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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014995 ID=TCONS_00014995|Name=TCONS_00014995|organism=Clytia hemisphaerica|type=transcript|length=908bp
AGCAAATAAAATGCTGACCAATAAAGGCTTCAAATTAATCGGAAAGATTT
AATTAAGTAGCAAACACGGTGCTTTGTGACTGAAGGTCCATTTCCTCATG
ATGGCCATTTTCTTTCTTAACGTTCAATAAGTTGGACGTCTCTCCCCCAT
GGGATCTTTCTTTGCTGTCCGTGCGACAACTGATGTAATACACAATGTAA
ACGAAAGCGATGAGGAGCGCTTCAGAGACACAGATGAGCACCACAATGTC
CAACGATAATGTGATAGTATCACTGATGCACGTCACTTGAGGCGAGTTGG
CAATCAAGTTCATGCAACGACAGTTATCTAAGTCTAATGTCAAGTTCAAC
TGTCTGCATCGTTGGAAATATTTGTCTTTACATTTGCAACCACAAGCCTC
TTTCCTCCACTCTTTACGTCGGTGACACTGTTGTGGCTCTTCAAGGCACT
CGCAATTACAGCGGTGTTGGCTCCATACTTTGGGTGCACAACAAGTATCT
TTCTTCGGTTCGCCACGTGTTTTACATTCACACCGGCAACGTTTTTGATT
CCATTTCTGGTATTTGTTGCAGCTTGAGGAATCTGTAGTACAACGACTTG
TACACGATGTGTGGTTCAACACTTTGATGGTCTCATAACGAAACGTGTGT
AGATTCTGCGTCACTATTTCTACTTCGGAGATATTACTTGGTACACACGC
CTTAATGGAGGGTTTATCGACCCCTACGGAGCCTTGACAACGATGCAGTC
GAACGATGAACGGGAGATAGCGTGCGTGACCAGGGTCTGTTTCTACATAA
TCGATGTAAGTGGCACAGTGTACATTCTCCAACCAAATTGCAGTCCCTGA
GCATCGCTCCATCACCAATTGGAGAAGAAAAACGCATGACAAAAATTTGT
TAAATCGA Run BLAST on NCBI protein sequence of TCONS_00014995-protein >TCONS_00014995-protein ID=TCONS_00014995-protein|Name=TCONS_00014995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
RFNKFLSCVFLLQLVMERCSGTAIWLENVHCATYIDYVETDPGHARYLPF
IVRLHRCQGSVGVDKPSIKACVPSNISEVEIVTQNLHTFRYETIKVLNHT
SCTSRCTTDSSSCNKYQKWNQKRCRCECKTRGEPKKDTCCAPKVWSQHRC
NCECLEEPQQCHRRKEWRKEACGCKCKDKYFQRCRQLNLTLDLDNCRCMN
LIANSPQVTCISDTITLSLDIVVLICVSEALLIAFVYIVYYISCRTDSKE
RSHGGETSNLLNVKKENGHHEEMDLQSQSTVFAT Run BLAST on NCBI transcript from alignment at sc0000201:249008..249915 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014995 ID=TCONS_00014995|Name=TCONS_00014995|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0000201:249008..249915 (Clytia hemisphaerica)
TCGATTTAACAAATTTTTGTCATGCGTTTTTCTTCTCCAATTGGTGATGG
AGCGATGCTCAGGGACTGCAATTTGGTTGGAGAATGTACACTGTGCCACT
TACATCGATTATGTAGAAACAGACCCTGGTCACGCACGCTATCTCCCGTT
CATCGTTCGACTGCATCGTTGTCAAGGCTCCGTAGGGGTCGATAAACCCT
CCATTAAGGCGTGTGTACCAAGTAATATCTCCGAAGTAGAAATAGTGACG
CAGAATCTACACACGTTTCGTTATGAGACCATCAAAGTGTTGAACCACAC
ATCGTGTACAAGTCGTTGTACTACAGATTCCTCAAGCTGCAACAAATACC
