|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014866 ID=TCONS_00014866|Name=TCONS_00014866|organism=Clytia hemisphaerica|type=transcript|length=1114bpRun BLAST on NCBI protein sequence of TCONS_00014866-protein >TCONS_00014866-protein ID=TCONS_00014866-protein|Name=TCONS_00014866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp RQCIVGESFPERILMLLDFPSNFYKLADQNPRKTLRLFQVFLKKILVGFLRun BLAST on NCBI transcript from alignment at sc0000200:428757..461139+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014866 ID=TCONS_00014866|Name=TCONS_00014866|organism=Clytia hemisphaerica|type=transcript|length=32383bp|location=Sequence derived from alignment at sc0000200:428757..461139+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000200:428757..461139+ >TCONS_00014866 ID=TCONS_00014866|Name=TCONS_00014866|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0000200:428757..461139+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014866 vs. Swiss-Prot (Human)
Match: CCNL2 (Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.062e-54 Identity = 89/143 (62.24%), Postives = 112/143 (78.32%), Query Frame = 3
Query: 684 YFNLKNGIIKAERRILKDLGFCVHVKHPHKLIITYLQMIGHEKNQNLARRAWNYMNDSLRSDVFVRFPPESIACACIFLAARNEQVPLPQRPAWFQIFDATYNEIEDISISIMRLYSKPKRKLAHLESLVSKLRKEKAEKEKT 1112
Y NLKN IIKAERR+LK+LGFCVHVKHPHK+I+ YLQ++ E+NQ+L + +WNYMNDSLR+DVFVRF PESIACACI+LAAR ++PLP RP WF +F AT EI++I + I++LY++ K L HLE V K RK E+ K
Sbjct: 169 YVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKILQLYARKKVDLTHLEGEVEK-RKHAIEEAKA 310 HSP 2 Score: 153.295 bits (386), Expect = 2.979e-41 Identity = 74/123 (60.16%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 190 YDRILISLENCILPSERLDETPSMKDGLDRDTENDLRSFACEMIQIAGILLKIPQVAMATGQVLLQRFYFSKSMVKLDVEVSAMAAIFLAAKIEESPRRIRDVINVCHHIKQRMLQNPNKTTP 558
Y +LI+LENC+LP ++L TPSM GLD DTE DLR CE+IQ AGILL++PQVAMATGQVL QRF+++KS VK +E +MA + LA+KIEE+PRRIRDVINV H ++Q L++ K P
Sbjct: 42 YSGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQ--LRDKKKPVP 162 The following BLAST results are available for this feature:
BLAST of TCONS_00014866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.