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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014862 ID=TCONS_00014862|Name=TCONS_00014862|organism=Clytia hemisphaerica|type=transcript|length=2422bp CAAGCgagcgaaagcaaatttagccaaatggaagctaaaaattgatggat tatggagtcattcacgccgagctggaattattactatACGCCAACTGAAa ttcaaacaatctttgtaagtacccttacgccaatgcgccaaaaacgtttc agttgtacgccgaagaacttcggcgttagttacacgaaatccatactggc cgactggtacgtcggtcaggaactgggcactagtaagtaccgctcgcttc gaaagttttttattctaagaagatcgcctcaaataaaaaatcaaaacaaa cacgaagagcatgttaaaagttgtctaaccgttggtcgaaaaggattttc aaaaaagtaaaaagttagtgaaaaatatttgaatcaaaaaatttcggtcg ccaactgggcagggtactctatAAACAGAATAAACAGATGCTTGGAAAAT ATGAACAAAGATAACTTGGTAAAGCATGATAATCTTACTCTTGTAGTCTT GACCATTGACTTTGGAGACAGAATAAAACTCGTCAGGCTGTCAGGGTATA AGTTATTCAACTCTGAAAACTCTGCTTTGCCATGATGGACTTTGACCCCg acagtttgttttgatttttatgctAAGATCAGCAGAATATCAGGTCAATG TGAAATCTCACGAAACGTACTTCTCCACCGCagagttttttaaaagaatt ctcAGAAAAATATCTCTTAACTTAAAAGCACTCCGGAGAAGAGATATCGT CCCCAGTTTACTTTCCTCCACGCTGAACGCGTCGTGTCGTGGCAGTGGAA AGTGTCGGtgagattttcaaaacaaatcataACAAAACACCAGAACTTTA TCGTGACGACCAATAAAGAACTAGTACCAAAATGGCAGGCAAGAACAAGT TAACTCAAGAAGAAGAACTTCTTCTCCAGGATTTTAGCCGAACTGTTTCA AAGAAATCGCAAGTCTTATTCTATGGAAATGCACTCATGATTGCTGTTTT ACCCCTATggTTATTCTGGAAAGTCCACCTCATGGACCCAATGACCTATG CTGTCCTCTTCATTGTTGGTACTGTAATCTCTGCTTACTTAGTCGCATTC GCATACAGAAATACCAAATTCACACTTAAACACAAAATTGCACAGAAGAG AGAATCTGCCATTTCAAGAGAGGTCAACGCTGAATTAGACTCAAAAGCTG AAACTAAGAAATTATCACGAAAAGAAAAAGACGATCGTATCTTATGGAAA AAGAACAACGTAGCCGATACTGAAGCAACAACTTTCGCCATCTTCTACAC TAATGCATTATATTTGTTTATCATTATTATGGCCTCATTCTATGTCATGA GATCTTTCACACCACCCGTTAACTTCACCATGTCCACTGGCCTTGCTGCT GGTTTGGTCTCTTTGTTGTCCACTGGATCTCAATAGACATTCTAGTATTG GTATATTTTGGCGGTCATGTATTTCGTTATTCTCGATTCACTAGTTCTAA CATTTCTTAATTGGGAAACTTTAAACAAGTCAATTATGTCATAGACTTTC TAGTACTTGGGATAATGAAATTTATGACcgtaacaatttttcaattttta gtcgATAGTTTTTTAAAGTGCTAATAAATATTAGTATGTTAGACCAATTT AATTTCTATTTTGTATCACTTCACTCAAGCCGTAAAAAGACAATTCCATT TGTTTTCCTACataatttgtttcatttttcatttgactcactctttcatt tcaataaatacattattttttcgaaaatctttgcTTCTAAAAATATCGAT AACGATACATAATTAGGTTATTAGAGGATAATGTTATAATTTCGGTTACA GTTTGAGTACAATTGATGTCGAAATTCGTCTAAACCACACAGGGACTGAT AGACTAAAGCTGAATTTTCTTTCATCAAAACTACCGAAGTTTCTGTCACT TTCGATTTATCTTATAGACACACTAGacactttttttctcaaaattagaa attaagTATAaaatagttcatttgtttttccTGATGAAGTTAACTACTTT CAGTGCAGTTTTAGCGTCTTCAGTTTTTGAGCGAGTTGCGCGACTTCTCG ATCCTTGACTCGAGCCTCTTCGTTCTCCATTTTGCTTTTGCATTTTCTTC TCGATAGCAATTCTCTCTTTGACGTCTTCATcgtgtttatttttcaaact caTTCCATACATCATGGCTTGCTGTTGGAGAGATTGATCCTGAGAATTCT GTTGCTTTTTGGGGCTCCTTGAGAAGAAGCCTCCTCCGCCattattgttg