TCONS_00014961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014961
Unique NameTCONS_00014961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014961 ID=TCONS_00014961|Name=TCONS_00014961|organism=Clytia hemisphaerica|type=transcript|length=630bp
acaaatagcagtgtagagtcttctctaatccgagttttctacgcttgtca
aacttagcgcgagactttttgtatcgaaggtggataggttttccagccgt
ggcgttcaaattttagaaaccttaacatatgttactgggctagcgttaca
gacatttttcataaactcatttagtagtTGGAAATAAACCAATCAAAAGA
TGCAGTATCTGGTATAACAGTTGATTTTTGCTCATATGTTAGGCCTTGCA
AATTATCTTTATTATTAGATTGGAACTGGGAATGTCTTCTGATTGTAGTC
CTAGTTTAAGTTACGTCAAGCAAAAGGTCttaccaaatagaaaatttagg
CAGTAAAACACAAaGTCACAAACAGAGAATGAATCAAATAGCGAAACAGt
cATACATTCTGATGACAAAACACGCTGACGTGTTGGTTTATCCAGGAAGA
AAACAGAGGAAATGCATTGTTCGATCTATTGATGATCAAATGgctttata
atttataattttacatatttttaattgtatgtatttcaaagattgtttgt
aagaccatgttcagacgttacggttccgtattGTTCCGAAAAGAAACGGT
TCTGTGTGAACGTGTGAACGCCAAAATTTG
Run BLAST on NCBI

transcript from alignment at sc0000201:167919..173290-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014961 ID=TCONS_00014961|Name=TCONS_00014961|organism=Clytia hemisphaerica|type=transcript|length=5372bp|location=Sequence derived from alignment at sc0000201:167919..173290- (Clytia hemisphaerica)
ACAAATAGCAGTGTAGAGTCTTCTCTAATCCGAGTTTTCTACGCTTGTCA
AACTTAGCGCGAGACTTTTTGTATCGAAGGTGGATAGGTTTTCCAGCCGT
GGCGTTCAAATTTTAGAAACCTTAACATATGTTACTGGGCTAGCGTTACA
GACATTTTTCATAAACTCATTTAGTAGTTGGAAATAAACCAATCAAAAGA
TGCAGTATCTGGTATAACAGTTGATTTTTGCTCATATGTTAGGCCTTGCA
AATTATCTTTATTATTAGATTGGAACTGGGAATGTCTTCTGATTGTAGTC
CTAGTTTAAGTTACGTCAAGCAAAAGGTCTTACCAAATAGAAAATTTAGG
CAGTAAAACACAAGTAAGATTTCATCCTTATGACAATGATTTTGGATGTG
ACAAAACTTGCCTCTGCTGCAAATTTCAAAGAGCATTAATGTCAAAGATT
ATTGATGTCGACCAACTATTTAAAGAAAATCTTTGTTCCCTTGAGCAAAC
AATTTTTTACAATAGAGAGAGCGGTAAGAGAGGATGCAGATTCATGGGCC
ATTTTGAGTGGGGGGGGAAAAGATTTTGGAAAATATATCGCCCACCATGG
TTGGGCGCCAAGAAAAGTTTTCACTTTTTACACCCTCAAAACACCTTAAA
ACGTTATCTAATTAGGGAGAATAATAGTTTTTATGGTTTTATTTGGTCTG
TTAAAAGTTGTTCTAATGTACATAAGTTTCAATTTAGCATGGTCTGAAAA
CAAATGGGCATGAAATTGTGAGCACGAAAACGGGAAAGAAGATATTATTA
GATAAAGAAAATTATTATATTATCAATAAAACCAAAGACATAACATAAAT
GAAAATTCAATCAACAATTTCCAAATTTTAGTCCCCCCTTTGTTCTTGTT
TTAATAGATTCTTGCAGCCCTTGATAAAGGATCCCCCTTATTTTAAAAAA
ATTACTTGTAAAAATCCCCCCTTTTTTAAAAGGCAATTTTTTTGCTCCCC
CCTTATTTTAAGGGGGGCAGAAACCATGTCGACTTATACCTTGACGCAGA
ATTTTTTATTTATATTCCGAGGGTGTATTGGCGACCGCCCACGGGCCGTT
CTCGCGTGCCATCCTATATGTATCCCATCGGATGGGACAAGCTGGAGCTT
TTATATACAGGCTCTTTGGTCGTTAATTTGTAAAAAAAAAAGATTTTAAT
TTCTATTATTTTCTTTAAAGAAAAGTGTCATTTCTATTATTTCAAATGAG
CAATAATGAGTGAAGCATACGGTGCCTGTGTTTTGATTAAAGGGGGGGGT
TTCAGGGGGTACCCGATTCCGCAATTCCACTAATATTTTCTCCAATTTCC
GTCAAACCGCCTTAAAAATTGAACCAAAATTCCGTCACTGAAAATTCCTT
TGAAATTCAATATTTTTGTCGAAAATTCCGCAAATTTTGAATATCTTTTA
