TCONS_00014940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014940
Unique NameTCONS_00014940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014940 ID=TCONS_00014940|Name=TCONS_00014940|organism=Clytia hemisphaerica|type=transcript|length=2722bp
aaattttgctcttttttgttgttttctgtTACAATATTATCAGTATTTTA
ACAAAATTGCTGATTGGGACTAACAGTGTCTTatattttagataataaaa
GATGAGGATGAAATTCATGAGATCTTTCTTTGGGTGTTGCGAACTTCGCA
CAGCAGTTGTTATAATTTCAATCTTTGACATTATCTTTGGGTTTTACGAG
ATAATTGATTTTTCAATTAGAACATACCTTGAATTACATTATCACTTTGA
TGAGCAAAAAAAGACAATCACAAATAATGTAAATTCAACATCAAGCAACA
TCACTTCATCTTTTAATATATCTATGGAATCGCCACATGATGAACTTTAC
ACAGATTCTGCATTTGCAATCATTGTCATTGGATGTATTGATCTGTTCAT
TTCATCATTTCTGCTCTATGTTTCACTCCTGCGCAAATATGAATTACGAG
TTGTCGTCTTTGTTGCAGCTATATGGGGTTTTGTAATGGCTTTCCTGAAT
CTTATTTCATTTGGTATCACCCTTTCTCTTGGAGAGTATGCAGAAATGGC
TCTCTTTCTATTTGTTGGTCTCCTGGAATCATTCTTTGGAtatgtcattt
tatcatttttccaCTTCATGACAGTTATTGTGGAAAGAGGCTTAGATGAA
GTCAACATGGCATACTTTGCAGAAGATGACACAGTGATTACTACCATTCC
TTCGGAGATCCAAATGGATGACACAGGTGATGATCGCCTTGTTATGGATG
ACCTAAATGAAGATTATCCAGAGTTTGGCGATGATGGGCATATACCCCTG
CACATAGTTGGGTAGTTTGTACTGTAATATAACTTTGCTTGATAACAAAA
TCACAATTTACAATCAATTATCAAAAGCacttaaagaaaaatcaatagaT
TAACTAAACTAATTCAAAATTACCTGTacctttttttagaaagaatTGAA
GAATATATAAAAAAGGAGGTTCAAAGTGAAGAAGTGCGGAATTGTACTTT
TTTATTGATGCTCGTTACAAAGTTGGTTCTATCATAACAATTTGTTGATG
AAAAGTTTCTTCAAGGTTTATTGCCTCGTGTTAAATGATTGATCCAAAAT
CCTTAAGTGtcaacaattttacaattttacaatttattgAGCAAAAGCTC
CTGCAAGAAACTTTTTAGATCTTGATTTTATACtttgtaaaaatttagat
tCAGACCAGTGGCaaggatttaaaaaatctcaTTCCCATATAGCTTACTA
TTAGAATTAGCAACTAGGTATAactgattttccgattttgtaatcatttt
taataattataatGTAAAATATAATTGTGGTTGTTTGATTTCGTTTATCT
AGTagatattttaataaatattttgtaattAATAAATTTAGAAATAGAGG
ATTTAGTATTTAATACTAAAAATAGAAGTTTTCAATTTGGGGCTAACCAT
TGTTGGAGATTTTTTTTAAGCTCAAATATGCAAGTCAACTGCAATTTTAT
TATTGAGCAGCTGGTTGACTAGTCCCAATTTATCTTCACTAAAATGCTTA
TTTGTAGTTTTTTATTAACAATGTTTTGGTAATATTTAAAGTTTAGAATA
GGGCTTGGCttgaaaaattgttggtttgccgtcacccgaccctagatttt
ggagctgggtcggtcggtcggaatttatttttattttggcgatttatgaa
attttcgtccatggaagggttaacattttgtttacatttaggtaattttg
aataaaaaacagaagtgctagcagggaatttacgattcttatgcttgagt
gttgagacaaacaagatacgagttttgattttatatactttgaagttttt
gaaggaaaaaaatcttctttacgaaaatggcaataaaatttttcgggtcg
gcaggtttcgatGTAGGGCAGGTCGGGTGACAGCAAAGCAACGATTTTTT
AAGTCCAACCTAGATCATTATGCacacttttttatttaagaatAGTTTTT
AACTTCAGTTTCATTTTGTTTAAGCgcctttttcaactttttcaattcat
ttttctttcaaatagttTCTAGTTCGTTTATATTTTGtatataaaaataa
ttaaaaagttAACCTGCTAGTTTTCATTTGTTGGTAGGTAGTAGGCAGTC
