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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014780 ID=TCONS_00014780|Name=TCONS_00014780|organism=Clytia hemisphaerica|type=transcript|length=1811bp
NTAGGTTTCTTCACCTTTTGGTTTTGCTTTTTATCTGTCTTTAATGTGAA
TGTGTATTGTTTAGAACAGGGAAAATGCGAGCATCGCTGCTTCTTGTCTT
CCTGGCTTCGATAGttttggtcAAAGCTTCGAATTTCCGTTATGCGCATG
CACCAAGAGAATACAAAGTTCCCGGTCAACCGGAGTTCCACAACAAACGA
gatgaaattcaatggaaactAAACTACGCTCAAAAGACACTTGCTAAAGC
cagagaaattgaaaaattagctAAAAAAGCAGCCGTTCATTTTGGATATT
ATGATGGGAATAAATCCGGACATAGCACAGTGAAAAGCATTATCGGACAG
GCTCAAGATGTTTTAATGGACGCTTCAGATAAAATAGGATACTCTtacga
aaaattttaaatcaattcggacattgattattttgaaactgTGCCATGCT
GTTTATTATGTGTTGTAACTTTAAAGCAAATACGAAGGAAGATGCCGATA
TTGTCAAAGAATAGCTGACTTGCTGCCAATAAACTGCAATTCGGTCATTT
GAAGTATTTTATACTTTTGGACTCTATTGACATCTTTATTATTATAAAGA
ATACGGTTTCAAGCCCGCGTATATCCTCTCTAAACCAATCTAGCAATAGA
TCTTTTTAATTTcagacgacggtaaaaacaccaaaataccgccctctgtt
taggtgagcaaagacgatatagagccgtacatcaactattgactttgttt
tgtatcatttcacttaccgtcgccctcgatatcctccgatacgtAAACTC
GGTAATCACTGCCCGACGATAGTACTTCATTTCTCACATCGGCTATCTTT
CGTAACTCTCTCACTCTATCCCTCTCCATTTTAATCAAATCATCTGTTAT
ACTGATCATGTCGTATTTCTGATGTTTTTTCAATTCCGTCAGTCTCGTGA
ATCTGTATTTCCATCATTGAAAATGTTCCATGCTTCCTCTGTTCTTCTAC
TTACTCTTCTACTTTTTCGCTCCGAATCAATActttatattttgaatatt
tatttctCTGTGTGTTCTCGTGACCTCAGCAAAACTTTTTATTGATTGGC
CACTCcttgtttggtcatttttggcATTTACTGCATTTCAATTTTTGTGG
TCAATTTCTTTTCCAAGATTACATTTTTTCCAGTGCCTAGGGGTTTTTAA
GGTTAGTGACAATTGGGTCTTTTCCCGAAGGGATCACTCAGGCAAAATAG
GATACGGGGACGCACCGCTGGTTAGGTTCCCTTTctcaagttttgaaaat
atcttaCATGATCACTGAATATTGGAAGTTTTATCTGGCAAGGTTGACTT
TTGTTTGGACGTTGCCACCAATTATCAGGGTTGGCTTTAGAAAGTGTTgc
atctgacagggtccataTTTGGTTGAACCTTTTTCGATGGGAAAATCACT
CGGGTCAGTCACTCTCTCACTTCTAGGTTCTTCCTTTTCAATTTCTGATT
TGACTTTAATTTCTATGATTAgtcattaattttttggatTCACCAAAAAA
CATGATATAaagaaacaatttcaaaattttgatatataCTGTAAGCTTAG
CTAAGGATTTACGAATTAGTCATATttctatgtaaaaaaatgacgctcaa
aatttaaaaggatTTAACAAAAGACATTCCTCTACGTAACTTCTATATAC
TCAAGGCGCAAAGGGGGTccagtttaatttttccatttCCCAATAGGAAA
TTTTTAAATGAACTTTAGTTAAggaactaaaataaaaactattTCAACAA
Ttatatcacag Run BLAST on NCBI protein sequence of TCONS_00014780-protein >TCONS_00014780-protein ID=TCONS_00014780-protein|Name=TCONS_00014780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MRASLLLVFLASIVLVKASNFRYAHAPREYKVPGQPEFHNKRDEIQWKLN
