAAGTTACAAACATCCCCTACTTGTGTGTAGTCTGA
CACCGCAACATTCAAACAAAGTGCAACCTGTATGTCTGGTAGACCACGCC
GACACATCGAACCATACGACTTTGCAGTTTATGGTACTACTGGGAAGAAG
GTTCCTCCCAAACACCAACGATCCCTAGCTGATCAACCTTCACAAAACCG
ATCCGTAGCCGATCAACCTTCACAAGACCGATCCGTAGCCGATCTATCTC
CACAACACAGATCCGTAGCCGATCAACCTTCACAAGACCGATCCGTAACC
GATCAATCTTCACAACTCCGATCCGTAGCCGATCAATCTTCACAACTCCG
ATCCGTAGCCGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTT
CACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCT
GATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCG
ATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTT
CACAACTCCGATCCGTAGTCGATCAACCCCCACATCAACAATCTGTATTT
GATTCATCTCATCAACAATATACTGACTCAAATAACTTGCCGTCTGACTT
AAACTTTGACGACATCACTCTACGACCCATTATCAAAAGCAATACGCGCC
AAGCTGAGCATTGAATCAATCAAGCAAACGATTGACAACATCAAGCCATC
CCTGATATCTGACTTCAAGGATTTGAGTGACGCAAATCTCATTCAACTCA
AGGAGGCATCAACATCTATCAACAACACTGTCATCACTATTTCAGAGAGG
TATGAACGTTTACTTCAACAAGATATCACTGATCCAACGCTTCTCACTGA
ACTTGATAAAATCGGCATAGCCCAGAAAAAGCTTTGCGAATCTGAGACCA
AATATCAAGGAGACCTTGACAAGGAAATCATTTCCAGAGACGTCTACAAA
CAACGGACATTTGATGAATCCAAGCTCAACATCAAACTGGACAAATTCTC
GGGGTATGAAAGTTCAATGGACATCTACACATTTCAGACAGCCTTCGAGA
AGATATACAAACGAACAACTCCACATCATATGCTACCTGATCTGCTAAAG
AACAATCTGCTAAAAGGAGGTGCTTTATTCCTTGTCAAGACCCTCGAAGA
CATCAACGTCATCTGGGCCCGGCTGAAGTCTGCCTACGGAGACACCAAAC
TGTTACTTGCAAAGAAGCTGAAAACAATCATCGAAAATGAATCTCTTGGT
CGAAGACAAGACTCTGAACATCTAATCGATACTCTGAACAACCTTATCAA
TACACTAAAGGAATTGATTTCACTAGCTGAACAGCACCAAATCGAAGAAC
ATCT
Run BLAST on NCBI

transcript from alignment at sc0000203:166941..168744-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015046 ID=TCONS_00015046|Name=TCONS_00015046|organism=Clytia hemisphaerica|type=transcript|length=1804bp|location=Sequence derived from alignment at sc0000203:166941..168744- (Clytia hemisphaerica)
AGCTCACACATGTGGCCAATTTGGTAAGTTTTTTCAGCCACTCCTTTTGC
TTTTCTGTTTGCATGGCCACATTTTGTTTTGTTTGCCTCAGCAGCTCATC
AGTCCAGTGTTGAGGCACAACACCTGGACTTAGGTTAAGTTAGGTTAAGT
TTTTCCTAGTTTCTTTACAATATATTTTGATATCTTGATAGCTATACATT
TTCCCAGATGCCTTTCTTACAGGATCTGGACTTAGCCATTTTGTCATGGT
CTGGACTTAGTCATTTTTCACATTCTAGTCTTAGAATTTAGTTCTTTTTA
TTTACTTTGTTTCTAGTTACTTATGTTTGTCTTAATTTCTTTTTACAGTT
TGAACCTCTTGTAATCACATGAATGAAAGAAAGATAGCTGACATGCTGAT
CTAAATCATTTTGCAAAGTTACAAACATCCCCTACTTGTGTGTAGTCTGA
CACCGCAACATTCAAACAAAGTGCAACCTGTATGTCTGGTAGACCACGCC
GACACATCGAACCATACGACTTTGCAGTTTATGGTACTACTGGGAAGAAG
GTTCCTCCCAAACACCAACGATCCCTAGCTGATCAACCTTCACAAAACCG
ATCCGTAGCCGATCAACCTTCACAAGACCGATCCGTAGCCGATCTATCTC
CACAACACAGATCCGTAGCCGATCAACCTTCACAAGACCGATCCGTAACC
GATCAATCTTCACAACTCCGATCCGTAGCCGATCAATCTTCACAACTCCG
ATCCGTAGCCGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTT
CACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCT
GATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCG
ATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTT
CACAACTCCGATCCGTAGTCGATCAACCCCCACATCAACAATCTGTATTT
GATTCATCTCATCAACAATATACTGACTCAAATAACTTGCCGTCTGACTT
AAACTTTGACGACATCACTCTACGACCCATTATCAAAAGCAATACGCGCC
AAGCTGAGCATTGAATCAATCAAGCAAACGATTGACAACATCAAGCCATC
CCTGATATCTGACTTCAAGGATTTGAGTGACGCAAATCTCATTCAACTCA
AGGAGGCATCAACATCTATCAACAACACTGTCATCACTATTTCAGAGAGG
TATGAACGTTTACTTCAACAAGATATCACTGATCCAACGCTTCTCACTGA
ACTTGATAAAATCGGCATAGCCCAGAAAAAGCTTTGCGAATCTGAGACCA
AATATCAAGGAGACCTTGACAAGGAAATCATTTCCAGAGACGTCTACAAA
CAACGGACATTTGATGAATCCAAGCTCAACATCAAACTGGACAAATTCTC
GGGGTATGAAAGTTCAATGGACATCTACACATTTCAGACAGCCTTCGAGA
AGATATACAAACGAACAACTCCACATCATATGCTACCTGATCTGCTAAAG
AACAATCTGCTAAAAGGAGGTGCTTTATTCCTTGTCAAGACCCTCGAAGA
CATCAACGTCATCTGGGCCCGGCTGAAGTCTGCCTACGGAGACACCAAAC
TGTTACTTGCAAAGAAGCTGAAAACAATCATCGAAAATGAATCTCTTGGT
CGAAGACAAGACTCTGAACATCTAATCGATACTCTGAACAACCTTATCAA
TACACTAAAGGAATTGATTTCACTAGCTGAACAGCACCAAATCGAAGAAC
ATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008419XLOC_008419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015046-exon-sc0000203-1575043694:166941..168744TCONS_00015046-exon-sc0000203-1575043694:166941..168744Clytia hemisphaericaexon
TCONS_00015046-exon-sc0000203-1510915933:166941..168744TCONS_00015046-exon-sc0000203-1510915933:166941..168744Clytia hemisphaericaexon
TCONS_00015046-exon-sc0000203-1491911889:166941..168744TCONS_00015046-exon-sc0000203-1491911889:166941..168744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:166941..168744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.396453	1.31344	1.28889	0.468793	2.61274	2.40314	0.725053	0.857327	0.366034	0.320682	0	0.340048	0.327659	0.240777	0.325419	0.241364	0.274204	0.513972	0.477707	0.085393	0.459501	0	0.359689	0.144349	0.264631	0.111299	0.605076	0	0.349707	0.15179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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