TCONS_00014905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014905
Unique NameTCONS_00014905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014905 ID=TCONS_00014905|Name=TCONS_00014905|organism=Clytia hemisphaerica|type=transcript|length=557bp
CGGCCGAACAAGACACTGAAGCGACCGCGCGACAAGAAGAAATGCATTGT
TGCGAAGAAAAatacgaagaagaagaaaaacgcTCAATGGAGacTTTATC
AACGAAACTTGCGATACCCGAGATCAACTGGGACAAACTGAAcgaagaga
aaaataaaacgaATAAATTACTATCAGAACAACGGAAAGCcctgaataaa
gaaaaaacgAAAGCTTCATCAAGGAGGCGGAGGAAATTAACGCCCTCGGA
ATCGCCCTCTCAAGATTCACTTGaaaaactaaaatcatccttcaaaacaa
aatcagaAGAATGGACTCTAAcggaagaagatgaagaagaagaaaattta
tgataatttatgataaattattttctaCCTTTTTCTCTTTAGATGTTATA
TTTTATTGCCACTGCCTGGTTTATTTTGTTTCGTACCCTCATCATTATAT
TTTTATggttttttaaagcattttattCTGTAGTTATAGAAGAGTAGAGA
ATTTTGTTGAAAGGATTCGAAGGGCCAGAAATCTTGTTAACACAAAGTTG
TGTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000200:367764..369465-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014905 ID=TCONS_00014905|Name=TCONS_00014905|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at sc0000200:367764..369465- (Clytia hemisphaerica)
CGGCCGAACAAGACACTGAAGCGACCGCGCGACAAGAAGAAATGCATTGT
TGCGAAGAAAAATACGAAGAAGAAGAAAAACGCTCAATGGAGGTACGTAT
GACCTTAATTCAGATATCGAAAATATTTGTTTGTTTATCAAATTTTGAAA
ATACCATGTCCACCTATCATGTCCGTTAACTTTTAATTTCAGGGCACTGT
CTCTTCTCTTCAGAAATGAAGGAAAACTGTTTTGATAAGCGGTGGTGTGT
ATCCACCGGTGCGTTGGGTGGTTCAAGATATTGATTTATTATTGATATAA
GCTGAAATATCATTCTTATATATTCTAATGTTTTTCTTTTAGACTTTATC
AACGAAACTTGCGATACCCGAGATCAACTGGGACAAACTGAACGAAGAGA
AAAATAAAACGAATAAATTACTATCAGAACAACGGAAAGCCCTGAATAAA
GAAAAAACGGTTAGTTCAAATGCTTTTAACATCATTTTATCTACCTTTGC
TTAGTGAAGCCCCATACAGGAATGATCAGTTGTCAGTCTCTTCTAAACAT
GCACTAGACGATCCTATCGTCTACACAAAATCACTAAAAAGGGAATAAGT
TAGGGGGCGCGCGGGATAAATTTGAGAATGGCTGTAAGCGCCCGGGTTGG
AGGTGTTTACAGTTACAGTATGGTCCAAACTCTACCACCACTTTTTTCCC
GTAAACCGCCCTCACGCCTTGACTCTGCGCATATATACTTTCCCGCGTTT
ACTGACCCTCTAACGATATCAACGTCTAAGCCTGGACTCTAGCATGGAGT
TCTAAAACCCTGTTCGTTTGTGGGGATTTCAAATTCTCTATTGTTTGCCG
CTCAAAAGCCTGGTTTGAATGAGAGTCCTACCAACAAGGTTTAAATTTCA
GGGTTTTATAGTTATCATGAATTCTGTCGATATTCCTAAAGGTCTGGATG
GGGATGTTCATAGATAAGAATCTAAAATTGATATTTGGTCGAACTTTAAT
GCTAATTTTCACTTGTCCTTTTAGAAAGCTTCATCAAGGAGGCGGAGGAA
ATTAACGCCCTCGGAATCGCCCTCTCAAGATTCACTTGGTAAGTTCATTT
CTTGTCCGTGAGATATGTTTCCAGCCGTTTGGCAGCACGTTGTTTCGACG
TTCATCTAAATTTAGATGGACGTTAGATGTCTGTTGGGTATTCCTTCTAA
ATGTTGTAAAGCCTTTGGAAATTGAAAAGTGGAATGTTGATTTTTATCTG
ATGAATATTATGGATATACTTGGATCGACAGTACTGAGAATTATCCTTTA
CCCAAGCAAGTTTTTCTATATTATTGATCTGGATAGACTAGACCTAGCCA
AAGGAAATACAACTGCAAGCTTCAATTAACGTGGTGGGTTGTATAAACCT
GATCTTTTCTATGTTTAGAAAAACTAAAATCATCCTTCAAAACAAAATCA
GAAGAATGGACTCTAACGGAAGAAGATGAAGAAGAAGAAAATTTATGATA
ATTTATGATAAATTATTTTCTACCTTTTTCTCTTTAGATGTTATATTTTA
TTGCCACTGCCTGGTTTATTTTGTTTCGTACCCTCATCATTATATTTTTA
TGGTTTTTTAAAGCATTTTATTCTGTAGTTATAGAAGAGTAGAGAATTTT
GTTGAAAGGATTCGAAGGGCCAGAAATCTTGTTAACACAAAGTTGTGTTT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008334XLOC_008334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014905-exon-sc0000200-1575043694:369374..369465TCONS_00014905-exon-sc0000200-1575043694:369374..369465Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1575043694:369007..369123TCONS_00014905-exon-sc0000200-1575043694:369007..369123Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1575043694:368378..368441TCONS_00014905-exon-sc0000200-1575043694:368378..368441Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1575043694:367764..368047TCONS_00014905-exon-sc0000200-1575043694:367764..368047Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1510915933:369374..369465TCONS_00014905-exon-sc0000200-1510915933:369374..369465Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1510915933:369007..369123TCONS_00014905-exon-sc0000200-1510915933:369007..369123Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1510915933:368378..368441TCONS_00014905-exon-sc0000200-1510915933:368378..368441Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1510915933:367764..368047TCONS_00014905-exon-sc0000200-1510915933:367764..368047Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1491911889:369374..369465TCONS_00014905-exon-sc0000200-1491911889:369374..369465Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1491911889:369007..369123TCONS_00014905-exon-sc0000200-1491911889:369007..369123Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1491911889:368378..368441TCONS_00014905-exon-sc0000200-1491911889:368378..368441Clytia hemisphaericaexon
TCONS_00014905-exon-sc0000200-1491911889:367764..368047TCONS_00014905-exon-sc0000200-1491911889:367764..368047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:367764..369465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.404642	0	0	0	0.0986325	0	0	0.784758	1.56901	2.75127	3.13129	5.78089	9.23178	1.6102	2.20662	4.95957	3.19861	5.49276	4.38419	10.8063	7.41254	7.65359	5.63835	0	0	20.5004	11.3732	13.7242	6.17328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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