YAQKTLAKAREIEKLAKKAAVHFGYYDGNKSGHSTVKSIIGQAQDVLMDA
SDKIGYSYEKF Run BLAST on NCBI transcript from alignment at sc0000198:336277..338282+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014780 ID=TCONS_00014780|Name=TCONS_00014780|organism=Clytia hemisphaerica|type=transcript|length=2006bp|location=Sequence derived from alignment at sc0000198:336277..338282+ (Clytia hemisphaerica)
NTAGGTTTCTTCACCTTTTGGTTTTGCTTTTTATCTGTCTTTAATGTGAA
TGTGTATTGTTTAGAACAGGGAAAATGCGAGCATCGCTGCTTCTTGTCTT
CCTGGCTTCGATAGGTATGTATTGTGTCATACTTTTGCAAAccaaaactt
tcgcgatttgCGCGTGTTTTGGTCTTTTTCAACCTTTTGGAGCGATTTTA
TACTTTAATGAACATTCCTCGGGTAGATACAGGCTACTTTCAATTAAACA
TTTAATGTTTATAACCTACATAAATGGTTTAATCGACtttctgtgtttgt
tttttttagttttggtcAAAGCTTCGAATTTCCGTTATGCGCATGCACCA
AGAGAATACAAAGTTCCCGGTCAACCGGAGTTCCACAACAAACGAgatga
aattcaatggaaactAAACTACGCTCAAAAGACACTTGCTAAAGCcagag
aaattgaaaaattagctAAAAAAGCAGCCGTTCATTTTGGATATTATGAT
GGGAATAAATCCGGACATAGCACAGTGAAAAGCATTATCGGACAGGCTCA
AGATGTTTTAATGGACGCTTCAGATAAAATAGGATACTCTtacgaaaaat
tttaaatcaattcggacattgattattttgaaactgTGCCATGCTGTTTA
TTATGTGTTGTAACTTTAAAGCAAATACGAAGGAAGATGCCGATATTGTC
AAAGAATAGCTGACTTGCTGCCAATAAACTGCAATTCGGTCATTTGAAGT
ATTTTATACTTTTGGACTCTATTGACATCTTTATTATTATAAAGAATACG
GTTTCAAGCCCGCGTATATCCTCTCTAAACCAATCTAGCAATAGATCTTT
TTAATTTcagacgacggtaaaaacaccaaaataccgccctctgtttaggt
gagcaaagacgatatagagccgtacatcaactattgactttgttttgtat
catttcacttaccgtcgccctcgatatcctccgatacgtAAACTCGGTAA
TCACTGCCCGACGATAGTACTTCATTTCTCACATCGGCTATCTTTCGTAA
CTCTCTCACTCTATCCCTCTCCATTTTAATCAAATCATCTGTTATACTGA
TCATGTCGTATTTCTGATGTTTTTTCAATTCCGTCAGTCTCGTGAATCTG
TATTTCCATCATTGAAAATGTTCCATGCTTCCTCTGTTCTTCTACTTACT
CTTCTACTTTTTCGCTCCGAATCAATActttatattttgaatatttattt
ctCTGTGTGTTCTCGTGACCTCAGCAAAACTTTTTATTGATTGGCCACTC
cttgtttggtcatttttggcATTTACTGCATTTCAATTTTTGTGGTCAAT
TTCTTTTCCAAGATTACATTTTTTCCAGTGCCTAGGGGTTTTTAAGGTTA
GTGACAATTGGGTCTTTTCCCGAAGGGATCACTCAGGCAAAATAGGATAC
GGGGACGCACCGCTGGTTAGGTTCCCTTTctcaagttttgaaaatatctt
aCATGATCACTGAATATTGGAAGTTTTATCTGGCAAGGTTGACTTTTGTT
TGGACGTTGCCACCAATTATCAGGGTTGGCTTTAGAAAGTGTTgcatctg
acagggtccataTTTGGTTGAACCTTTTTCGATGGGAAAATCACTCGGGT
CAGTCACTCTCTCACTTCTAGGTTCTTCCTTTTCAATTTCTGATTTGACT
TTAATTTCTATGATTAgtcattaattttttggatTCACCAAAAAACATGA
