TCONS_00015025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015025
Unique NameTCONS_00015025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015025 ID=TCONS_00015025|Name=TCONS_00015025|organism=Clytia hemisphaerica|type=transcript|length=1801bp
aatcaaaaacacAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGT
GGTTTATCATTCTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTT
GGTTCAAAATGATGAATTGGGATTTCAAGATGTTTTCAAAATCATTATTG
CAGCCACATTTGGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCA
GATTACCTTTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGA
TACTGAATCCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAagGAAT
GCTTGGATGGAGATGTGGACTTCCTGGATGTTCAATTCAACTACCCAACA
AGACCAGATGTTCCAGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGG
ACAGAAAGTGGCGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGG
TCGGATTGCTAGAGAGGTTTTACAATCCAAAGAAAGGCGATATTACGATA
GATGGCATGGACATTTCTGATTACAATTTAAAGTGGTTACGTTCACAAAT
CAGTATTGTCTCACAAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATA
ACATCACGTACGGGTTGACAATGGATGATGGAAAGCCaatcccgcaaaaa
ttaatcgaaGAGAGCGCCAGAAACGCAAATATTCATGATTTCATCATGAC
TTTACCGTTGGGTTACGAGACACTTGTCGGTGAGAAAGGTACCTTGATAT
CAGGAGGACAAAAGCAACGTATTGCTATCGCAAGAGCACTTATTCGTGAT
CCAAGGATTTTACTGTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAG
TGAAAAGGTGGTGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACAT
CAATCATTATAGCTCATCGCTTATCAACAATCCAAAATGCTGATATCATT
GCAGTTATACAAGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACT
ATTAACAATGAGGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAG
ACACGAACCTACAGCGTTGTAAAACCCTCCTGTGGGGGCCAAGATCTTGA
AGAAGAGAACatttatataaattttacacccttgtgtcacagaGCCACTG
GAGCTCCACTgcagaattttgcaaaaaatttcgtccccgttggaaaaata
ccctggaatttaaTCCCAtttggaaattgactttgatttcatcctcattt
gaaattcaatgtttaaaaattctatttaaaattttttaaccatgaaacaa
tagaatttctatatccccattgagatttcattAGGTTTTTATCCCAACAG
AgtaaaaaaattccaccggggctgagacaggggtgtaattcaTCAAGGAA
TCAGATGGCGCAAAATGTCAATAAAACATACAGCTAAAGtccataacgtc
caaataaaaTACATTAGTGATATTGTGAAAAAATCCGCATTACTGAATGA
TTGGAGAGAATTGTTGGAATATTAACTATCTTTAGGGGACTTCTTACAAG
AGGCCCCAAAGCGGCTTTCGTGATGACGTGGTAGGGACTTTTTTgaagcg
tgattacgtgatttagaaattttatcttcgtgattgcgtgtagactagta
aactagtcggttattacttataaccttataataaaactgtcaatcaaata
ttgtaaacactaattaaatattcagcgcgcgtgagagaaaaggaaaataa
ccgactagaagctacttccaacgcctttttttcttcacctaaaatcgtaa
g
Run BLAST on NCBI

protein sequence of TCONS_00015025-protein

>TCONS_00015025-protein ID=TCONS_00015025-protein|Name=TCONS_00015025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
SKTQAHWYGVTFGSARGLSFFANSAAFALGGYLVQNDELGFQDVFKIIIA
ATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKEC
LDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAV
GLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDN
ITYGLTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLIS
GGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTS
IIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQM
Run BLAST on NCBI

