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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014748 ID=TCONS_00014748|Name=TCONS_00014748|organism=Clytia hemisphaerica|type=transcript|length=1615bp
cggagttttatttagtcgggtttttttttcgtcgggtgaaaatttcgtca
cccactcaaaattttcgtcactttcccccgacattttttcccccgataag
gtatgtaaCTATAATTATGAACTTTTTTAGGGAATGAAAATAACAAATAA
ATGTACACCACAGACATTAATTGTTTAACACGCCACCAACATGCACGCAT
TAGCAGCCGGTTCCATTGGTAACAGCGAGTTGCCAAGACGGTACAGGACC
AGCAGATTCAACCTGAATGTAAGTTCACCGCAAGGCTCCGTAGCAAGCGA
ACAGAAAAACACCGGAAAACCCAAAATTGTCATCAATATTAGTGGAATGA
TTTTCGAAACTTACGCATCGACTTTAAATAAATATCCGGATACCTTACTC
GGAACACCCTTAAAGCGGTCACTCATTACGGACAGGCGTACTAAACAGAT
CTACCTGGAGCGGAATCGAAATTCATTTGACGCGATACTCTTTTATTACC
AAAGCAGTGGATGTTTAATACGACCTAGTAACGTCTCCATGATAGATTTT
GAAGAAGAGTGTGCTTATTTTGATCTACCGCAAGATGCAGTTAAAAGAAT
GAAATGCAGAGATGGATTTTTACACAAACGAGAAACGAAACTACCCGGTT
ATAAATATTACCGTGATTTCCAATATACATTATGGCAGTTTTTTGAATTc
ccaaaagaatttaaaaatcggTCAGCTATGGtgtattttgtattttcttt
cgCATTAATTTTTGCTTCGATCGCAATATTTTGcgtggaaagtgaaattt
tgttaTTAAATTGGAAGAGTGCTCGTTTGAAGGAATATTATTACATACAG
CAATCAATAGAACTCGCATTGAATGTTTACTTTGCTATGGAACTTCTGGC
AAGGTTTTTTGCTACACCTATTAAGAAACGATTCTTCGAGAAAATACTCA
ACAACATTGAAATAACTTCTGTTATATTATTCCTAGGTGCGATATGGTTA
CCATCTCATTTCGTAACTAAATGGGCTATCAATTTATCACGGATTCTCCG
TGCGTTTAGAATATCACGTTTGGCACGCATGTCTGCAATGATAAAAACTT
CTATTCTAGTATTTAAAAGTTCAGTGAATGATATTCTAGCAGTTTGGTTT
ACAATTCTAATAATTTGTGTTTTATGTGGAAGCACTATGTACTATGTTGA
AATGTCGGAGCCTGGGACCAACTTTACTAGTATCCCAATGTCCATGTGGT
GGGCAATGCAGACAGTCTTGTGTCTGGGGTACGGGGACATTGTTCCTACC
TCAGTACCAGGGAAAATAATAGGAGCAGCAATGTTATATTATGGAGTAGT
AACAGTTATGGTTTTGGTACTGGCGCTAGGGAGCCGGTTCTTTGATATGT
ACGCCAAATTCCTGAACAAAGATAGCTGGCTACCTGAAGAAAACAATAAG
GAACAAGACCTGTCTTTCCCATGATCCATTATCTGGAACCCACAATGCAT
CGCGAAAGGGTGTATTGATActtttatatgaaaaaattaCATCTTTTTAT
ACTCTCTTTTTGTATTATTTACTTTATtcatatattttcataaaaacgCA
TATCATAGTCATCAC Run BLAST on NCBI protein sequence of TCONS_00014748-protein >TCONS_00014748-protein ID=TCONS_00014748-protein|Name=TCONS_00014748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MHALAAGSIGNSELPRRYRTSRFNLNVSSPQGSVASEQKNTGKPKIVINI
SGMIFETYASTLNKYPDTLLGTPLKRSLITDRRTKQIYLERNRNSFDAIL
FYYQSSGCLIRPSNVSMIDFEEECAYFDLPQDAVKRMKCRDGFLHKRETK
LPGYKYYRDFQYTLWQFFEFPKEFKNRSAMVYFVFSFALIFASIAIFCVE
SEILLLNWKSARLKEYYYIQQSIELALNVYFAMELLARFFATPIKKRFFE
KILNNIEITSVILFLGAIWLPSHFVTKWAINLSRILRAFRISRLARMSAM
IKTSILVFKSSVNDILAVWFTILIICVLCGSTMYYVEMSEPGTNFTSIPM
SMWWAMQTVLCLGYGDIVPTSVPGKIIGAAMLYYGVVTVMVLVLALGSRF
FDMYAKFLNKDSWLPEENNKEQDLSFP Run BLAST on NCBI transcript from alignment at sc0000197:165456..167070 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014748 ID=TCONS_00014748|Name=TCONS_00014748|organism=Clytia hemisphaerica|type=transcript|length=1615bp|location=Sequence derived from alignment at sc0000197:165456..167070 (Clytia hemisphaerica)
