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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014794 ID=TCONS_00014794|Name=TCONS_00014794|organism=Clytia hemisphaerica|type=transcript|length=1048bp
gcaagtattatagaaaaataaaataagagcCTATTGAAacgaaaacaaaa
tggcggatgaTGAATTCGAAATTGGTATTGCTTCAGaagatGATTATGGT
CCCGAGTATCCGGCATTTTCACTATCAGTAAAAGAAACGGATACCATTGg
tcacatcaaaacaaaaatcgaaGAACGTATCAAAGTGCCGAGTCAGCATT
TTTATGTACGAAAACGTGGAATGATAGAggttgaaaatgagaaaacgGTG
AGTGATTATCTCCAGGATGGGGAAAAGGAATATATggagtttgttttgat
atacaTTCCACAATTTTTAATTCGTGTATGTTTCACACGGAGTGGTCATG
TTGAAGAACAAACTGTACTACTAACTGAAAAACATCGTAAGAATCTTGGT
GATTTAGtcacagagattgagaaaaaatataaacttAAGAAAGGTGAATT
GAAATATGTTCATCAAGAGTCTGATAGTTCATCGGATGAAACAAATGATG
ACGTATATACAAAATGGTTGATGAATTTGTGGCGAGAGAGgaaatatgtt
ttgaattttgaaacagaCGCAAATGTCGAAGACAAGAAATGCTTGGTGAT
GTgatattttgaaagtaaaatggTAGATACATCAATGATcgttttgaaat
atattgagactttaaaacactttttaaaaGGTAAATAGAAACATTTGACT
GTCGTCTTACAAAATGCACTTTTAAAAACAACATGTCTTCTATAAAAACT
CGGACTatatgaaatgttttttgataGTTTGATGAATCATAAAGTTATTG
CATAAATCATACTATGGTAAGTCTCTCATTTATTCGTCGAATTTTAAGAA
CCCTTTCTGGTGATGGCTATGGGAGATGTTTCCATTCAATATTCATAAGA
AGCATATTATAAGAGAAGAATTACCGTGGATGTTGAGGAGGGCATTTTTT
TTGTCCAAGGGACcccctttttggacctacctccgggtgccccggtggag
gttctataaattaacccatgtccgttcgtccgttcgtccgttcgtccg Run BLAST on NCBI protein sequence of TCONS_00014794-protein >TCONS_00014794-protein ID=TCONS_00014794-protein|Name=TCONS_00014794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MADDEFEIGIASEDDYGPEYPAFSLSVKETDTIGHIKTKIEERIKVPSQH
FYVRKRGMIEVENEKTVSDYLQDGEKEYMEFVLIYIPQFLIRVCFTRSGH
VEEQTVLLTEKHRKNLGDLVTEIEKKYKLKKGELKYVHQESDSSSDETND
DVYTKWLMNLWRERKYVLNFETDANVEDKKCLVM Run BLAST on NCBI transcript from alignment at sc0000198:391290..392910+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014794 ID=TCONS_00014794|Name=TCONS_00014794|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at sc0000198:391290..392910+ (Clytia hemisphaerica)
gcaagtattatagaaaaataaaataagagcCTATTGAAacgaaaacaaaa
tggcggatgaTGAATTCGAAATTGGTATTGCTTCAGGTatgttattttct
tctttttttttaacttaagATCTGGTagtttttaaagggacataaaagta
ctgacgaaatttgtaaacaaactgtatgtagcgggatacaaaatcaaaac
aaatgctacatgtcaaaatcaaaaatcaaaccaaatatggctgattttga
ttgtttcaattgttgtttcaagtttgttttggacacgtggttttaattgt
tctctttaatgacatgtggttcgcgcaatgtttacattttactattttta
tgtccctttaaaaaggAGATTTTCAGTTATTTTGGAGTGTTTGAAATGTG
ATTGTGACGGATATGGTTAccacaaaaacttttttggtaACAGATTTCCC
TCAAGATTTACTAAGTATTTGAATggagaattaaaatttttaacacGAAT
TCTCCTAAAATTATGCTAAAAGTTTGAATATTTTCCTAAATTTAATATTA
GCCAAAATTTATGCTAACATTCCTCCTAAAATCTTGCTTTTCAGGCTTTG
GAGGCCTAAAAAACAAAGAGAtgcttaaaaaatcttgaataagctttttt
catttttagaagatGATTATGGTCCCGAGTATCCGGCATTTTCACTATCA
GTAAAAGAAACGGATACCATTGgtcacatcaaaacaaaaatcgaaGAACG
TATCAAAGTGCCGAGTCAGCATTTTTATGTACGAAAACGTGGAATGATAG
AggttgaaaatgagaaaacgGTGAGTGATTATCTCCAGGATGGGGAAAAG
GAATATATggagtttgttttgatatacaTTCCACAATTTTTAATTCGTGT
ATGTTTCACACGGAGTGGTCATGTTGAAGAACAAACTGTACTACTAACTG
AAAAACATCGTAAGAATCTTGGTGATTTAGtcacagagattgagaaaaaa
tataaacttAAGAAAGGTGAATTGAAATATGTTCATCAAGAGTCTGATAG