TCATAAAAAAACAGTCGTGTGCTTTTTAACAGCTTTGGCATTTAattctt
ctcttttttcaaaatttgttctGATTTGTTTGATGACCTTATTCATGAAT
CTTTTCTCAGAATAATCAACAGACATAGCCTGAAATAGCTAGTTATCTTA
AACCCTCTCTACTTATCACTGCCAATTTATTTACCTAAATATAATtagta
tttattttatttagagaACCTACTAAATGTTGTCACTTGGGTGGTTTCCA
GCCTAACGAACAATTTcttaaacatgttcttaattttcatAACACTAAAA
GTCCTTATGTCGAATTTAGAAACACCAAAAACTGGGAAAATCAAGTCTGT
TCTTGACACGACCCTTACAAATTCTTTTCTGAGCTGAGTCTGGCCATATT
CTTATGATGCTCTtaagatttttgccgattttcaGCCTAAATGCTCTTAA
ACTTATGGTTCTAATGAAAAATAAGCTATATATACAGTACACGTTGCTGA
ATTTAATACTAAATCGTCAATTAACACGTTTTAATTAATGGCTGAGTTTT
AAAAAAGTTTCACATCTTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00014940-protein

>TCONS_00014940-protein ID=TCONS_00014940-protein|Name=TCONS_00014940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MRMKFMRSFFGCCELRTAVVIISIFDIIFGFYEIIDFSIRTYLELHYHFD
EQKKTITNNVNSTSSNITSSFNISMESPHDELYTDSAFAIIVIGCIDLFI
SSFLLYVSLLRKYELRVVVFVAAIWGFVMAFLNLISFGITLSLGEYAEMA
LFLFVGLLESFFGYVILSFFHFMTVIVERGLDEVNMAYFAEDDTVITTIP
SEIQMDDTGDDRLVMDDLNEDYPEFGDDGHIPLHIVG
Run BLAST on NCBI

transcript from alignment at sc0000201:352288..355122+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014940 ID=TCONS_00014940|Name=TCONS_00014940|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at sc0000201:352288..355122+ (Clytia hemisphaerica)
aaattttgctcttttttgttgttttctgtTACAATATTATCAGTATTTTA
ACAAAATTGCTGATTGGGACTAACAGTGTCTTatattttagataataaaa
GATGAGGATGAAATTCATGAGATCTTTCTTTGGGTGTTGCGAACTTCGCA
CAGCAGTTGTTATAATTTCAATCTTTGACATTGTAAGTTTGTTATTTGTa
atctttttatcatttttatcataTTAAACCATTACAAATTCAGATTGATT
TTCATCATCATCAGctatttattcttttttttcttattccTTTAGATCTT
TGGGTTTTACGAGATAATTGATTTTTCAATTAGAACATACCTTGAATTAC
ATTATCACTTTGATGAGCAAAAAAAGACAATCACAAATAATGTAAATTCA
ACATCAAGCAACATCACTTCATCTTTTAATATATCTATGGAATCGCCACA
TGATGAACTTTACACAGATTCTGCATTTGCAATCATTGTCATTGGATGTA
TTGATCTGTTCATTTCATCATTTCTGCTCTATGTTTCACTCCTGCGCAAA
TATGAATTACGAGTTGTCGTCTTTGTTGCAGCTATATGGGGTTTTGTAAT
GGCTTTCCTGAATCTTATTTCATTTGGTATCACCCTTTCTCTTGGAGAGT
ATGCAGAAATGGCTCTCTTTCTATTTGTTGGTCTCCTGGAATCATTCTTT
GGAtatgtcattttatcatttttccaCTTCATGACAGTTATTGTGGAAAG
AGGCTTAGATGAAGTCAACATGGCATACTTTGCAGAAGATGACACAGTGA
TTACTACCATTCCTTCGGAGATCCAAATGGATGACACAGGTGATGATCGC
CTTGTTATGGATGACCTAAATGAAGATTATCCAGAGTTTGGCGATGATGG
GCATATACCCCTGCACATAGTTGGGTAGTTTGTACTGTAATATAACTTTG
CTTGATAACAAAATCACAATTTACAATCAATTATCAAAAGCacttaaaga
aaaatcaatagaTTAACTAAACTAATTCAAAATTACCTGTaccttttttt
agaaagaatTGAAGAATATATAAAAAAGGAGGTTCAAAGTGAAGAAGTGC