ttgttatttGATGGTTGCTTCTTTTTGAACAACGGCATATCTCtcaatgt tttgtttttctttttctttttgtttagatCATCTGAAaggtaaaaattga atatgaataTATAGAAGCTCAT Run BLAST on NCBI protein sequence of TCONS_00014862-protein >TCONS_00014862-protein ID=TCONS_00014862-protein|Name=TCONS_00014862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAGKNKLTQEEELLLQDFSRTVSKKSQVLFYGNALMIAVLPLWLFWKVHL MDPMTYAVLFIVGTVISAYLVAFAYRNTKFTLKHKIAQKRESAISREVNA ELDSKAETKKLSRKEKDDRILWKKNNVADTEATTFAIFYTNALYLFIIIM ASFYVMRSFTPPVNFTMSTGLAAGLVSLLSTGSQ Run BLAST on NCBI transcript from alignment at sc0000200:316027..320777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014862 ID=TCONS_00014862|Name=TCONS_00014862|organism=Clytia hemisphaerica|type=transcript|length=4751bp|location=Sequence derived from alignment at sc0000200:316027..320777+ (Clytia hemisphaerica) CAAGCgagcgaaagcaaatttagccaaatggaagctaaaaattgatggat
tatggagtcattcacgccgagctggaattattactatACGCCAACTGAAa
ttcaaacaatctttgtaagtacccttacgccaatgcgccaaaaacgtttc
agttgtacgccgaagaacttcggcgttagttacacgaaatccatactggc
cgactggtacgtcggtcaggaactgggcactagtaagtaccgctcgcttc
gaaagttttttattctaagaagatcgcctcaaataaaaaatcaaaacaaa
cacgaagagcatgttaaaagttgtctaaccgttggtcgaaaaggattttc
aaaaaagtaaaaagttagtgaaaaatatttgaatcaaaaaatttcggtcg
ccaactgggcagggtactctatAAACAGAATAAACAGATGCTTGGAAAAT
ATGAACAAAGATAACTTGGTAAAGCATGATAATCTTACTCTTGTAGTCTT
GACCATTGACTTTGGAGACAGAATAAAACTCGTCAGGCTGTCAGGGTATA
AGTTATTCAACTCTGAAAACTCTGCTTTGCCATGATGGACTTTGACCCCg
acagtttgttttgatttttatgctAAGATCAGCAGAATATCAGGTCAATG
TGAAATCTCACGAAACGTACTTCTCCACCGCagagttttttaaaagaatt
ctcAGAAAAATATCTCTTAACTTAAAAGCACTCCGGAGAAGAGATATCGT
CCCCAGTTTACTTTCCTCCACGCTGAACGCGTCGTGTCGTGGCAGTGGAA
AGTGTCGGtgagattttcaaaacaaatcataACAAAACACCAGAACTTTA
TCGTGACGACCAATAAAGAACTAGTACCAAAATGGCAGGCAAGAACAAGT
TAACTCAAGAAGAAGAACTTCTTCTCCAGGATTTTAGCCGAACTGTTTCA
AAGAAATCGCAAGTCTTATTCTATGGAAATGCACTCATGATTGCTGTTTT
ACCCCTATGTaagattttaataatttttatacCTTTACATTTCACCAGCT
TGGACTTCATATGTCAAGATATAGTGCTAAAAATCCATCAGTCTTTCTGT
CAGATTTCTGTCTCAGctttcatcaaatttcaataAGACAAAGTATTAAA
GGCTTGACCAATTTTGCATTAGATTTGATCGACTTTCCGAATTTTGATGC
GGTAGAGCTGTCattatatatttattatttattattttataacaCACCAA
ATTTCATGGAGATTGggacaaaagaaaatagaacaTATATTCCATATGCA
GCCATTCCATGGCATTTAATGACCTTTCCGTGTTTTTAATCCAGTCTTTC
AATTGCCGTTTTTATGAGCTTAAAAGAGATAAAGCTTTTTCTTTCCATCT
ACGTATACAATCTTATAAAATTTATTGTGCGAGGTATTAGCAAATACTAG
AGGGCTGTCCCCCCTCGTCCAGTTTAAAATGCCACAAGtcatttcttttg
atttgaacaGTCGAAAGCTCAAAAATTGTGTTCCTCAAATGAAATCCTCT
CTTGTGCAAGACCAAGGATTCTCTTTGTTTGACAGCCCGCACAAACCTTG
AAAATTCACAGACGGTCAGTTTTTTCTGACACTACGTTAACTTCATGTAA
TGCCAACATACTTTGTCTAATTCTGTCATAGCAAATATCTtgtcttttaa
