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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014810 ID=TCONS_00014810|Name=TCONS_00014810|organism=Clytia hemisphaerica|type=transcript|length=2001bp
GTCAACACAGTTTTGTTAGTATGTCAACAACACTATATCCGGCCTGaact
catttttcttttctcaaGTGAGACTTGTGTTTATTTTCTGGTCTAAAGTA
CTTCAGTTTCCTTTTAAAGGAATCAGGTTGAAGAGGATCTCTATAAAAGC
TGGAGTGTTCGATCATTAGCAATATTAGTTGTTTATTTGTCATCGTGCTT
GTAGTTTGAAGGAAGATACTCATTTTAAAGCTAGAGATCGATAACGAGAG
AAGAAGACAAGAGACGAACGGAAACCAACAGCAATTTCCAAAGCATTAAA
GGATCGTTAATATTTATAATCGTGTTTTATAACAAAACGCAATCAATATG
CCTGTCATTGATCACTTCGTGAAACAGCACTTCGCGTCTACACACGTCAA
CAGCAAGGAGAAAGAATCAAGTATCTTAGACGGGATCACATCTTCACCTC
TCTTTACAGCTAAGCAACCAAAGCATCATCAAGAACAAGTAAAAACAACC
ATGGAGAAAGAAATCTTTGAACAAGTACACAGTCTACGACGCACAATGGA
AGGCAGAGTTGACTTCGAAAAGAAGAGTGTCTTTTTGAGTGAGTTAGACC
ATGGAACAAGTGACATTTTACGATGCAAACGTATCATCGTCATCGGGTCA
GGATCATCACATCACGTCGCAATCTCAACTCGACAATTAATGGAAGAAAT
GGTCGAGTTACCCGTATTCATCGAGTTGGCGAGTGATTTCCTCGACCGTG
AAGTGCCGATCTTCCGTAACGATGTTTGCATCTTTTTGAGTCAGTCAGGA
GAAACAACAAATGTCGTTGAATCATGCCGATACTGTCTTCAACACGAAGC
TCTCACGATTGCCGTCACAAATACAGCTGATAGCACCTTGGCTAAAATGT
CGAACTTTGTTTTGGACATTAACGCCGGTAAAGAACATGGGATCACAAGC
ACCAAGACGTACACAAGTCAATTCATGGCTATGACCCTTATCTCTTTACA
CTTAGCATACGACAAACGTCCCAAAGCAGAACGTATCGAATCAATCGTTG
AAGAAATGCAACATTTACCCGATAAAATCGCTACAGTGTTGGAAGCTACC
GAAAAATACCGTAAAACAGCTCTCTCTATGAAAGACGAGGAGAGTATACT
CGTCATGGGCCGCGGCTACCAACAAGGTACCTGCCATGAaggatctttca
aattcaaggAGGTAACAGGCACCCACTCGGAGGGTATCCACTCTGGTGAA
TTAAAGCATGGACCATTAGCTTTGATCGACGATCAAATCCCGATTATAAT
GATCGTAATGAGAGATAACATTTATGATAAATGTTGCAACGCCATTCAAC
AGGTGAAAGCAAGGGGCGGCCGCCCTGTGCTTATTTGCGAAAACGAAGAT
ACTGAAACACGTAAATGGGCGGATGTTGTTTTAGGTGTTCCAAAGACTAT
TGACTGTTTAGCTGGTATTTTAACTGTGATTCCTTTACAGTTATTATCTG
TGTATTTAGCAGAATCCATGAACAAGAATGTCGATCAACCACCAGCTCTG
GTGAAGACGGTGGTTGAGAAATTCATTCCCAATAACAGAATGAGTTAAAT
CTTTTgtgttattttgtttttgtaatttattgttttatatcatttttatt
attatttgacTTTTCGCACATGTTTTCATTGTGTTTTGTTATTGTCATCT
AAGTTGCATTTTGAACATGTCTTTTCAGCAATAAACTGAGCTGAGTCTGA
GCCAACGCTTCAAGATTTTTTACAGNaccaggtggtcgaaacttaacaaa
taaccaaCGCTTCAAGATTTTTTACAATGCATTTGTAGAAAAGCCAAAGT
AAACTTCAAGTCTAAAGCGACTAAAATGttcagaaattaaaatttgtaTA
TCAAACAGTTGTAAATATACGATATTCCATATACAAAATATGAATAcagt
ttttgtaatttttcaaaatttttgaagcgaaatatacaaggaaaaaagtt
a Run BLAST on NCBI transcript from alignment at sc0000198:323276..326397- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014810 ID=TCONS_00014810|Name=TCONS_00014810|organism=Clytia hemisphaerica|type=transcript|length=3122bp|location=Sequence derived from alignment at sc0000198:323276..326397- (Clytia hemisphaerica)
GTCAACACAGTTTTGTTAGTATGTCAACAACACTATATCCGGCCTGAACT