GGAATTGTACTTTTTTATTGATGCTCGTTACAAAGTTGGTTCTATCATAA
CAATTTGTTGATGAAAAGTTTCTTCAAGGTTTATTGCCTCGTGTTAAATG
ATTGATCCAAAATCCTTAAGTGtcaacaattttacaattttacaatttat
tgAGCAAAAGCTCCTGCAAGAAACTTTTTAGATCTTGATTTTATACtttg
taaaaatttagattCAGACCAGTGGCaaggatttaaaaaatctcaTTCCC
ATATAGCTTACTATTAGAATTAGCAACTAGGTATAactgattttccgatt
ttgtaatcatttttaataattataatGTAAAATATAATTGTGGTTGTTTG
ATTTCGTTTATCTAGTagatattttaataaatattttgtaattAATAAAT
TTAGAAATAGAGGATTTAGTATTTAATACTAAAAATAGAAGTTTTCAATT
TGGGGCTAACCATTGTTGGAGATTTTTTTTAAGCTCAAATATGCAAGTCA
ACTGCAATTTTATTATTGAGCAGCTGGTTGACTAGTCCCAATTTATCTTC
ACTAAAATGCTTATTTGTAGTTTTTTATTAACAATGTTTTGGTAATATTT
AAAGTTTAGAATAGGGCTTGGCttgaaaaattgttggtttgccgtcaccc
gaccctagattttggagctgggtcggtcggtcggaatttatttttatttt
ggcgatttatgaaattttcgtccatggaagggttaacattttgtttacat
ttaggtaattttgaataaaaaacagaagtgctagcagggaatttacgatt
cttatgcttgagtgttgagacaaacaagatacgagttttgattttatata
ctttgaagtttttgaaggaaaaaaatcttctttacgaaaatggcaataaa
atttttcgggtcggcaggtttcgatGTAGGGCAGGTCGGGTGACAGCAAA
GCAACGATTTTTTAAGTCCAACCTAGATCATTATGCacacttttttattt
aagaatAGTTTTTAACTTCAGTTTCATTTTGTTTAAGCgcctttttcaac
tttttcaattcatttttctttcaaatagttTCTAGTTCGTTTATATTTTG
tatataaaaataattaaaaagttAACCTGCTAGTTTTCATTTGTTGGTAG
GTAGTAGGCAGTCTCATAAAAAAACAGTCGTGTGCTTTTTAACAGCTTTG
GCATTTAattcttctcttttttcaaaatttgttctGATTTGTTTGATGAC
CTTATTCATGAATCTTTTCTCAGAATAATCAACAGACATAGCCTGAAATA
GCTAGTTATCTTAAACCCTCTCTACTTATCACTGCCAATTTATTTACCTA
AATATAATtagtatttattttatttagagaACCTACTAAATGTTGTCACT
TGGGTGGTTTCCAGCCTAACGAACAATTTcttaaacatgttcttaatttt
catAACACTAAAAGTCCTTATGTCGAATTTAGAAACACCAAAAACTGGGA
AAATCAAGTCTGTTCTTGACACGACCCTTACAAATTCTTTTCTGAGCTGA
GTCTGGCCATATTCTTATGATGCTCTtaagatttttgccgattttcaGCC
TAAATGCTCTTAAACTTATGGTTCTAATGAAAAATAAGCTATATATACAG
TACACGTTGCTGAATTTAATACTAAATCGTCAATTAACACGTTTTAATTA
ATGGCTGAGTTTTAAAAAAGTTTCACATCTTCAAG

Coding sequence (CDS) from alignment at sc0000201:352288..355122+

>TCONS_00014940 ID=TCONS_00014940|Name=TCONS_00014940|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000201:352288..355122+ (Clytia hemisphaerica)
ATGAGGATGAAATTCATGAGATCTTTCTTTGGGTGTTGCGAACTTCGCAC
AGCAGTTGTTATAATTTCAATCTTTGACATTATCTTTGGGTTTTACGAGA
TAATTGATTTTTCAATTAGAACATACCTTGAATTACATTATCACTTTGAT
GAGCAAAAAAAGACAATCACAAATAATGTAAATTCAACATCAAGCAACAT
CACTTCATCTTTTAATATATCTATGGAATCGCCACATGATGAACTTTACA
CAGATTCTGCATTTGCAATCATTGTCATTGGATGTATTGATCTGTTCATT
TCATCATTTCTGCTCTATGTTTCACTCCTGCGCAAATATGAATTACGAGT
TGTCGTCTTTGTTGCAGCTATATGGGGTTTTGTAATGGCTTTCCTGAATC
TTATTTCATTTGGTATCACCCTTTCTCTTGGAGAGTATGCAGAAATGGCT