transcript from alignment at sc0000203:80377..88271+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015025 ID=TCONS_00015025|Name=TCONS_00015025|organism=Clytia hemisphaerica|type=transcript|length=7895bp|location=Sequence derived from alignment at sc0000203:80377..88271+ (Clytia hemisphaerica)
aatcaaaaacacAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGT
GGTTTATCATTCTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTT
GGTTCAAAATGATGAATTGGGATTTCAAGATGTTTTCAAGTAAGTATTCA
TATTCAGGTCAAAATCTTAAGCAAGACTTTATGAATTGGGTTATTCTGGA
AATTTCTACCCCCTTTGTTGAggtctttttttggaaaattgactccctaa
atttttttttcaatttttttgaaaaacgtgGATTTTTGACCCTGTTTTaa
tgaccaccctggattttcaaccttaTTTTACCGAAAACCCTGGATTATTA
CACTCCAAAAACTAGACCCCCAGATTTTGTTTATTTCCAAACCACCCTGG
ACGAACACACCTTTTCAACATGGGGGGTAAAGAATATTTCTGAAATAGCC
CCCTTCTAACAGCTTCTGATCAATCAAATTTACTTCGCTTCCCGATTGGC
TTCGGTTGGATTCAATAGCTAGCTAGATTTGGATTTGATTGATATTGATG
GTTTACCAATTGAAATATCTAGGAGTTTGTTCGCAAGTTAATCGCAGATT
AAAtaaatcgaatacaatcaaattaaattttatcaGACTTAGGGGCTGTT
CATAGGGAGGCGGACTGGCCCGTATAGGTCCAGTCCCTTAGATGAAGGTT
TCATTGGATGAACTCGTTCAATTCCATCCAGTCAGTTTATTGGCTGTGAT
TACTTCGACTGAATTAATTGTAAATCATAATTCGTATGGATTATTTTGTT
CGTTTCCATTGGAGCCCGGTATGAACACTAACACGTAACATTAAATGTGG
ACATTAACATAACCtgtcaaattaaaaaagatcGAAAAGTCTAACCTTAT
GTTTATTGTTGATTGTAGAATCATTATCGCAGCCACATTTGGATCCATGA
TCGCTGGTCAAGCGTTATCCTTTACACCAGATTACCTTTCAGCAAAAGTG
GCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTGAATCCAAAATCGATGT
CAATCAACCTGGTGGAAAAATCAaggttcaaaaattttacacgctttttc
tataagaatggtgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTAaagaaa
acacccccttctcacagacccggttggATTCTTTtaaccagtggggataa
aaatattggaCTGAccctcgatggggattgatataaGGTAAAGGGTAAAG
CCAATGAagaataaattctaaaaaatagaaaatgtcTTAAAAAGATCTTC
AAaatcaactttgttttgatgacagGTATCACAACAAGCTTTGATGAATA
TTCGGACAGTCGCATCACTGGGCAAAGAAGATTACTTTTATGAACGATTT
TCATGCCTTTTACAAGAGCCTTATCCGTAAGTATTTGAAGGGATGATTGA
GATTTTTGGTAACAAAGATTACCTTGGTTGGTTATATAACCATATTAATA
CAATGATATCATTGGAGTCTCCGGAGAAATCACTATTCTTTCctatataa
attatttttccatATCAGTACATATCGACTGGCTCTCATGGTGAAATCTT
TCTGCTTTCTTTTCTaaagggggggtttcagggggtacccgattccgcaa
ttccgtaaattttttcttcaatttccgtcaaaccgtcttaaattgaacca
aaattccgtcaccgaaaattcctttgaaattcaatatttttgtcgaaaaN
TTCGCAAGTTAATCGCAGATTAAAtaaatcgaatacaatcaaattaaatt
ttatcaGACTTAGGGGCTGTTCATAGGGAGGCGGACTGGCCCGTATAGGT
CCAGTCCCTTAGATGAAGGTTTCATTGGATGAACTCGTTCAATTCCATCC
AGTCAGTTTATTGGCTGTGATTACTTCGACTGAATTAATTGTAAATCATA
ATTCGTATGGATTATTTTGTTCGTTTCCATTGGAGCCCGGTATGAACACT
AACACGTAACATTAAATGTGGACATTAACATAACCtgtcaaattaaaaaa
gatcGAAAAGTCTAACCTTATGTTTATTGTTGATTGTAGAATCATTATTG
CAGCCACATTTGGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCA
GATTACCTTTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGA
TACTGAATCCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAaggttc
aaaaattttacacgcttcttctataagaatggtgttttccCATTTCATTT
TGGAGAAAACcttcctaaaatattcttatacggtattcttaggttaggaa
cTAGGCTTatgctcatcctctagcaaaAACAGTTTCTTATAgaatatagg
aagtatatctataaaGGTCTGCAGTTCAGACTAGTTAGGAACGAGATTCA
ATGAAATTTAAcatgtaatcgtcagccgtgcaaaattactcgaatctgat
tggtttagaggagtgcgattaatcgttaattgcactattaccactttttg
cactcttcgacagggggacacttttgtccccttattcttttctctcccaa
gtcctgtgtcagagacttttttttactaNgagtgcgattaatcgttaatt
gcactattaccactttttgcactcttcggcggggagacacttttgtcccc