CATTTTTCTTTTCTCAAGTGAGACTTGTGTTTATTTTCTGGTCTAAAGTA
CTTCAGTTTCCTTTTAAAGGAATCAGGTTGAAGAGGATCTCTATAAAAGC
TGGAGTGTTCGATCATTAGCAATATTAGTTGTTTATTTGTCATCGTGCTT
GTAGTTTGAAGGAAGATACTCATTTTAAAGCTAGGTAAGCAGTTCCTTAC
ACCATTCGTTTACTTTCTTATGACATATAGCTGCTGAGTGTTAAGAGTTA
GTACTTACTTGACTTTCGGTGTAGTCTGTAAGTAAGGACATTCCGGTTAG
AGGAGAGAAGATTCGCCATCTACTGCAGACACAACGTTCATACCTAATTA
ATGACTGGCACAAAGATCATATCAGCTAGCTTTCAGCCTGGGCTTTCGGC
GAACACAGTCAAACAAAGCTTCGAAAGCTCTTTATCTTTTATATCGAAAA
CTATTGGAGACTATGTATAATTTGTGTGCAAATCGAGTTATTCTCGGCGA
AGTGAAGGCAGTTTTTTAAAGTCACTTTTTATTGATGAGAATGTTATAAT
TACTACTATTCTATTCCTGGACATCCGAAGTAACCTCAATTGTATAATAC
CAGTTTTAGAAGTTATTTTAGACGCAGTGATTATCTTTCAAAATAAATCT
AACTTGAGCGGTCATCAGTTCTTAGCAAAACACATGTTGATTATGAATGT
TAATTGAGTTTATACAGCTCGTATATAACTCTATTTCAACGTTCACTGAT
ATCAGGTGATTATATGCTTCCCTAGCGTTTTGTACTGGCTAGGGAAACCG
ACTAGATTCTAATGTTTTAAGTTTTACTGGGCATCTTTTTACATTCGACA
CTGTAATATATTACGAAAATACTTTGTCAATCAATCATCTTTTTATTATT
GAGTACGTCATAAATCAATAAAACTATTTCTCAATTCCTCGTGAGATTCA
CTTACTAATGATCAGTTTTTCGCAAAAAAATGTCAAAAACAATAATTTAT
AGACGATGAAACTGTTGGGTGCGTCAACTAAGAAACTCTCCAATTTAATT
ATAGACGGAAATCTAATATAGGACTCAAATTATAAAAGGAAAAAATGTAT
CGCATTTTTTGTTATATTTAAATGCCTGTCTTACATAATTGAAATCTAAT
GATCAAAATAATATCCTGTTAATGATTAACTTGATCGCTGATTGGTTCAT
TAGAAAGGAAAGTAGCCAATCATTGGGCTTGCTTTTGATATTGTAATTGA
TGATTTCAGAAACATTTAAATAATTTGAAATTGTTTCCTTTTTTCTTTAT
AACAGAGATCGATAACGAGAGAAGAAGACAAGAGACGAACGGAAACCAAC
AGCAATTTCCAAAGCATTAAAGGATCGTTAATATTTATAATCGTGTTTTA
TAACAAAACGCAATCAATATGCCTGTCATTGATCACTTCGTGAAACAGCA
CTTCGCGTCTACACACGTCAACAGCAAGGAGAAAGAATCAAGTATCTTAG
ACGGGATCACATCTTCACCTCTCTTTACAGCTAAGCAACCAAAGCATCAT
CAAGAACAAGTAAAAACAACCATGGAGAAAGAAATCTTTGAACAAGTACA
CAGTCTACGACGCACAATGGAAGGCAGAGTTGACTTCGAAAAGAAGAGTG
TCTTTTTGAGTGAGTTAGACCATGGAACAAGTGACATTTTACGATGCAAA
CGTATCATCGTCATCGGGTCAGGATCATCACATCACGTCGCAATCTCAAC
TCGACAATTAATGGAAGAAATGGTCGAGTTACCCGTATTCATCGAGTTGG
CGAGTGATTTCCTCGACCGTGAAGTGCCGATCTTCCGTAACGATGTTTGC
ATCTTTTTGAGTCAGTCAGGAGAAACAACAAATGTCGTTGAATCATGCCG
ATACTGTCTTCAACACGAAGCTCTCACGATTGCCGTCACAAATACAGCTG
ATAGCACCTTGGCTAAAATGTCGAACTTTGTTTTGGACATTAACGCCGGT
AAAGAACATGGGATCACAAGCACCAAGACGTACACAAGTCAATTCATGGC
TATGACCCTTATCTCTTTACACTTAGCATACGACAAACGTCCCAAAGCAG
AACGTATCGAATCAATCGTTGAAGAAATGCAACATTTACCCGATAAAATC
GCTACAGTGTTGGAAGCTACCGAAAAATACCGTAAAACAGCTCTCTCTAT
GAAAGACGAGGAGAGTATACTCGTCATGGGCCGCGGCTACCAACAAGGTA
CCTGCCATGAAGGATCTTTCAAATTCAAGGAGGTAACAGGCACCCACTCG
GAGGGTATCCACTCTGGTGAATTAAAGCATGGACCATTAGCTTTGATCGA
CGATCAAATCCCGATTATAATGATCGTAATGAGAGATAACATTTATGATA
AATGTTGCAACGCCATTCAACAGGTGAAAGCAAGGGGCGGCCGCCCTGTG
CTTATTTGCGAAAACGAAGATACTGAAACACGTAAATGGGCGGATGTTGT
TTTAGGTGTTCCAAAGACTATTGACTGTTTAGCTGGTATTTTAACTGTGA
TTCCTTTACAGTTATTATCTGTGTATTTAGCAGAATCCATGAACAAGAAT