atgtttataataGAACGTTAACTTCATGTAATGCCAACATACTTTGTCTA
ATTCTGTCATAGCAAATATCTtgtcttttaaatgtttataataGAACCTT
CTGAGTAAGCTGTTTGAACAAATCACTGTAAGTTCTTTGCAGAGCTGATA
GTTGCTGTGACAGAATTAGACAAGGTGTGTGGGCATTAcacaaagtttag
aaattatctgttatttttaaatataaactatgcgagcaatagcaaaaaaa
atatatggttgAGGAATTAATGATTGGGTATATACAGCAACAAAGGGTTG
AATATCTTGAGATTAAAGATTTATTGCCACTGCAACATTAAAATAAAAGG
TGTTGGGGGCTCATAAACAAAACCTCCAATTGATGTTTTCCTGTCAAGTT
GAATGGCTCCCCTAAGTTGTTGCTATCTACTTTCATAGGCCAATGCTACT
TGTAAACCATACATGTGACACTATATTGGATATTTGGACTAGTTGTCCCC
TGGAATTAGTGTTCACCTCTTGATAGAGAATTCCTTGTTTAGGAGAGGGC
ACCCCCCCCctgaaaccttgaaaaaccCTCTGGAACCTTAAAAATCTTTG
ACAACCTTCTTCAATATTCAGTAACTCCACAGGAAATCCAACAACAAGTT
AAGATACATGGAAAAGCAAGTCTTAGAAGTTGGTGTAATGTCGAGATTTC
TCACCCAATTTAGACAAACATCtttaaaacttgaaattaaAGGAAGGTTG
GAATCGCTAAGTAATTGAAActatatttctttgcttagcaatcagAGAAA
AAAGTCTTTGGAGGGGGATGTGCAGCTTAATAAATATCCAAATGCTACTT
CTTTAAATTGCTGCATTATTTTTAAGAGtaagaaagtaagaaaaaatcCA
CTCAGGccttattttgacttttagaaAAAATGATAATCATCTCAATAATA
ACAATACCTATACTACTATGGGTCGGAAAGGTAGATATCAGTATTtagaa
cttttctttttctttttagggTTATTCTGGAAAGTCCACCTCATGGACCC
AATGACCTATGCTGTCCTCTTCATTGTTGGTACTGTAATCTCTGCTTACT
TAGTCGCATTCGCATACAGAAATACCAAATTCACACTTAAACACAAAATT
GCACAGAAGAGAGAATCTGCCATTTCAAGAGAGGTAAATTATGAGTTAAT
TTGTTTTCCTGAACTACAAAATCAGAAAGGGGGTGCAAGAGACCATCCAG
AACCATGGTCTTTTTGCATGAATTACTGGAAACTGgtcaatttttacaaa
aataaagttACCAGtgggtacatgttttttttataagcaagcgtatgccc
cttggtcaggcgcgtgtatgcttaagttcttaaagcatccaggcatagct
tatgcagtattatatgcttatgattcaccccgagccaagtttttagtgaa
atttcagacattttataaaaatttgttcagattttgggagcagtggattg
tagctagccgtggaatgtatttttttactttaccTAGCTACCAagccttt
ttaaacagataaaaaatgacaacttgaaaaatattccaggCTGACAttta
tgcttatgttatgcgtaggaattctgcaaatctgagccttcatatgctta
taagcgtcatgcttataaaaaaaacatgtagttaaGATACAACTTTTTTA
GGttcacttttttaaaaaaatctccaGAAATTGACTTctcttattttgaa
atttgtctTTTTAAGCTTTCAAGTTAACCTAATAATATTTTCTTGCATCA
GGTCAACGCTGAATTAGACTCAAAAGCTGAAACTAAGAAATTATCACGAA
AAGAAAAAGACGATCGTATCTTATGGAAAAAGAACAACGTAGCCGATACT
GAAGCAACAACTTTCGCCATCTTCTACACTAATGCATTATATTTGTTTAT
CATTATTATGGCCTCATTCTATGTCATGAGATCTTTCACACCACCCGTTA
ACTTCACCATGTCCACTGGCCTTGCTGCTGGTTTGGTCTCTTTGTTGTCC
ACTGGATCTCAATAGACATTCTAGTATTGGTATATTTTGGCGGTCATGTA
TTTCGTTATTCTCGATTCACTAGTTCTAACATTTCTTAATTGGGAAACTT
TAAACAAGTCAATTATGTCATAGACTTTCTAGTACTTGGGATAATGAAAT
TTATGACcgtaacaatttttcaatttttagtcgATAGTTTTTTAAAGTGC
TAATAAATATTAGTATGTTAGACCAATTTAATTTCTATTTTGTATCACTT
CACTCAAGCCGTAAAAAGACAATTCCATTTGTTTTCCTACataatttgtt
tcatttttcatttgactcactctttcatttcaataaatacattatttttt
cgaaaatctttgcTTCTAAAAATATCGATAACGATACATAATTAGGTTAT
TAGAGGATAATGTTATAATTTCGGTTACAGTTTGAGTACAATTGATGTCG