GTGATGACTATGATATGcgtttttatgaaaatatatgaATAAAGTAAATA
ATACAAAAAGAGAGTATAAAAAGATGtaattttttcatataaaagTATCA
ATACACCCTTTCGCGATGCATTGTGGGTTCCAGATAATGGATCATGGGAA
AGACAGGTCTTGTTCCTTATTGTTTTCTTCAGGTAGCCAGCTATCTTTGT
TCAGGAATTTGGCGTACATATCAAAGAACCGGCTCCCTAGCGCCAGTACC
AAAACCATAACTGTTACTACTCCATAATATAACATTGCTGCTCCTATTAT
TTTCCCTGGTACTGAGGTAGGAACAATGTCCCCGTACCCCAGACACAAGA
CTGTCTGCATTGCCCACCACATGGACATTGGGATACTAGTAAAGTTGGTC
CCAGGCTCCGACATTTCAACATAGTACATAGTGCTTCCACATAAAACACA
AATTATTAGAATTGTAAACCAAACTGCTAGAATATCATTCACTGAACTTT
TAAATACTAGAATAGAAGTTTTTATCATTGCAGACATGCGTGCCAAACGT
GATATTCTAAACGCACGGAGAATCCGTGATAAATTGATAGCCCATTTAGT
TACGAAATGAGATGGTAACCATATCGCACCTAGGAATAATATAACAGAAG
TTATTTCAATGTTGTTGAGTATTTTCTCGAAGAATCGTTTCTTAATAGGT
GTAGCAAAAAACCTTGCCAGAAGTTCCATAGCAAAGTAAACATTCAATGC
GAGTTCTATTGATTGCTGTATGTAATAATATTCCTTCAAACGAGCACTCT
TCCAATTTAAtaacaaaatttcactttccacgCAAAATATTGCGATCGAA
GCAAAAATTAATGcgaaagaaaatacaaaatacaCCATAGCTGAccgatt
tttaaattcttttgggAATTCAAAAAACTGCCATAATGTATATTGGAAAT
CACGGTAATATTTATAACCGGGTAGTTTCGTTTCTCGTTTGTGTAAAAAT
CCATCTCTGCATTTCATTCTTTTAACTGCATCTTGCGGTAGATCAAAATA
AGCACACTCTTCTTCAAAATCTATCATGGAGACGTTACTAGGTCGTATTA
AACATCCACTGCTTTGGTAATAAAAGAGTATCGCGTCAAATGAATTTCGA
TTCCGCTCCAGGTAGATCTGTTTAGTACGCCTGTCCGTAATGAGTGACCG
CTTTAAGGGTGTTCCGAGTAAGGTATCCGGATATTTATTTAAAGTCGATG
CGTAAGTTTCGAAAATCATTCCACTAATATTGATGACAATTTTGGGTTTT
CCGGTGTTTTTCTGTTCGCTTGCTACGGAGCCTTGCGGTGAACTTACATT
CAGGTTGAATCTGCTGGTCCTGTACCGTCTTGGCAACTCGCTGTTACCAA
TGGAACCGGCTGCTAATGCGTGCATGTTGGTGGCGTGTTAAACAATTAAT
GTCTGTGGTGTACATTTATTTGTTATTTTCATTCCCTAAAAAAGTTCATA
ATTATAGttacataccttatcgggggaaaaaatgtcgggggaaagtgacg
aaaattttgagtgggtgacgaaattttcacccgacgaaaaaaaaacccga
ctaaataaaactccg Coding sequence (CDS) from alignment at sc0000197:165456..167070 >TCONS_00014748 ID=TCONS_00014748|Name=TCONS_00014748|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000197:165456..167070 (Clytia hemisphaerica)
TCATGGGAAAGACAGGTCTTGTTCCTTATTGTTTTCTTCAGGTAGCCAGC
TATCTTTGTTCAGGAATTTGGCGTACATATCAAAGAACCGGCTCCCTAGC
GCCAGTACCAAAACCATAACTGTTACTACTCCATAATATAACATTGCTGC
TCCTATTATTTTCCCTGGTACTGAGGTAGGAACAATGTCCCCGTACCCCA
GACACAAGACTGTCTGCATTGCCCACCACATGGACATTGGGATACTAGTA
AAGTTGGTCCCAGGCTCCGACATTTCAACATAGTACATAGTGCTTCCACA
TAAAACACAAATTATTAGAATTGTAAACCAAACTGCTAGAATATCATTCA
CTGAACTTTTAAATACTAGAATAGAAGTTTTTATCATTGCAGACATGCGT
GCCAAACGTGATATTCTAAACGCACGGAGAATCCGTGATAAATTGATAGC
CCATTTAGTTACGAAATGAGATGGTAACCATATCGCACCTAGGAATAATA
TAACAGAAGTTATTTCAATGTTGTTGAGTATTTTCTCGAAGAATCGTTTC
TTAATAGGTGTAGCAAAAAACCTTGCCAGAAGTTCCATAGCAAAGTAAAC
ATTCAATGCGAGTTCTATTGATTGCTGTATGTAATAATATTCCTTCAAAC
GAGCACTCTTCCAATTTAAtaacaaaatttcactttccacgCAAAATATT
