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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014796 ID=TCONS_00014796|Name=TCONS_00014796|organism=Clytia hemisphaerica|type=transcript|length=2228bpRun BLAST on NCBI protein sequence of TCONS_00014796-protein >TCONS_00014796-protein ID=TCONS_00014796-protein|Name=TCONS_00014796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MIWPAIFGIFYFHFFSNVHCITKDPTVLVAINSRNDEHLLPTFFGYLEKLRun BLAST on NCBI transcript from alignment at sc0000198:30626..54191- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014796 ID=TCONS_00014796|Name=TCONS_00014796|organism=Clytia hemisphaerica|type=transcript|length=23566bp|location=Sequence derived from alignment at sc0000198:30626..54191- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000198:30626..54191- >TCONS_00014796 ID=TCONS_00014796|Name=TCONS_00014796|organism=Clytia hemisphaerica|type=CDS|length=24906bp|location=Sequence derived from alignment at sc0000198:30626..54191- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014796 vs. Swiss-Prot (Human)
Match: GT252 (Procollagen galactosyltransferase 2 OS=Homo sapiens GN=COLGALT2 PE=1 SV=1) HSP 1 Score: 387.882 bits (995), Expect = 5.750e-124 Identity = 219/551 (39.75%), Postives = 321/551 (58.26%), Query Frame = 1
Query: 232 KDPTVLVAINSRNDEHLLPTFFGYLEKLEYPKTRISILIQTDHNEDDTYELLSTWSTNVRHLYHKIQVSHKAEPLVYSDAQNSNHFTEQRYLMLLQLRQNAIQEARSQWADYVFFIDTDNFLTDPEILQHLIKERRTVIAPLLRATHPKETLYSNFWGETDKNGYYKRSENYPLILSQTTKGTFRVPMIHSAILIHLRDSNTDDIQLSPVPASYKGMIDDLLIFAFVIQKIAKLKFHICNKYTFGFMLVPSDAKLSLNDRRLQFTDAFVRKISEAHGEEIVRSPNIPHRF----PK-PTFAEFEEIFVINLKRRKNRFLHMRNSMRELGLKWTHFEAVDGNNLNKEWMEDLGVKPLTDYKDPTFNSSYVFRPITRGDVGCFLSHYYVWQEMVERNLDEVLILEDDVRFVSNFRKKLTKLMKTASSLEMKPEKDWDLLYLGREAKQTSESYVGETD-KTLIFPKHSNWAIGYVLRLSGARKLLAGGEGFAKMVPVDEYLTIKFNKHEDKVLMKQYDTRDLIAISATNHLIEPTHLPMQDGYYSDTKNSLLID 1866
+ PTVLVA+ +RN H LP F G LE+L+YPK+R++I TDHN D+T E+ W NV+ LYH ++ EP Y D H+ R+ +++LRQ A++ AR +W+DY+ FID DNFLT+P+ L LI E +T++AP+L + LYSNFW G+YKR+ +Y I G F VPM+HS LI LR +D + P Y DD+++FAF ++ A ++ ++CN+ +G++ +P +L + + + I R P P ++ PK P F+EIF+INLKRRK+R M ++ E ++ EAVDG LN ++ L ++ L Y+DP Y RP+TRG++GCFLSHY VW+E+++R L++ L++EDDVRF F+KKL KLM ++ DW+L+Y+GR+ Q E + L+ +S W +GYV+ L GA+KL+ G F KM+PVDE+L + +NKH + Y++RDL A SA LI PTH Q GY SDT+ S + D
Sbjct: 51 QSPTVLVAVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEIFREWLKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILFIDVDNFLTNPQTLNLLIAENKTIVAPMLES----RGLYSNFWCGITPKGFYKRTPDYVQIREWKRTGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTFDDIIVFAFSSRQ-AGIQMYLCNREHYGYLPIPLKPHQTLQEDIENLIHVQIEAM-------IDRPPMEPSQYVSVVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDP-----YSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQL----DWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLV-GANPFGKMLPVDEFLPVMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWD 579 The following BLAST results are available for this feature:
BLAST of TCONS_00014796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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