AGAAATGGAATCAAAAACGTTGCCGGTGTGAATGTAAAACACGTGGCGAA
CCGAAGAAAGATACTTGTTGTGCACCCAAAGTATGGAGCCAACACCGCTG
TAATTGCGAGTGCCTTGAAGAGCCACAACAGTGTCACCGACGTAAAGAGT
GGAGGAAAGAGGCTTGTGGTTGCAAATGTAAAGACAAATATTTCCAACGA
TGCAGACAGTTGAACTTGACATTAGACTTAGATAACTGTCGTTGCATGAA
CTTGATTGCCAACTCGCCTCAAGTGACGTGCATCAGTGATACTATCACAT
TATCGTTGGACATTGTGGTGCTCATCTGTGTCTCTGAAGCGCTCCTCATC
GCTTTCGTTTACATTGTGTATTACATCAGTTGTCGCACGGACAGCAAAGA
AAGATCCCATGGGGGAGAGACGTCCAACTTATTGAACGTTAAGAAAGAAA
ATGGCCATCATGAGGAAATGGACCTTCAGTCACAAAGCACCGTGTTTGCT
ACTTAATTAAATCTTTCCGATTAATTTGAAGCCTTTATTGGTCAGCATTT
TATTTGCT Coding sequence (CDS) from alignment at sc0000201:249008..249915 >TCONS_00014995 ID=TCONS_00014995|Name=TCONS_00014995|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0000201:249008..249915 (Clytia hemisphaerica)
CGATTTAACAAATTTTTGTCATGCGTTTTTCTTCTCCAATTGGTGATGGA
GCGATGCTCAGGGACTGCAATTTGGTTGGAGAATGTACACTGTGCCACTT
ACATCGATTATGTAGAAACAGACCCTGGTCACGCACGCTATCTCCCGTTC
ATCGTTCGACTGCATCGTTGTCAAGGCTCCGTAGGGGTCGATAAACCCTC
CATTAAGGCGTGTGTACCAAGTAATATCTCCGAAGTAGAAATAGTGACGC
AGAATCTACACACGTTTCGTTATGAGACCATCAAAGTGTTGAACCACACA
TCGTGTACAAGTCGTTGTACTACAGATTCCTCAAGCTGCAACAAATACCA
GAAATGGAATCAAAAACGTTGCCGGTGTGAATGTAAAACACGTGGCGAAC
CGAAGAAAGATACTTGTTGTGCACCCAAAGTATGGAGCCAACACCGCTGT
AATTGCGAGTGCCTTGAAGAGCCACAACAGTGTCACCGACGTAAAGAGTG
GAGGAAAGAGGCTTGTGGTTGCAAATGTAAAGACAAATATTTCCAACGAT
GCAGACAGTTGAACTTGACATTAGACTTAGATAACTGTCGTTGCATGAAC
TTGATTGCCAACTCGCCTCAAGTGACGTGCATCAGTGATACTATCACATT
ATCGTTGGACATTGTGGTGCTCATCTGTGTCTCTGAAGCGCTCCTCATCG
CTTTCGTTTACATTGTGTATTACATCAGTTGTCGCACGGACAGCAAAGAA
AGATCCCATGGGGGAGAGACGTCCAACTTATTGAACGTTAAGAAAGAAAA
TGGCCATCATGAGGAAATGGACCTTCAGTCACAAAGCACCGTGTTTGCTA
CTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014995-exon-sc0000201-1491911889:249008..249915 | TCONS_00014995-exon-sc0000201-1491911889:249008..249915 | Clytia hemisphaerica | exon |
| TCONS_00014995-exon-sc0000201-1510915933:249008..249915 | TCONS_00014995-exon-sc0000201-1510915933:249008..249915 | Clytia hemisphaerica | exon |
| TCONS_00014995-exon-sc0000201-1575043694:249008..249915 | TCONS_00014995-exon-sc0000201-1575043694:249008..249915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:249008..249915 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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