GTCGATCAACCACCAGCTCTGGTGAAGACGGTGGTTGAGAAATTCATTCC
CAATAACAGAATGAGTTAAATCTTTTGTGTTATTTTGTTTTTGTAATTTA
TTGTTTTATATCATTTTTATTATTATTTGACTTTTCGCACATGTTTTCAT
TGTGTTTTGTTATTGTCATCTAAGTTGCATTTTGAACATGTCTTTTCAGC
AATAAACTGAGCTGAGTCTGAGCCAACGCTTCAAGATTTTTTACAGNACC
AGGTGGTCGAAACTTAACAAATAACCAACGCTTCAAGATTTTTTACAATG
CATTTGTAGAAAAGCCAAAGTAAACTTCAAGTCTAAAGCGACTAAAATGT
TCAGAAATTAAAATTTGTATATCAAACAGTTGTAAATATACGATATTCCA
TATACAAAATATGAATACAGTTTTTGTAATTTTTCAAAATTTTTGAAGCG
AAATATACAAGGAAAAAAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014810-exon-sc0000198-1575043694:326164..326397 | TCONS_00014810-exon-sc0000198-1575043694:326164..326397 | Clytia hemisphaerica | exon |
| TCONS_00014810-exon-sc0000198-1575043694:323276..325042 | TCONS_00014810-exon-sc0000198-1575043694:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014810-exon-sc0000198-1510915933:326164..326397 | TCONS_00014810-exon-sc0000198-1510915933:326164..326397 | Clytia hemisphaerica | exon |
| TCONS_00014810-exon-sc0000198-1510915933:323276..325042 | TCONS_00014810-exon-sc0000198-1510915933:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014810-exon-sc0000198-1491911889:326164..326397 | TCONS_00014810-exon-sc0000198-1491911889:326164..326397 | Clytia hemisphaerica | exon |
| TCONS_00014810-exon-sc0000198-1491911889:323276..325042 | TCONS_00014810-exon-sc0000198-1491911889:323276..325042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:323276..326397 - |
Blast
BLAST of TCONS_00014810 vs. Swiss-Prot (Human)
Match: GFPT2 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3) HSP 1 Score: 378.637 bits (971), Expect = 1.271e-120 Identity = 180/354 (50.85%), Postives = 248/354 (70.06%), Query Frame = 3
Query: 501 MEKEIFEQVHSLRRTMEGRVDFEKKSVFLSELDHGTSDILRCKRIIVIGSGSSHHVAISTRQLMEEMVELPVFIELASDFLDREVPIFRNDVCIFLSQSGETTNVVESCRYCLQHEALTIAVTNTADSTLAKMSNFVLDINAGKEHGITSTKTYTSQFMAMTLISLHLAYDKRPKAERIESIVEEMQHLPDKIATVLEATEKYRKTALSMKDEESILVMGRGYQQGTCHEGSFKFKEVTGTHSEGIHSGELKHGPLALIDDQIPIIMIVMRDNIYDKCCNAIQQVKARGGRPVLICENEDTETRKWADVVLGVPKTIDCLAGILTVIPLQLLSVYLAESMNKNVDQPPALVKTV 1562
M+KEIFEQ S+ TM GRV+FE +V L L +I RC+R+IVIG G+S+H A++TRQ++EE+ ELPV +ELASDFLDR P+FR+DVC F+SQSGET + + + RYC ALT+ VTNT S++++ ++ + INAG E G+ STK YTSQF+++ + L ++ D+ R + I+ ++ LP+ I VL EK AL + + S+LVMGRGY TC EG+ K KE+T HSEGI +GELKHGPLALID Q+P+IM++M+D + KC NA+QQV AR GRP+++C +DTE+ K+A + +P T+DCL GIL+VIPLQLLS +LA +VD P L K+V
Sbjct: 326 MQKEIFEQPESVFNTMRGRVNFETNTVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSKFAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSV 679
The following BLAST results are available for this feature:
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