TTCATCGGATGAAACAAATGATGACGTATATACAAAATGGTTGATGAATT
TGTGGCGAGAGAGgaaatatgttttgaattttgaaacagaCGCAAATGTC
GAAGACAAGAAATGCTTGGTGATGTgatattttgaaagtaaaatggTAGA
TACATCAATGATcgttttgaaatatattgagactttaaaacactttttaa
aaGGTAAATAGAAACATTTGACTGTCGTCTTACAAAATGCACTTTTAAAA
ACAACATGTCTTCTATAAAAACTCGGACTatatgaaatgttttttgataG
TTTGATGAATCATAAAGTTATTGCATAAATCATACTATGGTAAGTCTCTC
ATTTATTCGTCGAATTTTAAGAACCCTTTCTGGTGATGGCTATGGGAGAT
GTTTCCATTCAATATTCATAAGAAGCATATTATAAGAGAAGAATTACCGT
GGATGTTGAGGAGGGCATTTTTTTTGTCCAAGGGACcccctttttggacc
tacctccgggtgccccggtggaggttctataaattaacccatgtccgttc
gtccgttcgtccgttcgtccg Coding sequence (CDS) from alignment at sc0000198:391290..392910+ >TCONS_00014794 ID=TCONS_00014794|Name=TCONS_00014794|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000198:391290..392910+ (Clytia hemisphaerica)
atggcggatgaTGAATTCGAAATTGGTATTGCTTCAGaagatGATTATGG
TCCCGAGTATCCGGCATTTTCACTATCAGTAAAAGAAACGGATACCATTG
gtcacatcaaaacaaaaatcgaaGAACGTATCAAAGTGCCGAGTCAGCAT
TTTTATGTACGAAAACGTGGAATGATAGAggttgaaaatgagaaaacgGT
GAGTGATTATCTCCAGGATGGGGAAAAGGAATATATggagtttgttttga
tatacaTTCCACAATTTTTAATTCGTGTATGTTTCACACGGAGTGGTCAT
GTTGAAGAACAAACTGTACTACTAACTGAAAAACATCGTAAGAATCTTGG
TGATTTAGtcacagagattgagaaaaaatataaacttAAGAAAGGTGAAT
TGAAATATGTTCATCAAGAGTCTGATAGTTCATCGGATGAAACAAATGAT
GACGTATATACAAAATGGTTGATGAATTTGTGGCGAGAGAGgaaatatgt
tttgaattttgaaacagaCGCAAATGTCGAAGACAAGAAATGCTTGGTGA
TGTgaatggcggatgaTGAATTCGAAATTGGTATTGCTTCAGaagatGAT
TATGGTCCCGAGTATCCGGCATTTTCACTATCAGTAAAAGAAACGGATAC
CATTGgtcacatcaaaacaaaaatcgaaGAACGTATCAAAGTGCCGAGTC
AGCATTTTTATGTACGAAAACGTGGAATGATAGAggttgaaaatgagaaa
acgGTGAGTGATTATCTCCAGGATGGGGAAAAGGAATATATggagtttgt
tttgatatacaTTCCACAATTTTTAATTCGTGTATGTTTCACACGGAGTG
GTCATGTTGAAGAACAAACTGTACTACTAACTGAAAAACATCGTAAGAAT
CTTGGTGATTTAGtcacagagattgagaaaaaatataaacttAAGAAAGG
TGAATTGAAATATGTTCATCAAGAGTCTGATAGTTCATCGGATGAAACAA
ATGATGACGTATATACAAAATGGTTGATGAATTTGTGGCGAGAGAGgaaa
tatgttttgaattttgaaacagaCGCAAATGTCGAAGACAAGAAATGCTT
GGTGATGTga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014794-exon-sc0000198-1491911889:391290..391375 | TCONS_00014794-exon-sc0000198-1491911889:391290..391375 | Clytia hemisphaerica | exon |
| TCONS_00014794-exon-sc0000198-1510915933:391290..391375 | TCONS_00014794-exon-sc0000198-1510915933:391290..391375 | Clytia hemisphaerica | exon |
| TCONS_00014794-exon-sc0000198-1575043694:391290..391375 | TCONS_00014794-exon-sc0000198-1575043694:391290..391375 | Clytia hemisphaerica | exon |
| TCONS_00014794-exon-sc0000198-1491911889:391949..392910 | TCONS_00014794-exon-sc0000198-1491911889:391949..392910 | Clytia hemisphaerica | exon |
| TCONS_00014794-exon-sc0000198-1510915933:391949..392910 | TCONS_00014794-exon-sc0000198-1510915933:391949..392910 | Clytia hemisphaerica | exon |
| TCONS_00014794-exon-sc0000198-1575043694:391949..392910 | TCONS_00014794-exon-sc0000198-1575043694:391949..392910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:391290..392910 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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