CCAATTCCGAAATTCCGCAAATTTTTTTTGCTAAATTCCCTTTTTCCGCA
CTAAAATTGTCTAATTTTCCGTCTCCGTCAGAGAATCCAATCTCCGTAAT
TCCGTCAAAATTTTCGCCAAATTCCGCCACTCCGTACGAAAAAAGGGCCG
ATTCCGCTCCTCCGCCAACCATGAAAGGGCCAAATTGAAAAGTCCCGTTT
CTGTCACGGAAGGAAATCAGAGCCTTTTTTGGTCTATTTTTGAAAAATGG
TAAACTTAATGAAAATAGTATTAGTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTCATAA
AAGTTTTTCCTCGTTGAATAATTGAACTTTGAAGGTTCCGTCACGGAAGG
AATGCAGCAAAGACATTAAAAAAGACCAAAGTATGCTGATTCAGATTCCT
GTGAATTTGAAGAGAATTTTAAAACCAAAATACCACCAGAAGAAACTTAT
GTCTATCTGCTTGTCATTGAAAAAAGAACTGAGTCAAAAAAATTAATTTC
GATGGCTACAGGCCTTTGCAACTGAGAAAGGTCAGTGTCACGGAAGGACA
CCGTCACGGAAGGAAAAAATTCCTATTTTTCAAAATCAGCAATAGCGTAT
NACACCGTCACGGAAGGAAAAAATTCCTATTTTTCAAAATCAACAATAGC
GTATGAAATGTTGACTGAAACTACTGGAGTGACACATCATATCATGAATC
ATACCCATTTTTACTATTCAGTTCATTTCAAAACCTTGGAACTGTCTTTT
TATTGTTCAACCATAATGGTGATGATAATTAGGAAATTTTACAGGAAAGA
TTATATTTTTTAAGCAAAAAACGTAAAAACGCGACCTTGAAAGCGAGTAA
GCTACTTCCAAAGGCTCTAATTAGCATATTTCCATGGTGCTGAAGCGATC
TAGAGTGTTTAGAACCGGCTGGGAACAGTAGTTTTGCCGGAAAACCGGTT
TTTAGGCCTCCAGAGCCGCCTGGGCTTAAGCTGTAAGCTTACAGCTTTGT
AACTGGACCCTTAGTTAAGCTTATTCTAAGCTCCATACAGGGCTGAGCTG
GTTCCTAATGGTCATAAACCTCGTAGGACACTCCTCTGCAATGGATTAGA
CCCATTGAAGTCCAGCGAAGTGGGCAGAACCGACGAATCTTCACTAAAAT
AGCTTAACAACGCTTTAAAAAAGCTCTATTTCAGCGTTTTTGAGGCTTTT
TTAAGCAAAAAGCGTAAAAACGCGACCTTGCAATCAAGTGAGCTACTTCC
AAAGGCTCTAATTAGCATATTTCCATGGTGTTGAAGCGATTTCGAGGGTT
TGGAACTGGCTGGGAACAGTAGTTTTGCCAGAAAACCGGTTTTTAGGCCT
CCAGAGCCGCTGTAAGCTTACAGCGCTGTACTGGAGCCTTAGTTAAGCTT
ATTCTGAGCTCCATACAGGGCTGAGCTGGTTCCCAATGGTTCTAAACCTC
GTAGGACACTCTCCTGAAATAGATTAGACTCATTGAAGTCCAAGATTTCT
AAAAATAACAAGGTATTTTGAATCCGTCACGGAAGGACAAGGTGAAAGTG
TTACGGAAGGACAATAATTTCAGACCTTGTAAGTGAATGTGAAGGAGGTT
GCTTTGGAATCCAATTTCATTTTTTGTTAGGGGGTACCAATAGTTAGAAC
TTGCAATAATATCAAGAATAGTGTACTTGCACAAAACTGGTGAAAAAACT
TTTTGTCTTGAAATTGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCGACAGTCGGGTGCTTAAATTCTTAACTTAG
TGAGAACACCCGACGATCAACACCCGACACCACCTTATTTATATTTGGCG
GCTTTAACGCCCGATACTGTTTACCGCCATCTTCGCCGATGCCGTGGTGG
GCGTCAGTCAAATTATATGTACCTCATCGGCCCTTATAGGCGCTATTTTT
TCGTCACTGCTGGCGTAAAAAGGCCGGCGTAAATCGGATCAGCGATCGGA
ACTATCTGGGTTTTTTTAGGAGTTGGGTTGACTTTAGCAGACGATTTATG
ATTCTGATGGAGCTCTCTTATCCATGAAGCAATTGTATCGCGTCCATCAA
AGTAAAGTTAAATAGTGCGAATGCATGTGACTCTGGGAACTAGTTTGGGC
GCAACTTCGTCCCGTGTACCCTAGGTTTTTTTACGTTACTGATCGATAGA
AACGCCATTTACCTGACATTAACCCTTTACCCTCGGGAGCCAACCTCTCA
TGTCAACTAAATATCTATCATCATTCTTTTTATTTAGAGTCACAAACAGA
GAATGAATCAAATAGCNAACCCTTTACCCTCGGGAGCCAACCTCTCATGT
CAACTAAATATCTATCATTATTCTTTTTATTTAGAGTCACAAACAGAGAA
TGAATCAAATAGCGAAACAGGTAATCAATTAGATATTTACATTTTAGTGT
GGTGAACTGTAATTAGCCGTTATCGTAAAAGATTTGGCGTGTCTTTCTTT
CGATTCTGTACTTTGATCATATCAATGTTTCGATATTCTTAAATTCCAGC