ttattcttttgtCCCCCAAGTCCTGtatcagagactttttttactatata
ataaaaaacaaagacatttttttcttcaatataaaaaagaacaaagaaat
tttacgttacaatagcttcttttaattgaaaacaaagaaaaattacactg
caatgttttatAATGATTATTttctgacgattacctcggaatcgtatgtt
ttgtcgtgcaattaacgattaatcactcgtaacaaaggagaaaataccgt
aatttgccctttgttactcgtgattaatcgttaattgcactccaaaccat
acgattactagtactaatacaCACCTAAAGCATAAAATGGAATTTTTGTG
ACAGTATTGAAATAGGGGTAATAATTaacaatttacagttaaaatgctct
aaaaattgcATTCGCAGATTCAGTTGCCGAATTCCATGATGgtaatattc
ttagcattattcttaatttttaagaataacatcatggatattcttataaa
gtttattcttatatataaaaaagcgtgtacctatCCAACTGACTGATTat
gatttctaagaaattaGTTTTCTTTTACCACAGGGTTTAGGGAATCCTTT
AGGGTCCTTACGGAATATATTTCgctattttcaaggttttgatgaatttt
ttagaTATGATTTTTAAGGCGTTTCGTTGTTAAAGGTTCTTCAATACTCA
GCACATAGCGCAAGATAAAGTTTGCCTCAAAATAAcgaggataaaagaaa
aaacaactgCTGTAAATTTTGtgacgatttccaaaaattaaatTGCTTTA
GGAATGCTTGGATGGAGATGTGGACTTCCTGGATGTTCAATTCAACTACC
CAACAAGACCAGATGTTCCAGTGTTGCAGGGATTGTCATTGCAAATAAGA
ACTGGACAGAAAGTGGCGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAAC
AGCGGTCGGATTGCTAGAGAGGTTTTACAATCCAAAGAAAGGCGATATTG
TAAGTGTGGTTGTAATCTCGTGCCCAGTCTCAAGCTCTTTCTATATATGA
TGGTCGATTGACCCGGCTTGGATTGATTTGGAACAGGGGCTCATTGACTA
CCAAATATTACAAACTTGCTCAAcgcgaaaacaatgaaattttgaacaag
GGAATTTTGTATTTCACAGATATTAAGCTGAGTACTCACTAGATCTCACC
GAGGGTGTTTGTCAGGCTATTCTCTAACACTACAAACGCATGGTTGCGTT
TTGCATAAGTTGAAGCTTCGAAATTAAGTCTAAGCGTGGGTGGGTGGTGA
TTAACGACTAGACTTCAGGCATCTTAGAGAACTTAAGGGAATTTCtctac
acccctgtgtcagacCCTCTGGGACTCCCATCCCaaccaatttttgtccc
cggtgggaaatttACCcgaaaatttcagccccactacaAAGTCTACTTTG
ATTTCTTCActcccatttgaaattcaagggAAAAACTCAAAaccatcctc
actggatttCTGGACTTTTCAACAACAATTAGATTTCGATGaaatcccca
ctgtgggaaaaaatttcttcgggttgtgagacaggagtATGTTACTTTGC
AAACGAACATTACCCCGTAACAGTTATCGTATTATCAAATATTTTACTGT
ATAACACATATTATAAGCAATTCTAATCCCTTcttgggttggtctaaaaa
tcAGGGTTGTGGGTATAGGTATTTGGGCAAAAAAGGGtgaccccacaacc
tagcccaactgggataccctgctttttagaccaaccttCTCTACTTTTTT
CTTTGTAGACGATAGATGGCATGGACATTTCTGATTACAATTTAAAGTGG
TTACGTTCACAAATCAGTATTGTCTCACAAGAACCCGTCCTCTTTGCCAA
AAGCATCAAAGATAACATCACGTACGGGTTGACAATGGATGATGGAAAGC
CaatcccgcaaaaattaatcgaaGAGAGCGCCAGAAACGCAAATATTCAT
GATTTCATCATGACTTTACCGTTGGTAAATGTAGTTTCTATATCTTAGAA
CCTTTAACTCGAATTAttaaaactcgaaaaaattCTCCGGTCCCAACTTG
AACAAAATACACAACCCTTAACAACGGAGTAAAAAAGTTACCATACTTAG
TAGTGCTATTAGGTTCAAATTTAGTGAGGCTTTTCGAAAACTAACAAAAA
GAACACCTGGGTGGTGTGGAGACCCAGTAGCGTTTTCCCTTTTCCCGAAG
AAGAGTTTCTATTCTTGATTCAAATACCCCAAATGAAgcaatattttcaa
gatatataTTCTGGATTTGTTGCGCGCTTAGGCCCCGacaaattcaaaat
cttttcaaCCAATTTTTCGATCAATTCCTCTGCACACTGGGCTCCAACCC
AGGGACATGGAGTAGGGTTTTTTTAAGGAATCACAACTGACAAAAATCCC
TATGTTTTTTATTAGCAGTTCTTTCAAAATCTGGGCGGTGCCGTTATATA
GGTTACTGGGTGCATTTACGCACCCCGTGAATATTTGAGTTACGCCGTTG
TGTAGGTGCTTGGTGTGTTTACGCTCCCCGTACATGTTCGAGTTACAGAC
ACTCCCTTGGTTTGAAAAGAATTTCGAACATTTCAATGAGAAAGGTTTTC
AAGAGCACTTTCAAAATTTCGATTGGCATATAGTTAGAACAATCTGACAA
GAATCTGACAGTCTATTTGAAGTGACTCTTTCCAATAATTGCTTAAAGAC
CAGTTTTTTGTCAGATTCCTTAAATTTCATGTATAATTGTTGACCTCGTA
GGtcgttaaaaattttctttaatgaAAATAATGAGAAGTTTGTAAAGATC
GCAAGCCTAAATGTTGGTCCATTTTTATACTGGGAAGATAGACCTTgaca
gatatcttcagagccttaAAAAGGGATCCCGatcagcggcacgtccccgt
acccaattttgcctaagtccccccaGACTCAATTCGATATATTTGATCAC
