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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014817 ID=TCONS_00014817|Name=TCONS_00014817|organism=Clytia hemisphaerica|type=transcript|length=446bp
AGTCCATCCTTGGCTCAAATAACGTACTGAAACAATCATTAAACGAAGGA
GGGCTCGATTATTTTGGGCTGACTAAAAATCAGACATTGACTCTCAACCG
AGATGGTACAGCAAAGAGGTTTTCGTGTCTCACTGTCAATGATGATGGCA
CGATCCGACAAAATATCGGTCCCTTCAAAGAAGATGTTCCAATGGATTCC
GCTTGTGGACAACTTTTCTCATTTTTACACGCTTTCCCACAAGACATAAT
GGACAAAATTTCCATGAAGTCTATGCTGAAAATTTCCACTTCAAAAGGAT
CCACTTTGTTTGTTTGCACGCCTTCAAAAGATTTGATGGACAAATCGAAT
TGTTATTGGTCGGTTGATGACGGTGTCACGTGGATAGGTAGTCTGAACAA
ATATATGCTGCGCGCATCCCCTGAAATAGTTTGTAACATAAGGAAT Run BLAST on NCBI protein sequence of TCONS_00014817-protein >TCONS_00014817-protein ID=TCONS_00014817-protein|Name=TCONS_00014817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
SILGSNNVLKQSLNEGGLDYFGLTKNQTLTLNRDGTAKRFSCLTVNDDGT
IRQNIGPFKEDVPMDSACGQLFSFLHAFPQDIMDKISMKSMLKISTSKGS
TLFVCTPSKDLMDKSNCYWSVDDGVTWIGSLNKYMLRASPEIVCNIRN Run BLAST on NCBI transcript from alignment at sc0000198:457142..459233- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014817 ID=TCONS_00014817|Name=TCONS_00014817|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0000198:457142..459233- (Clytia hemisphaerica)
AGTCCATCCTTGGCTCAAATAACGTACTGAAACAATCATTAAACGAAGGA
GGGCTCGATTATTTTGGGCTGACTAAAAATCAGACATTGACTCTCAACCG
AGATGGTACAGCAAAGAGGTTTTCGTGTCTCACTGTCAATGATGATGGCA
CGATCCGACAAAATATCGGTCCCTTCAAAGAAGATGTTCCAATGGATTCC
GCTTGTGGACAACTTTTCTCATTTTTACACGGTACGTTACTCGTCGTCAT
GGGAACCTATTTTAATCACCTCTTCATCGTAAAACTTTTAAAAGTAGAGT
TTCCATAACTCGAACCCGAACGGGAAACGCAAATTTGTTCGAGTTAGGGA
GATTCAGAGTTATGGAGTAAGGTTTATAAGGCGTTTTAGAGAGGCCATAA
AACTTGTTCGAGTTAAGGAGATATTCGAGTTAAAGAGACTCCAATGCACT
TTCATAGTCAGGGAATTCCCGCAACCTCGTTCACGTGTATTCCAGGCTTT
ATTTACGTTACTGATGGACGCCAGGGAATGCGTTGGGAGGAAGTTCTCAA
AACAATATGTCGTGAAACAATCTGATGTTACCAAGATAATTTTTTATGCA
TGTGAAACCTTTAGACATTGTATTCTCCATTTAATTGTATTAGTACGGTC
TAGGGGTGTAAAAATTCTGCATAAAGGCGTAAAAGCATGAGACTTTTCAC
AATTTTTAAGGGCTGAGATTTAAATCTATTTTTGACCCCAAAACTACAAT
TGTGTGAAGTTTCATGCTTTTACGCCAGACTGGACTATATTACATTTTTA
AAATTTCAATTTTTGAAGGTAATTTTAGCCCTCAAATCACCTTACTACTT
CGTTTCGGTGGTCAGAAACCCAAATATTCCAAAAATGGTTTTTGGCGTCT
CTCTTCTTGATTATCAGTAATCAAGGATCAGAAATCAAGAGAAAGGAGCT
GCGCTCTCCTCTACCTTTTGGTGAACGGCTCAGGAAAGGGCTCTCTCGGG
TCATCCTCGGGTCATCCCTGGCAGTGCGGTCTCATCCACAATTTATTCTT
CTCTTTCCAGCTTTCCCACAAGACATAATGGACAAAATTTCCATGAAGTC
TATGCTGAAAATTTCCACTTCAAAAGGATCCACTTTGTTTGTTTGCACGC
CTTCAAAAGATTTGTAAGTATTGTACGTTAAATCTTGGGATTTCACTCTC
TGATTCAATTTTCAAGAAGAATTGGATTTTCATCGTATAAAGGGGCTTAT
CGAATGGTAGTGTCGTTTATGAGAGTTTCTTGTCGACGGTGGCTTTCAAT
GTTGTCGAACAATAGGGCGTATCAAACAGAAGAACGTCCCATCTGGCGCA
CAACGTTGTTTCAACGTTCATCTAACGTTATATGGATGTTGTGAACGTTA
GATAAACGTTGAAACAACGTTGTGTGTCGCATTAGAGAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGCCCATGACCATTTTACAATATTCAACACACAAGCTTT
ATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTT
TCATCTGATGCTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTAA
GATTTCTAACCATTTGCGTATTTTTTTTAGGATGGACAAATCGAATTGTT
ATTGGTCGGTTGATGACGGTGTCACGTGGATAGGTAGTCTGAACAAATAT