AAATTCGTCTAAACCACACAGGGACTGATAGACTAAAGCTGAATTTTCTT
TCATCAAAACTACCGAAGTTTCTGTCACTTTCGATTTATCTTATAGACAC
ACTAGacactttttttctcaaaattagaaattaagTATAaaatagttcat
ttgtttttccTGATGAAGTTAACTACTTTCAGTGCAGTTTTAGCGTCTTC
AGTTTTTGAGCGAGTTGCGCGACTTCTCGATCCTTGACTCGAGCCTCTTC
GTTCTCCATTTTGCTTTTGCATTTTCTTCTCGATAGCAATTCTCTCTTTG
ACGTCTTCATcgtgtttatttttcaaactcaTTCCATACATCATGGCTTG
CTGTTGGAGAGATTGATCCTGAGAATTCTGTTGCTTTTTGGGGCTCCTTG
AGAAGAAGCCTCCTCCGCCattattgttgttgttatttGATGGTTGCTTC
TTTTTGAACAACGGCATATCTCtcaatgttttgtttttctttttcttttt
gtttagatCATCTGAAaggtaaaaattgaatatgaataTATAGAAGCTCA
T Coding sequence (CDS) from alignment at sc0000200:316027..320777+ >TCONS_00014862 ID=TCONS_00014862|Name=TCONS_00014862|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0000200:316027..320777+ (Clytia hemisphaerica) ATGGCAGGCAAGAACAAGTTAACTCAAGAAGAAGAACTTCTTCTCCAGGA TTTTAGCCGAACTGTTTCAAAGAAATCGCAAGTCTTATTCTATGGAAATG CACTCATGATTGCTGTTTTACCCCTATggTTATTCTGGAAAGTCCACCTC ATGGACCCAATGACCTATGCTGTCCTCTTCATTGTTGGTACTGTAATCTC TGCTTACTTAGTCGCATTCGCATACAGAAATACCAAATTCACACTTAAAC ACAAAATTGCACAGAAGAGAGAATCTGCCATTTCAAGAGAGGTCAACGCT GAATTAGACTCAAAAGCTGAAACTAAGAAATTATCACGAAAAGAAAAAGA CGATCGTATCTTATGGAAAAAGAACAACGTAGCCGATACTGAAGCAACAA CTTTCGCCATCTTCTACACTAATGCATTATATTTGTTTATCATTATTATG GCCTCATTCTATGTCATGAGATCTTTCACACCACCCGTTAACTTCACCAT GTCCACTGGCCTTGCTGCTGGTTTGGTCTCTTTGTTGTCCACTGGATCTC AATAGATGGCAGGCAAGAACAAGTTAACTCAAGAAGAAGAACTTCTTCTC CAGGATTTTAGCCGAACTGTTTCAAAGAAATCGCAAGTCTTATTCTATGG AAATGCACTCATGATTGCTGTTTTACCCCTATggTTATTCTGGAAAGTCC ACCTCATGGACCCAATGACCTATGCTGTCCTCTTCATTGTTGGTACTGTA ATCTCTGCTTACTTAGTCGCATTCGCATACAGAAATACCAAATTCACACT TAAACACAAAATTGCACAGAAGAGAGAATCTGCCATTTCAAGAGAGGTCA ACGCTGAATTAGACTCAAAAGCTGAAACTAAGAAATTATCACGAAAAGAA AAAGACGATCGTATCTTATGGAAAAAGAACAACGTAGCCGATACTGAAGC AACAACTTTCGCCATCTTCTACACTAATGCATTATATTTGTTTATCATTA TTATGGCCTCATTCTATGTCATGAGATCTTTCACACCACCCGTTAACTTC ACCATGTCCACTGGCCTTGCTGCTGGTTTGGTCTCTTTGTTGTCCACTGG ATCTCAATAGATGGCAGGCAAGAACAAGTTAACTCAAGAAGAAGAACTTC TTCTCCAGGATTTTAGCCGAACTGTTTCAAAGAAATCGCAAGTCTTATTC TATGGAAATGCACTCATGATTGCTGTTTTACCCCTATggTTATTCTGGAA AGTCCACCTCATGGACCCAATGACCTATGCTGTCCTCTTCATTGTTGGTA CTGTAATCTCTGCTTACTTAGTCGCATTCGCATACAGAAATACCAAATTC ACACTTAAACACAAAATTGCACAGAAGAGAGAATCTGCCATTTCAAGAGA GGTCAACGCTGAATTAGACTCAAAAGCTGAAACTAAGAAATTATCACGAA AAGAAAAAGACGATCGTATCTTATGGAAAAAGAACAACGTAGCCGATACT GAAGCAACAACTTTCGCCATCTTCTACACTAATGCATTATATTTGTTTAT CATTATTATGGCCTCATTCTATGTCATGAGATCTTTCACACCACCCGTTA ACTTCACCATGTCCACTGGCCTTGCTGCTGGTTTGGTCTCTTTGTTGTCC ACTGGATCTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00014862-exon-sc0000200-1491911889:316027..317034 | TCONS_00014862-exon-sc0000200-1491911889:316027..317034 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1510915933:316027..317034 | TCONS_00014862-exon-sc0000200-1510915933:316027..317034 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1575043694:316027..317034 | TCONS_00014862-exon-sc0000200-1575043694:316027..317034 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1491911889:318746..318909 | TCONS_00014862-exon-sc0000200-1491911889:318746..318909 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1510915933:318746..318909 | TCONS_00014862-exon-sc0000200-1510915933:318746..318909 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1575043694:318746..318909 | TCONS_00014862-exon-sc0000200-1575043694:318746..318909 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1491911889:319528..320777 | TCONS_00014862-exon-sc0000200-1491911889:319528..320777 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1510915933:319528..320777 | TCONS_00014862-exon-sc0000200-1510915933:319528..320777 | Clytia hemisphaerica | exon |
| TCONS_00014862-exon-sc0000200-1575043694:319528..320777 | TCONS_00014862-exon-sc0000200-1575043694:319528..320777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000200 | supercontig | sc0000200:316027..320777 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR009779 | SSR3 |
Vocabulary: Biological Process
| Term | Definition |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane |
Vocabulary: Cellular Component
| Term | Definition |
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006614 |
SRP-dependent cotranslational protein targeting to membrane |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00014862 vs. Swiss-Prot (Human)
Match: SSRG (Translocon-associated protein subunit gamma OS=Homo sapiens GN=SSR3 PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 5.526e-69 Identity = 103/182 (56.59%), Postives = 146/182 (80.22%), Query Frame = 3
Query: 888 GKNKLTQEEELLLQDFSRTVSKKSQVLFYGNALMIAVLPLWLFWKVHLMDPMTYAVLFIVGTVISAYLVAFAYRNTKFTLKHKIAQKRESAISREVNAELDSKAETKKLSRKEKDDRILWKKNNVADTEATTFAIFYTNALYLFIIIMASFYVMRSFTPPVNFTMSTGLAAGLVSLLSTGSQ 1433
G +K EE+LLLQDFSR +S KS LF+GNA +++ +P+WL+W++ MD + AVL+ V T++S YLVAFAY+N KF LKHK+AQKRE A+S+EV +L S+A+ +K+SRKEKD+RILWKKN VAD EATTF+IFY N L+L ++I+ASF+++++F P VN+ +S ++GL++LLSTGS+
Sbjct: 5 GSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKL-SEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK 185
The following BLAST results are available for this feature:
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