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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014972 ID=TCONS_00014972|Name=TCONS_00014972|organism=Clytia hemisphaerica|type=transcript|length=2228bpRun BLAST on NCBI transcript from alignment at sc0000201:300165..308247- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014972 ID=TCONS_00014972|Name=TCONS_00014972|organism=Clytia hemisphaerica|type=transcript|length=8083bp|location=Sequence derived from alignment at sc0000201:300165..308247- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014972 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 1.881e-47 Identity = 95/210 (45.24%), Postives = 125/210 (59.52%), Query Frame = 3
Query: 834 CGSGTESRSRDCDNPTPLPGGS-CNGPSTESQSCNDAPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNTHPCPIHGNWSQWSNWTECDQPCGFGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 1460
CG G + RSR C+ P P GG C G E ++C + PCPVDG W W+ W CT SC G +R+R+C++PS HGG C G+A + CN PCP+HG W+ W W +C+ +CG G + R R C NPPP GG C G +Q CN CPIHG W+ W++W+ C CG G + R+R C++P PQ+GG C D + FCN PC
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 181.03 bits (458), Expect = 8.999e-47 Identity = 102/215 (47.44%), Postives = 130/215 (60.47%), Query Frame = 3
Query: 831 ACGSGTESRSRDCDNPTPLPGGS-CNGPSTESQSCNDAPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNTHPCPIHGNWSQWSNWTECDQPCGFGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPCTDMC 1472
+CG G ++R+R C+NP+ GG C G + E CN PCPV G W +W W TC+ESC GT +R+R C++P P GGS C G+ + Q CN CPIHG W W SW +C+++CGGG RTR C++P PQ+GG C G + CN+ PCP HGNWS WS W C + C G R RTC NPPP +GG C D++ CN TDMC
Sbjct: 4601 SCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN----TDMC 4811 HSP 3 Score: 172.555 bits (436), Expect = 4.610e-44 Identity = 95/211 (45.02%), Postives = 126/211 (59.72%), Query Frame = 3
Query: 831 ACGSGTESRSRDCDNPTPLPGGS-CNGPSTESQSCNDAPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNTHPCPIHGNWSQWSNWTECDQPCGFGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 1460
+CG GT++R+R C+NP P GGS C+G T+ Q CN+ CP+ G+W +W SW+ C+ SC GG R+R C P P +GG +C GS S CN+ PCP HG W+ W W +C+ TC GG+ R RTC NPPP +GG C G IQ CNT CP+ G+W W +W++C CG G + R R C +P P GG C + + CN C
Sbjct: 4658 SCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 140.969 bits (354), Expect = 4.598e-34 Identity = 75/170 (44.12%), Postives = 98/170 (57.65%), Query Frame = 3
Query: 951 VDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNTHPCPIHGNWSQWSNWTECDQPCGFGFQNRSRTCTNPPPQHGGDNCTDHDAERSFCNEHPC 1460
V G + W++W C+ +C G RSR C+ P P +GG C GS + ++C PCP+ G W+ W W+ C +CG G + RTRTC NP QHGG PC G+ ++I CN PCP+HG WS W W C + CG G Q R+R C NPPP GG C + + CNE C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 5 Score: 115.546 bits (288), Expect = 4.689e-26 Identity = 70/156 (44.87%), Postives = 86/156 (55.13%), Query Frame = 3
Query: 828 TACGSGTESRSRDCDNPTPLPGG-SCNGPSTESQSCNDAPCPVDGQWGSWTSWNTCTESCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTHPCPIHGVWTGWGSWQSCNITCGGGEENRTRTCTNPPPQHGGDPCSGDPIDIQSCNTHPCP 1292
+CG G R+R C +P P GG C G +S CN PCP G W W+ W TC+ +C GG R R+CD+P P +GG C G S Q CNT CP+ G W W SW C+ +CGGGE+ R R C +P P GG PC GD + CN CP
Sbjct: 4714 VSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00014972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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