CTGCACTCGATGGTCAATCTATTTCTCCGTGTTTAGGTTTGAGGCATGAC
ATTCCGCTCGCTTTTTTCTCTTTTCTTTTTTTCGTTTTAGTCATACATTC
TGATGACAAAACACGCTGACGTGTTGGTTTATCCAGGTAAGACGTATATT
ACCTTTAATATCATAATATAAATGGCTCAATCTCATCTGATATTTAGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTCGGGCTTTTATAATCTCAGACATAA
TGGATACTAAAGCTGTGGATAGACAAGAGATTTAAAATAGAGGGCGGTAG
TCTATTAGTTAATCTTTCTACTTTCTATTTCCTTCAGGAAGAAAACAGAG
GAAATGCATTGTTCGATCTATTGATGATCAAATGGCTTTATAATTTATAA
TTTTACATATTTTTAATTGTATGTATTTCAAAGATTGTTTGTAAGACCAT
GTTCAGACGTTACGGTTCCGTATTGTTCCGAAAAGAAACGGTTCTGTGTG
AACGTGTGAACGCCAAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008364XLOC_008364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014961-exon-sc0000201-1575043694:172928..173290TCONS_00014961-exon-sc0000201-1575043694:172928..173290Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1575043694:168821..168856TCONS_00014961-exon-sc0000201-1575043694:168821..168856Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1575043694:168555..168600TCONS_00014961-exon-sc0000201-1575043694:168555..168600Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1575043694:167919..168103TCONS_00014961-exon-sc0000201-1575043694:167919..168103Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1510915933:172928..173290TCONS_00014961-exon-sc0000201-1510915933:172928..173290Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1510915933:168821..168856TCONS_00014961-exon-sc0000201-1510915933:168821..168856Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1510915933:168555..168600TCONS_00014961-exon-sc0000201-1510915933:168555..168600Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1510915933:167919..168103TCONS_00014961-exon-sc0000201-1510915933:167919..168103Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1491911889:172928..173290TCONS_00014961-exon-sc0000201-1491911889:172928..173290Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1491911889:168821..168856TCONS_00014961-exon-sc0000201-1491911889:168821..168856Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1491911889:168555..168600TCONS_00014961-exon-sc0000201-1491911889:168555..168600Clytia hemisphaericaexon
TCONS_00014961-exon-sc0000201-1491911889:167919..168103TCONS_00014961-exon-sc0000201-1491911889:167919..168103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:167919..173290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79904	0.678609	1.58294	1.55421	0.35215	0.662148	0.487634	0.654679	1.108	1.07972	0.864248	0.880023	1.03824	0.655326	0.31925	0.208793	0	0.532699	1.43098	0.83986	0.401392	0.750703	0	0.348285	1.26878	1.36787	0.776152	0.684581	1.45404	1.20523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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