GCGATCGAAGCAAAAATTAATGcgaaagaaaatacaaaatacaCCATAGC
TGAccgatttttaaattcttttgggAATTCAAAAAACTGCCATAATGTAT
ATTGGAAATCACGGTAATATTTATAACCGGGTAGTTTCGTTTCTCGTTTG
TGTAAAAATCCATCTCTGCATTTCATTCTTTTAACTGCATCTTGCGGTAG
ATCAAAATAAGCACACTCTTCTTCAAAATCTATCATGGAGACGTTACTAG
GTCGTATTAAACATCCACTGCTTTGGTAATAAAAGAGTATCGCGTCAAAT
GAATTTCGATTCCGCTCCAGGTAGATCTGTTTAGTACGCCTGTCCGTAAT
GAGTGACCGCTTTAAGGGTGTTCCGAGTAAGGTATCCGGATATTTATTTA
AAGTCGATGCGTAAGTTTCGAAAATCATTCCACTAATATTGATGACAATT
TTGGGTTTTCCGGTGTTTTTCTGTTCGCTTGCTACGGAGCCTTGCGGTGA
ACTTACATTCAGGTTGAATCTGCTGGTCCTGTACCGTCTTGGCAACTCGC
TGTTACCAATGGAACCGGCTGCTAATGCGTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014748-exon-sc0000197-1491911889:165456..167070 | TCONS_00014748-exon-sc0000197-1491911889:165456..167070 | Clytia hemisphaerica | exon |
| TCONS_00014748-exon-sc0000197-1510915933:165456..167070 | TCONS_00014748-exon-sc0000197-1510915933:165456..167070 | Clytia hemisphaerica | exon |
| TCONS_00014748-exon-sc0000197-1575043694:165456..167070 | TCONS_00014748-exon-sc0000197-1575043694:165456..167070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:165456..167070 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0051260 | protein homooligomerization |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00014748 vs. Swiss-Prot (Human)
Match: KCNA3 (Potassium voltage-gated channel subfamily A member 3 OS=Homo sapiens GN=KCNA3 PE=1 SV=3) HSP 1 Score: 214.927 bits (546), Expect = 1.672e-61 Identity = 136/403 (33.75%), Postives = 214/403 (53.10%), Query Frame = 2
Query: 278 PQGSVASEQKNTGKPKIVINISGMIFETYASTLNKYPDTLLGTPLKRSLITDRRTKQIYLERNRNSFDAILFYYQSSGCLIRPSNVSMIDFEEECAYFDLPQDAVKRMKCRDGFLHKRETKLPGYKYYRDFQYTLWQFFEFPKEFKNRSAMVYFVFSFALIFASIAIFCVESEILLLNWKSARLKEYYYIQQSIELALN------------------------VYFAMELLARFFATPIKKRFFEKILNNIEITSVILF---LGAIWLPSHFVTKWAINLS-----RILRAFRISRLARMSAMIKTSILVFKSSVNDILAVWFTILIICVLCGSTMYYVEMSEPGTNFTSIPMSMWWAMQTVLCLGYGDIVPTSVPGKIIGAAMLYYGVVTVMVLVLALGSRF 1390
P A EQ G+ ++VINISG+ FET TL ++P+TLLG P +R D + + +RNR SFDAIL+YYQS G + RP NV + F EE ++ L ++A+++ + +GFL + E LP RDFQ +W FE+P+ + A + S +I SI IFC+E+ L ++ + Q S E A N ++F+ ELL RFFA P K F I+N I+I ++I + LG + A++L+ R++R FRI +L+R S ++ K+S+ ++ + F + I +L S +Y+ E +P + F+SIP + WWA+ T+ +GYGD+ P ++ GKI+G+ GV+T+ + V + S F
Sbjct: 91 PSLPAAGEQDCCGE-RVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGFLREEERPLP----RRDFQRQVWLLFEYPE--SSGPARGIAIVSVLVILISIVIFCLET---LPEFRDEKDYPASTSQDSFEAAGNSTSGSRAGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKATFSRNIMNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 483
The following BLAST results are available for this feature:
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