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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015012 ID=TCONS_00015012|Name=TCONS_00015012|organism=Clytia hemisphaerica|type=transcript|length=1616bp
GGCAATCAGAAATTGCAAATTTGACTATTTCTTCAAAACTGATGATGATG
TCTTTGTAAGTATTCCAAAcacttataattttttttacaaagacTCTTTT
GCTGTTGAGCACAAGACTTCTTTATATGCTGGTTTAATGCATATGCGAAG
TGGTCCGAATCgaaacaaAAATTCTAAATGGTATATTGACAAAAAGAGAT
GGGGACAAACAGTATATGCTCCATTTGCTACTGGGATGGCTATCATATTA
TCGAGAAATGTTGCTGAGCGTATTGAAGCATTTTTCGAAtggaaaaatgt
tttcccaCTTGAAGATGTCAATATTGGCTTCtatgtttttgttgcaaaag
tACCAAATATTGGAGTGAGGCCATCCAAAGGAAAAGAATTTGTATTGGAT
TACACTGTGGCAATTTGTAATCGTTAAAGGGAAAGCTATCACTATGCACC
CTGTGAAGACTGAAGCTTGCATGAAAAAGTTAATGCAGGAAAGCTTAAAG
TATAAGGTGGCccgtcaaaaaaataaaatgactcTCTTCTTATTAAGTAG
ATCGCGTACCGTCTTAAATTACACGCCACTTGATTGTAAGCCAAAATGGG
ACCAAGAGATGGGGCATTGTTACGTTTACCTTTTACTGTCAATTCAccta
agattttcaaaataagaatTCTTAAGATTTCAGGAATGTTTTCGCTAGTT
GCTATTTTCTGGACAAATTAGCTGGTTAAAGTAGAAGGTTACATCCAGAG
ATACAATGGATAGCACGGTCCTTGCTAAttttaagttcatttttcaaaca
GCCGGagctttttgtctttttccaCTTGGGAGTAGTCAGTGGAAAAACTA
ATTTATCAAACATGCGTTCTTACATGAGAAAATTCTGTACTGACGATATC
TACTTTAaattaaaactttgaatttgaGATCTGGCGTAGAGTTTAGCATC
TTTCTTTTTATATTCACAGTGGGTCTCGAGCCCGGCTGTGGTTCAGATTT
GGGAGGTTGAATTTACAAATTCATTATCAAATTCGTTagctttattttat
attttaactttttaatatcatattttgtgattttttgtcactttttagtT
CAGAGAAACAAATTAGCCAAATTGAACATTACAATTGTGACAACAATTGA
ACAAAAAACCTGGCCAGGAAACGCAAgcaaaaaggttgattttttatcac
gtgatcaaaacgaATTGGCAGCAATCTACAGTCTTTTTGCTGGGTGACAT
CACAAAAGCCACTTCACTGCAGTGGCTTCCAAAAATTATTGACCAATCTC
TAACGTCAATTTTGATCATGCATGTGACCAAAACGAATGGGTTTATTATC
AGACAGAGAAAGTTTTATCATACTAAATGATAAGTCAGCTTTGGTCATGT
CACCTTCTTTAGTTTTAGACGTTGTTGCTGGGCACAGAGGACTTGgccaa
acaaaaatatcttggTTGGACATATAGGTCGTCCCCGAAAATATAATGCG
TTGTTGTACATAAAGGGCTTAGCCTAATTTGGGTCTTTATTTTAGAATTT
CTGGTATCGAGATTTAATTGACATACATGCTAGAGTCGCCGAGCAGAAAT
TGTGGAGACATCGGAG Run BLAST on NCBI protein sequence of TCONS_00015012-protein >TCONS_00015012-protein ID=TCONS_00015012-protein|Name=TCONS_00015012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
AIRNCKFDYFFKTDDDVFVSIPNTYNFFYKDSFAVEHKTSLYAGLMHMRS
GPNRNKNSKWYIDKKRWGQTVYAPFATGMAIILSRNVAERIEAFFEWKNV
FPLEDVNIGFYVFVAKVPNIGVRPSKGKEFVLDYTVAICNR Run BLAST on NCBI transcript from alignment at sc0000201:448773..450388 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015012 ID=TCONS_00015012|Name=TCONS_00015012|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at sc0000201:448773..450388 (Clytia hemisphaerica)
CTCCGATGTCTCCACAATTTCTGCTCGGCGACTCTAGCATGTATGTCAAT
TAAATCTCGATACCAGAAATTCTAAAATAAAGACCCAAATTAGGCTAAGC
CCTTTATGTACAACAACGCATTATATTTTCGGGGACGACCTATATGTCCA
AccaagatatttttgtttggcCAAGTCCTCTGTGCCCAGCAACAACGTCT
AAAACTAAAGAAGGTGACATGACCAAAGCTGACTTATCATTTAGTATGAT
