TCONS_00014862-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014862-protein
Unique NameTCONS_00014862-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014862-protein ID=TCONS_00014862-protein|Name=TCONS_00014862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAGKNKLTQEEELLLQDFSRTVSKKSQVLFYGNALMIAVLPLWLFWKVHL
MDPMTYAVLFIVGTVISAYLVAFAYRNTKFTLKHKIAQKRESAISREVNA
ELDSKAETKKLSRKEKDDRILWKKNNVADTEATTFAIFYTNALYLFIIIM
ASFYVMRSFTPPVNFTMSTGLAAGLVSLLSTGSQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008321XLOC_008321Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014862TCONS_00014862Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009779SSR3
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009779Translocon-associated protein subunit gammaPFAMPF07074TRAP-gammacoord: 10..182
e-value: 4.7E-75
score: 250.7

Blast
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BLAST of TCONS_00014862-protein vs. Swiss-Prot (Human)
Match: SSRG (Translocon-associated protein subunit gamma OS=Homo sapiens GN=SSR3 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.028e-77
Identity = 103/182 (56.59%), Postives = 146/182 (80.22%), Query Frame = 0 
Query:    3 GKNKLTQEEELLLQDFSRTVSKKSQVLFYGNALMIAVLPLWLFWKVHLMDPMTYAVLFIVGTVISAYLVAFAYRNTKFTLKHKIAQKRESAISREVNAELDSKAETKKLSRKEKDDRILWKKNNVADTEATTFAIFYTNALYLFIIIMASFYVMRSFTPPVNFTMSTGLAAGLVSLLSTGSQ 184
            G +K   EE+LLLQDFSR +S KS  LF+GNA +++ +P+WL+W++  MD +  AVL+ V T++S YLVAFAY+N KF LKHK+AQKRE A+S+EV  +L S+A+ +K+SRKEKD+RILWKKN VAD EATTF+IFY N L+L ++I+ASF+++++F P VN+ +S   ++GL++LLSTGS+
Sbjct:    5 GSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKL-SEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK 185
The following BLAST results are available for this feature:
BLAST of TCONS_00014862-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRG3.028e-7756.59Translocon-associated protein subunit gamma OS=Hom... [more]
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