CTCTTTCTATTTGTTGGTCTCCTGGAATCATTCTTTGGAtatgtcatttt
atcatttttccaCTTCATGACAGTTATTGTGGAAAGAGGCTTAGATGAAG
TCAACATGGCATACTTTGCAGAAGATGACACAGTGATTACTACCATTCCT
TCGGAGATCCAAATGGATGACACAGGTGATGATCGCCTTGTTATGGATGA
CCTAAATGAAGATTATCCAGAGTTTGGCGATGATGGGCATATACCCCTGC
ACATAGTTGGGTAGATGAGGATGAAATTCATGAGATCTTTCTTTGGGTGT
TGCGAACTTCGCACAGCAGTTGTTATAATTTCAATCTTTGACATTATCTT
TGGGTTTTACGAGATAATTGATTTTTCAATTAGAACATACCTTGAATTAC
ATTATCACTTTGATGAGCAAAAAAAGACAATCACAAATAATGTAAATTCA
ACATCAAGCAACATCACTTCATCTTTTAATATATCTATGGAATCGCCACA
TGATGAACTTTACACAGATTCTGCATTTGCAATCATTGTCATTGGATGTA
TTGATCTGTTCATTTCATCATTTCTGCTCTATGTTTCACTCCTGCGCAAA
TATGAATTACGAGTTGTCGTCTTTGTTGCAGCTATATGGGGTTTTGTAAT
GGCTTTCCTGAATCTTATTTCATTTGGTATCACCCTTTCTCTTGGAGAGT
ATGCAGAAATGGCTCTCTTTCTATTTGTTGGTCTCCTGGAATCATTCTTT
GGAtatgtcattttatcatttttccaCTTCATGACAGTTATTGTGGAAAG
AGGCTTAGATGAAGTCAACATGGCATACTTTGCAGAAGATGACACAGTGA
TTACTACCATTCCTTCGGAGATCCAAATGGATGACACAGGTGATGATCGC
CTTGTTATGGATGACCTAAATGAAGATTATCCAGAGTTTGGCGATGATGG
GCATATACCCCTGCACATAGTTGGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008355XLOC_008355Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014940-proteinTCONS_00014940-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014940-exon-sc0000201-1491911889:352288..352469TCONS_00014940-exon-sc0000201-1491911889:352288..352469Clytia hemisphaericaexon
TCONS_00014940-exon-sc0000201-1510915933:352288..352469TCONS_00014940-exon-sc0000201-1510915933:352288..352469Clytia hemisphaericaexon
TCONS_00014940-exon-sc0000201-1575043694:352288..352469TCONS_00014940-exon-sc0000201-1575043694:352288..352469Clytia hemisphaericaexon
TCONS_00014940-exon-sc0000201-1491911889:352583..355122TCONS_00014940-exon-sc0000201-1491911889:352583..355122Clytia hemisphaericaexon
TCONS_00014940-exon-sc0000201-1510915933:352583..355122TCONS_00014940-exon-sc0000201-1510915933:352583..355122Clytia hemisphaericaexon
TCONS_00014940-exon-sc0000201-1575043694:352583..355122TCONS_00014940-exon-sc0000201-1575043694:352583..355122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:352288..355122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05272	1.88089	4.30305	6.48712	15.387	11.3162	10.7232	11.2838	7.30828	6.81501	5.893	3.19057	4.22614	3.19764	3.40699	3.12029	4.55027	4.02723	3.25134	5.67146	5.35531	4.87566	6.51291	7.63569	5.28328	6.25722	6.7327	3.7559	5.90832	5.93306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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