TTACTGTATTTAATGCATAACCTAACAACTTGATATTTTTCTAGGGTTAC
GAGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGAGGACAAAAGCA
ACGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAGGATTTTACTGT
TAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAAAGGTAAGGGCT
ATAATATTTCCATTCCCAGGCTAAGATATCACTGACTTTCCGGAATTTTT
CCGCTGCTTTTACCAAGATAACCGACTAAAAAATAGTAAGGACTCGCTCC
AGATACAGAAAAAACCTTGtcaaatcagtcaatacgtcacttgcagcCAA
AGCTGTAGGGTCCGTGAAAGACAGTGCAATTTTTCAACTAAGCGGAATCC
TGGTCTTATGAGAGTGGCAGTGAAAACTTAATCCTGAAAGTGGAATCTCA
TGCCGGCTTAGCAAAAGGCGCTATATGACTGCGAGAAATTTGGTAAATTA
TTACTTCCGGAGGAGCGCACTAGGATATCAAGCGGAAAGAATGTGATGTT
AAAAGAATTAACTCTTAAAATCAAATCCTTACCTTTACAGCAAAAGATCA
ATATGATTTCATGTCATGCATTTCCCCAGAATTTCAGCATTCACAGAGTA
TATAAGCATGTTGTTAATGGTCTAACAAAAGCATTGATGGGGGCAGGGGA
AGGGAAATGCAGAAGGGAGTAGCGAGGAAAAAAAGAGAGTAGAGACTATG
TTACCGGACTAAGTAGCGTGTGAATTTCTAAAAATCCCACTTCACTTTAT
TAGAAAAAAggacttaaggccggtctccccTTTCGCGCAAAATGGTGACA
GCTTTTTTCTCAACTGTTTTCGCCTGTAGAAACGTCATTAAAAAAGTTTc
gagtgaaaaaataaaaagttgaaagaagttTAACTTTTTAAATCGTTACG
TCAGATTtgcccaatggaattgcttcatttttcaaccgaccaatgacttt
acaaaaacgttaaaaggttttcgctcatttcgcgcgaaagtggagaccgg
cctttaatgCATGTTTCCCTGATATATTTATTTACTCTCACTTTTTTTCA
GGTGGTGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATCA
TTATAGCTCATCGCTTATCAACAATCCAAAATGCTGATATCATTGCAGTT
ATACAAGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAAC
AATGAGGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAGACACGA
ACCTACAGCGTTGTAAAACCCTCCTGTGGGGGCCAAGATCTTGAAGAAGA
GAACatttatataaattttacacccttgtgtcacagaGCCACTGGAGCTC
CACTgcagaattttgcaaaaaatttcgtccccgttggaaaaataccctgg
aatttaaTCCCAtttggaaattgactttgatttcatcctcatttgaaatt
caatgtttaaaaattctatttaaaattttttaaccatgaaacaatagaat
ttctatatccccattgagatttcattAGGTTTTTATCCCAACAGAgtaaa
aaaattccaccggggctgagacaggggtgtaattcaTCAAGGAATCAGAT
GGCGCAAAATGTCAATAAAACATACAGCTAAAGtccataacgtccaaata
aaaTACATTAGTGATATTGTGAAAAAATCCGCATTACTGAATGATTGGAG
AGAATTGTTGGAATATTAACTATCTTTAGGGGACTTCTTACAAGAGGCCC
CAAAGCGGCTTTCGTGATGACGTGGTAGGGACTTTTTTgaagcgtgatta
cgtgatttagaaattttatcttcgtgattgcgtgtagactagtaaactag
tcggttattacttataaccttataataaaactgtcaatcaaatattgtaa
acactaattaaatattcagcgcgcgtgagagaaaaggaaaataaccgact
agaagctacttccaacgcctttttttcttcacctaaaatcgtaag

Coding sequence (CDS) from alignment at sc0000203:80377..88271+

>TCONS_00015025 ID=TCONS_00015025|Name=TCONS_00015025|organism=Clytia hemisphaerica|type=CDS|length=6282bp|location=Sequence derived from alignment at sc0000203:80377..88271+ (Clytia hemisphaerica)
tcaaaaacacAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGTGG
TTTATCATTCTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGG
TTCAAAATGATGAATTGGGATTTCAAGATGTTTTCAAAATCATTATTGCA
GCCACATTTGGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCAGA
TTACCTTTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATA
CTGAATCCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAagGAATGC
TTGGATGGAGATGTGGACTTCCTGGATGTTCAATTCAACTACCCAACAAG
ACCAGATGTTCCAGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGGAC
AGAAAGTGGCGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTC
GGATTGCTAGAGAGGTTTTACAATCCAAAGAAAGGCGATATTACGATAGA
TGGCATGGACATTTCTGATTACAATTTAAAGTGGTTACGTTCACAAATCA
GTATTGTCTCACAAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATAAC
ATCACGTACGGGTTGACAATGGATGATGGAAAGCCaatcccgcaaaaatt
aatcgaaGAGAGCGCCAGAAACGCAAATATTCATGATTTCATCATGACTT
TACCGTTGGGTTACGAGACACTTGTCGGTGAGAAAGGTACCTTGATATCA
GGAGGACAAAAGCAACGTATTGCTATCGCAAGAGCACTTATTCGTGATCC
AAGGATTTTACTGTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTG
AAAAGGTGGTGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCA
ATCATTATAGCTCATCGCTTATCAACAATCCAAAATGCTGATATCATTGC
AGTTATACAAGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTAT
TAACAATGAGGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAtca
aaaacacAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGTGGTTT
ATCATTCTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGGTTC
AAAATGATGAATTGGGATTTCAAGATGTTTTCAAAATCATTATTGCAGCC
ACATTTGGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCAGATTA
CCTTTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTG
AATCCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAagGAATGCTTG
GATGGAGATGTGGACTTCCTGGATGTTCAATTCAACTACCCAACAAGACC
AGATGTTCCAGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGGACAGA
AAGTGGCGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTCGGA
TTGCTAGAGAGGTTTTACAATCCAAAGAAAGGCGATATTACGATAGATGG
CATGGACATTTCTGATTACAATTTAAAGTGGTTACGTTCACAAATCAGTA
TTGTCTCACAAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATAACATC
ACGTACGGGTTGACAATGGATGATGGAAAGCCaatcccgcaaaaattaat
cgaaGAGAGCGCCAGAAACGCAAATATTCATGATTTCATCATGACTTTAC
CGTTGGGTTACGAGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGA
GGACAAAAGCAACGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAG
GATTTTACTGTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAA
AGGTGGTGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATC
ATTATAGCTCATCGCTTATCAACAATCCAAAATGCTGATATCATTGCAGT
TATACAAGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAA
CAATGAGGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAtcaaaa
acacAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGTGGTTTATC
ATTCTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGGTTCAAA
ATGATGAATTGGGATTTCAAGATGTTTTCAAAATCATTATTGCAGCCACA
TTTGGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCAGATTACCT
TTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTGAAT
CCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAagGAATGCTTGGAT
GGAGATGTGGACTTCCTGGATGTTCAATTCAACTACCCAACAAGACCAGA
TGTTCCAGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGGACAGAAAG
TGGCGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTCGGATTG
CTAGAGAGGTTTTACAATCCAAAGAAAGGCGATATTACGATAGATGGCAT
GGACATTTCTGATTACAATTTAAAGTGGTTACGTTCACAAATCAGTATTG
TCTCACAAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATAACATCACG
TACGGGTTGACAATGGATGATGGAAAGCCaatcccgcaaaaattaatcga
aGAGAGCGCCAGAAACGCAAATATTCATGATTTCATCATGACTTTACCGT
TGGGTTACGAGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGAGGA
CAAAAGCAACGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAGGAT
TTTACTGTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAAAGG
TGGTGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATCATT
ATAGCTCATCGCTTATCAACAATCCAAAATGCTGATATCATTGCAGTTAT
ACAAGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAACAA
TGAGGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAtcaaaaaca
cAAGCACACTGGTACGGTGTTACGTTTGGTTCTGCACGTGGTTTATCATT
CTTCGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGGTTCAAAATG
ATGAATTGGGATTTCAAGATGTTTTCAAAATCATTATTGCAGCCACATTT
GGATCCATGATCGCTGGTCAAGCTTTATCCTTTACACCAGATTACCTTTC
AGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTGAATCCA
AAATCGATGTCAATCAACCTGGTGGAAAAATCAagGAATGCTTGGATGGA
GATGTGGACTTCCTGGATGTTCAATTCAACTACCCAACAAGACCAGATGT
TCCAGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGGACAGAAAGTGG
CGTTGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTCGGATTGCTA
GAGAGGTTTTACAATCCAAAGAAAGGCGATATTACGATAGATGGCATGGA
CATTTCTGATTACAATTTAAAGTGGTTACGTTCACAAATCAGTATTGTCT
CACAAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATAACATCACGTAC
GGGTTGACAATGGATGATGGAAAGCCaatcccgcaaaaattaatcgaaGA
GAGCGCCAGAAACGCAAATATTCATGATTTCATCATGACTTTACCGTTGG
GTTACGAGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGAGGACAA
AAGCAACGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAGGATTTT
ACTGTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAAAGGTGG
TGCAAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATCATTATA
GCTCATCGCTTATCAACAATCCAAAATGCTGATATCATTGCAGTTATACA
AGGTGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAACAATGA
GGGGAGCATATTATGTTTTAAACTCAGCTCAGATGTAAtcaaaaacacAA
GCACACTGGTACGGTGTTACGTTTGGTTCTGCACGTGGTTTATCATTCTT
CGCCAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGGTTCAAAATGATG
AATTGGGATTTCAAGATGTTTTCAAAATCATTATTGCAGCCACATTTGGA
TCCATGATCGCTGGTCAAGCTTTATCCTTTACACCAGATTACCTTTCAGC
AAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTGAATCCAAAA
TCGATGTCAATCAACCTGGTGGAAAAATCAagGAATGCTTGGATGGAGAT
GTGGACTTCCTGGATGTTCAATTCAACTACCCAACAAGACCAGATGTTCC
AGTGTTGCAGGGATTGTCATTGCAAATAAGAACTGGACAGAAAGTGGCGT
TGGTGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTCGGATTGCTAGAG
AGGTTTTACAATCCAAAGAAAGGCGATATTACGATAGATGGCATGGACAT
TTCTGATTACAATTTAAAGTGGTTACGTTCACAAATCAGTATTGTCTCAC
AAGAACCCGTCCTCTTTGCCAAAAGCATCAAAGATAACATCACGTACGGG
TTGACAATGGATGATGGAAAGCCaatcccgcaaaaattaatcgaaGAGAG
CGCCAGAAACGCAAATATTCATGATTTCATCATGACTTTACCGTTGGGTT
ACGAGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGAGGACAAAAG
CAACGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAGGATTTTACT
GTTAGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAAAGGTGGTGC
AAGACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATCATTATAGCT
CATCGCTTATCAACAATCCAAAATGCTGATATCATTGCAGTTATACAAGG
TGGTCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAACAATGAGGG
GAGCATATTATGTTTTAAACTCAGCTCAGATGTAAtcaaaaacacAAGCA
CACTGGTACGGTGTTACGTTTGGTTCTGCACGTGGTTTATCATTCTTCGC
CAACTCCGCCGCCTTTGCATTGGGCGGTTATTTGGTTCAAAATGATGAAT
TGGGATTTCAAGATGTTTTCAAAATCATTATTGCAGCCACATTTGGATCC
ATGATCGCTGGTCAAGCTTTATCCTTTACACCAGATTACCTTTCAGCAAA
AGTGGCTGCTGGTCGTTTGTTCAAGCTCTTCGATACTGAATCCAAAATCG
ATGTCAATCAACCTGGTGGAAAAATCAagGAATGCTTGGATGGAGATGTG
GACTTCCTGGATGTTCAATTCAACTACCCAACAAGACCAGATGTTCCAGT