ATGCTGCGCGCATCCCCTGAAATAGTTTGTAACATAAGGAAT Coding sequence (CDS) from alignment at sc0000198:457142..459233- >TCONS_00014817 ID=TCONS_00014817|Name=TCONS_00014817|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000198:457142..459233- (Clytia hemisphaerica)
GATGGACAAATCGAATTGTTATTGGTCGGTTGATGACGGTGTCACGTGGA
TAGGTAGTCTGAACAAATATATGCTGCGCGCATCCCCTGAAATAGTTTGT
AACATAAGGAATCTTTCCCACAAGACATAATGGACAAAATTTCCATGAAG
TCTATGCTGAAAATTTCCACTTCAAAAGGATCCACTTTGTTTGTTTGCAC
GCCTTCAAAAGATTTTCCATCCTTGGCTCAAATAACGTACTGAAACAATC
ATTAAACGAAGGAGGGCTCGATTATTTTGGGCTGACTAAAAATCAGACAT
TGACTCTCAACCGAGATGGTACAGCAAAGAGGTTTTCGTGTCTCACTGTC
AATGATGATGGCACGATCCGACAAAATATCGGTCCCTTCAAAGAAGATGT
TCCAATGGATTCCGCTTGTGGACAACTTTTCTCATTTTTACACGGATGGA
CAAATCGAATTGTTATTGGTCGGTTGATGACGGTGTCACGTGGATAGGTA
GTCTGAACAAATATATGCTGCGCGCATCCCCTGAAATAGTTTGTAACATA
AGGAATCTTTCCCACAAGACATAATGGACAAAATTTCCATGAAGTCTATG
CTGAAAATTTCCACTTCAAAAGGATCCACTTTGTTTGTTTGCACGCCTTC
AAAAGATTTTCCATCCTTGGCTCAAATAACGTACTGAAACAATCATTAAA
CGAAGGAGGGCTCGATTATTTTGGGCTGACTAAAAATCAGACATTGACTC
TCAACCGAGATGGTACAGCAAAGAGGTTTTCGTGTCTCACTGTCAATGAT
GATGGCACGATCCGACAAAATATCGGTCCCTTCAAAGAAGATGTTCCAAT
GGATTCCGCTTGTGGACAACTTTTCTCATTTTTACACGGATGGACAAATC
GAATTGTTATTGGTCGGTTGATGACGGTGTCACGTGGATAGGTAGTCTGA
ACAAATATATGCTGCGCGCATCCCCTGAAATAGTTTGTAACATAAGGAAT
CTTTCCCACAAGACATAATGGACAAAATTTCCATGAAGTCTATGCTGAAA
ATTTCCACTTCAAAAGGATCCACTTTGTTTGTTTGCACGCCTTCAAAAGA
TTTTCCATCCTTGGCTCAAATAACGTACTGAAACAATCATTAAACGAAGG
AGGGCTCGATTATTTTGGGCTGACTAAAAATCAGACATTGACTCTCAACC
GAGATGGTACAGCAAAGAGGTTTTCGTGTCTCACTGTCAATGATGATGGC
ACGATCCGACAAAATATCGGTCCCTTCAAAGAAGATGTTCCAATGGATTC
CGCTTGTGGACAACTTTTCTCATTTTTACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014817-exon-sc0000198-1575043694:459003..459233 | TCONS_00014817-exon-sc0000198-1575043694:459003..459233 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1575043694:458071..458173 | TCONS_00014817-exon-sc0000198-1575043694:458071..458173 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1575043694:457142..457253 | TCONS_00014817-exon-sc0000198-1575043694:457142..457253 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1510915933:459003..459233 | TCONS_00014817-exon-sc0000198-1510915933:459003..459233 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1510915933:458071..458173 | TCONS_00014817-exon-sc0000198-1510915933:458071..458173 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1510915933:457142..457253 | TCONS_00014817-exon-sc0000198-1510915933:457142..457253 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1491911889:459003..459233 | TCONS_00014817-exon-sc0000198-1491911889:459003..459233 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1491911889:458071..458173 | TCONS_00014817-exon-sc0000198-1491911889:458071..458173 | Clytia hemisphaerica | exon |
| TCONS_00014817-exon-sc0000198-1491911889:457142..457253 | TCONS_00014817-exon-sc0000198-1491911889:457142..457253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:457142..459233 - |
Blast
The following BLAST results are available for this feature:
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