AAAACTTTCTCTGTCTGATAATAAACCCATTCGTTTTGGTCACATGCATG
ATCAAAATTGACGTTAGAGATTGGTCAATAATTTTTGGAAGCCACTGCAG
TGAAGTGGCTTTTGTGATGTCACCCAGCAAAAAGACTGTAGATTGCTGCC
AATtcgttttgatcacgtgataaaaaatcaacctttttgcTTGCGTTTCC
TGGCCAGGTTTTTTGTTCAATTGTTGTCACAATTGTAATGTTCAATTTGG
CTAATTTGTTTCTCTGAactaaaaagtgacaaaaaatcacaaaatatgat
attaaaaagttaaaatataaaataaagctAACGAATTTGATAATGAATTT
GTAAATTCAACCTCCCAAATCTGAACCACAGCCGGGCTCGAGACCCACTG
TGAATATAAAAAGAAAGATGCTAAACTCTACGCCAGATCtcaaattcaaa
gttttaattTAAAGTAGATATCGTCAGTACAGAATTTTCTCATGTAAGAA
CGCATGTTTGATAAATTAGTTTTTCCACTGACTACTCCCAAGtggaaaaa
gacaaaaagctCCGGCtgtttgaaaaatgaacttaaaaTTAGCAAGGACC
GTGCTATCCATTGTATCTCTGGATGTAACCTTCTACTTTAACCAGCTAAT
TTGTCCAGAAAATAGCAACTAGCGAAAACATTCCTGAAATCTTAAGAatt
cttattttgaaaatcttaggTGAATTGACAGTAAAAGGTAAACGTAACAA
TGCCCCATCTCTTGGTCCCATTTTGGCTTACAATCAAGTGGCGTGTAATT
TAAGACGGTACGCGATCTACTTAATAAGAAGAgagtcattttattttttt
gacggGCCACCTTATACTTTAAGCTTTCCTGCATTAACTTTTTCATGCAA
GCTTCAGTCTTCACAGGGTGCATAGTGATAGCTTTCCCTTTAACGATTAC
AAATTGCCACAGTGTAATCCAATACAAATTCTTTTCCTTTGGATGGCCTC
ACTCCAATATTTGGTacttttgcaacaaaaacataGAAGCCAATATTGAC
ATCTTCAAGtgggaaaacatttttccaTTCGAAAAATGCTTCAATACGCT
CAGCAACATTTCTCGATAATATGATAGCCATCCCAGTAGCAAATGGAGCA
TATACTGTTTGTCCCCATCTCTTTTTGTCAATATACCATTTAGAATTTtt
gtttcGATTCGGACCACTTCGCATATGCATTAAACCAGCATATAAAGAAG
TCTTGTGCTCAACAGCAAAAGAgtctttgtaaaaaaaattataagtgTTT
GGAATACTTACAAAGACATCATCATCAGTTTTGAAGAAATAGTCAAATTT
GCAATTTCTGATTGCC Coding sequence (CDS) from alignment at sc0000201:448773..450388 >TCONS_00015012 ID=TCONS_00015012|Name=TCONS_00015012|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000201:448773..450388 (Clytia hemisphaerica)
TTAACGATTACAAATTGCCACAGTGTAATCCAATACAAATTCTTTTCCTT
TGGATGGCCTCACTCCAATATTTGGTacttttgcaacaaaaacataGAAG
CCAATATTGACATCTTCAAGtgggaaaacatttttccaTTCGAAAAATGC
TTCAATACGCTCAGCAACATTTCTCGATAATATGATAGCCATCCCAGTAG
CAAATGGAGCATATACTGTTTGTCCCCATCTCTTTTTGTCAATATACCAT
TTAGAATTTttgtttcGATTCGGACCACTTCGCATATGCATTAAACCAGC
ATATAAAGAAGTCTTGTGCTCAACAGCAAAAGAgtctttgtaaaaaaaat
tataagtgTTTGGAATACTTACAAAGACATCATCATCAGTTTTGAAGAAA
TAGTCAAATTTGCAATTTCTGATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015012-exon-sc0000201-1491911889:448773..450388 | TCONS_00015012-exon-sc0000201-1491911889:448773..450388 | Clytia hemisphaerica | exon |
| TCONS_00015012-exon-sc0000201-1510915933:448773..450388 | TCONS_00015012-exon-sc0000201-1510915933:448773..450388 | Clytia hemisphaerica | exon |
| TCONS_00015012-exon-sc0000201-1575043694:448773..450388 | TCONS_00015012-exon-sc0000201-1575043694:448773..450388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:448773..450388 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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