GTTGCAGGGATTGTCATTGCAAATAAGAACTGGACAGAAAGTGGCGTTGG
TGGGAGCCAGCGGTTGCGGCAAATCAACAGCGGTCGGATTGCTAGAGAGG
TTTTACAATCCAAAGAAAGGCGATATTACGATAGATGGCATGGACATTTC
TGATTACAATTTAAAGTGGTTACGTTCACAAATCAGTATTGTCTCACAAG
AACCCGTCCTCTTTGCCAAAAGCATCAAAGATAACATCACGTACGGGTTG
ACAATGGATGATGGAAAGCCaatcccgcaaaaattaatcgaaGAGAGCGC
CAGAAACGCAAATATTCATGATTTCATCATGACTTTACCGTTGGGTTACG
AGACACTTGTCGGTGAGAAAGGTACCTTGATATCAGGAGGACAAAAGCAA
CGTATTGCTATCGCAAGAGCACTTATTCGTGATCCAAGGATTTTACTGTT
AGATGAAGCTACGTCGGCGCTAGATTCTGAAAGTGAAAAGGTGGTGCAAG
ACGCCCTCGACCGAGCCATGGAAGGGCGTACATCAATCATTATAGCTCAT
CGCTTATCAACAATCCAAAATGCTGATATCATTGCAGTTATACAAGGTGG
TCGTGTTATTGAATGGGGTACGCATTCAGAACTATTAACAATGAGGGGAG
CATATTATGTTTTAAACTCAGCTCAGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008411XLOC_008411Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015025-proteinTCONS_00015025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015025-exon-sc0000203-1491911889:80377..80515TCONS_00015025-exon-sc0000203-1491911889:80377..80515Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:80377..80515TCONS_00015025-exon-sc0000203-1510915933:80377..80515Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:80377..80515TCONS_00015025-exon-sc0000203-1575043694:80377..80515Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1491911889:82616..82772TCONS_00015025-exon-sc0000203-1491911889:82616..82772Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:82616..82772TCONS_00015025-exon-sc0000203-1510915933:82616..82772Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:82616..82772TCONS_00015025-exon-sc0000203-1575043694:82616..82772Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1491911889:84028..84225TCONS_00015025-exon-sc0000203-1491911889:84028..84225Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:84028..84225TCONS_00015025-exon-sc0000203-1510915933:84028..84225Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:84028..84225TCONS_00015025-exon-sc0000203-1575043694:84028..84225Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1491911889:85035..85250TCONS_00015025-exon-sc0000203-1491911889:85035..85250Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:85035..85250TCONS_00015025-exon-sc0000203-1510915933:85035..85250Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:85035..85250TCONS_00015025-exon-sc0000203-1575043694:85035..85250Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1491911889:86271..86417TCONS_00015025-exon-sc0000203-1491911889:86271..86417Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:86271..86417TCONS_00015025-exon-sc0000203-1510915933:86271..86417Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:86271..86417TCONS_00015025-exon-sc0000203-1575043694:86271..86417Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1491911889:87328..88271TCONS_00015025-exon-sc0000203-1491911889:87328..88271Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1510915933:87328..88271TCONS_00015025-exon-sc0000203-1510915933:87328..88271Clytia hemisphaericaexon