TATAaagaaacaatttcaaaattttgatatataCTGTAAGCTTAGCTAAG
GATTTACGAATTAGTCATATttctatgtaaaaaaatgacgctcaaaattt
aaaaggatTTAACAAAAGACATTCCTCTACGTAACTTCTATATACTCAAG
GCGCAAAGGGGGTccagtttaatttttccatttCCCAATAGGAAATTTTT
AAATGAACTTTAGTTAAggaactaaaataaaaactattTCAACAATtata
tcacag Coding sequence (CDS) from alignment at sc0000198:336277..338282+ >TCONS_00014780 ID=TCONS_00014780|Name=TCONS_00014780|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000198:336277..338282+ (Clytia hemisphaerica)
ATGCGAGCATCGCTGCTTCTTGTCTTCCTGGCTTCGATAGttttggtcAA
AGCTTCGAATTTCCGTTATGCGCATGCACCAAGAGAATACAAAGTTCCCG
GTCAACCGGAGTTCCACAACAAACGAgatgaaattcaatggaaactAAAC
TACGCTCAAAAGACACTTGCTAAAGCcagagaaattgaaaaattagctAA
AAAAGCAGCCGTTCATTTTGGATATTATGATGGGAATAAATCCGGACATA
GCACAGTGAAAAGCATTATCGGACAGGCTCAAGATGTTTTAATGGACGCT
TCAGATAAAATAGGATACTCTtacgaaaaattttaaATGCGAGCATCGCT
GCTTCTTGTCTTCCTGGCTTCGATAGttttggtcAAAGCTTCGAATTTCC
GTTATGCGCATGCACCAAGAGAATACAAAGTTCCCGGTCAACCGGAGTTC
CACAACAAACGAgatgaaattcaatggaaactAAACTACGCTCAAAAGAC
ACTTGCTAAAGCcagagaaattgaaaaattagctAAAAAAGCAGCCGTTC
ATTTTGGATATTATGATGGGAATAAATCCGGACATAGCACAGTGAAAAGC
ATTATCGGACAGGCTCAAGATGTTTTAATGGACGCTTCAGATAAAATAGG
ATACTCTtacgaaaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014780-exon-sc0000198-1491911889:336277..336390 | TCONS_00014780-exon-sc0000198-1491911889:336277..336390 | Clytia hemisphaerica | exon |
| TCONS_00014780-exon-sc0000198-1510915933:336277..336390 | TCONS_00014780-exon-sc0000198-1510915933:336277..336390 | Clytia hemisphaerica | exon |
| TCONS_00014780-exon-sc0000198-1575043694:336277..336390 | TCONS_00014780-exon-sc0000198-1575043694:336277..336390 | Clytia hemisphaerica | exon |
| TCONS_00014780-exon-sc0000198-1491911889:336586..338282 | TCONS_00014780-exon-sc0000198-1491911889:336586..338282 | Clytia hemisphaerica | exon |
| TCONS_00014780-exon-sc0000198-1510915933:336586..338282 | TCONS_00014780-exon-sc0000198-1510915933:336586..338282 | Clytia hemisphaerica | exon |
| TCONS_00014780-exon-sc0000198-1575043694:336586..338282 | TCONS_00014780-exon-sc0000198-1575043694:336586..338282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:336277..338282 + |
Blast
The following BLAST results are available for this feature:
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