TCONS_00015025-exon-sc0000203-1575043694:87328..88271TCONS_00015025-exon-sc0000203-1575043694:87328..88271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:80377..88271 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237088	0.234935	0.229093	0.327568	2.92829	1.25293	2.68077	4.273	2.97311	5.56822	24.5189	2.12286	38.112	38.7533	18.3839	28.0364	28.118	24.0921	22.7096	21.7642	32.1897	29.5837	8.51568	12.2144	15.0647	11.2176	40.1475	43.4455	3.06027	2.43112
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003439ABC_transporter-like
IPR017871ABC_transporter_CS
IPR011527ABC1_TM_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
Blast
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BLAST of TCONS_00015025 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 370.548 bits (950), Expect = 1.852e-113
Identity = 187/347 (53.89%), Postives = 244/347 (70.32%), Query Frame = 3 
Query:    3 SKTQAHWYGVTFGSARXXXXXXXXXXXXXXXYLVQNDELGFQDVFKIIIAATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKECLDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAVGLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDNITYGLTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLISGGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTSIIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQ 1043
            S  +AH +G+TF   + + +F+ +  F  G YLV +  + F+DV  +  A  FG+M  GQ  SF PDY  AK++A  +  + +    ID     G +   L+G+V F +V FNYPTRPD+PVLQGLSL+++ GQ +ALVG+SGCGKST V LLERFY+P  G + +DG +I   N++WLR+ + IVSQEP+LF  SI +NI YG   D+ + + Q+ I  +A+ ANIH FI +LP  Y T VG+KGT +SGGQKQRIAIARAL+R P ILLLDEATSALD+ESEKVVQ+ALD+A EGRT I+IAHRLSTIQNAD+I V Q GRV E GTH +LL  +G Y+ + S Q
Sbjct:  931 SLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYG---DNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274

HSP 2 Score: 307.375 bits (786), Expect = 5.884e-91
Identity = 159/346 (45.95%), Postives = 225/346 (65.03%), Query Frame = 3 
Query:   15 AHWYGVTFGSARXXXXXXXXXXXXXXXYLVQNDELGFQDVFKIIIAATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKECLDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAVGLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDNITYG---LTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLISGGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTSIIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQ 1043
            A WYG T                     LV + E     V  +  +   G+   GQA      + +A+ AA  +FK+ D +  ID     G   + + G+++F +V F+YP+R +V +L+GL+L++++GQ VALVG SGCGKST V L++R Y+P +G +++DG DI   N+++LR  I +VSQEPVLFA +I +NI YG   +TMD+        IE++ + AN +DFIM LP  ++TLVGE+G  +SGGQKQRIAIARAL+R+P+ILLLDEATSALD+ESE VVQ ALD+A +GRT+I+IAHRLST++NAD+IA    G ++E G H EL+  +G Y+ L + Q
Sbjct:  313 AFWYGTT---------------------LVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRENVTMDE--------IEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQ 629
The following BLAST results are available for this feature:
BLAST of TCONS_00015025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDR11.852e-11353.89Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
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