TCONS_00014722 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014722
Unique Name	TCONS_00014722
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	935

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000197:146185..152519-

transcript sequence

>TCONS_00014722 ID=TCONS_00014722|Name=TCONS_00014722|organism=Clytia hemisphaerica|type=transcript|length=935bp
CTGGACAAATGGCtaattcagcaaaaaaaaaacgaaaaaatgttGAGATG
TAcacaaaagtaatgaaattggAGAcgattgagaaatctaaaaacaacCA
CACTAGTCTAAGCATCTTGCATTGAATGCTTACATAAGCAAGTCCTGCTG
TCNAATGAAATTGGAGAcgattgagaaatctaaaaacaacCACACTAGTC
TAAGCATCTTGCATTGAATGCTTACATAAGCAAGTTTTTTAAATACTGCA
GGGAAGTTAGGGAAAACATACTTTCAAACATACATATATAAACAGATATA
AAGTTTAGAGATAAGTTTAAAAGTACTATTTGAATAAATTCACTGGAAGT
CATGACGAGTAACGAAGGACAATCACCACCGAGTGAACTACCACTGAAAG
TTTATTACATCAAGGATCGACAAACCAAAGAAATTCGGAAGTTCACCGTC
CAATCAACATCTAAAGAAGATTTTGGATACCTCCGAGGGAAGATTTGCCA
AATGTTTCCAGAATTAAGGGAGAAGGAGATTGAGATATTTTGGAAAGATG
AGGAGGAGGATTTGGTCATCATTTCATCAAACGAAGAACTTTCACAAGTA
TGGAAAAACGCCGACGCGTCCAAAAGCGTCAAACTTTACGTCAAAACTAA
AGAAGATTCATCAGAAATTTCTCAACCGGGACCTCGCGAAAGACGTAGGC
ATTGTCGTGGCCTCTTTGGCCCGAGAGGGCATCACTTCGATCCAAGAAAA
GGAATGTTTGGCGGTAGAGGAGGGCTCAAGGGACGCAGAGGTGGCGCTTG
TGGGCCGAGACGAGGTTTTGGATTTGGAAAACGTGGAGGGATGTCTGCAC
CTAGAGGCAGTTTCTTTGGTGGTAGAAGAGGACGCGGGGGACTTCCATTT
CCACCACACTTTGAAGGAAGACACCATCAGCATGA

Run BLAST on NCBI

transcript from alignment at sc0000197:146185..152519-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014722 ID=TCONS_00014722|Name=TCONS_00014722|organism=Clytia hemisphaerica|type=transcript|length=6335bp|location=Sequence derived from alignment at sc0000197:146185..152519- (Clytia hemisphaerica)
CTGGACAAATGGCTAATTCAGCAAAAAAAAAACGAAAAAATGTTGAGATG
TACACAAAAGTAATGAAATTGGAGACGATTGAGAAATCTAAAAACAACCA
CACTAGTCTAAGCATCTTGCATTGAATGCTTACATAAGCAAGTCCTGCTG
TCNAATGAAATTGGAGACGATTGAGAAATCTAAAAACAACCACACTAGTC
TAAGCATCTTGCATTGAATGCTTACATAAGCAAGTTTTTTAAATACTGCA
GGGAAGTTAGGGAAAACATACTTTCAAACATACATATATAAACAGATATA
AAGTTTAGAGATAAGTTTAAAAGTACTATTTGAATAAATTCACTGGAAGT
CATGACGAGTAACGAAGGACAATCACCACCGAGTGAACTACCACTGAAAG
TTTATTACATCAAGGATCGACAAACCAAAGAAATTCGGAAGTTCACCGTC
CAATCAACATCTAAAGAAGATTTTGGATACCTCCGAGGGAAGATTTGCCA
AATGTTTCCAGAATTAAGGGAGAAGGAGATTGAGATATTTTGGAAAGGTA
AGAGTGCCTCGATTATTTGCAGATTACTGCTCTTTTTTGTGAGAATATCA
AAAATATTCAAAGCCTTTTGATGTTCTTAACATTTTGCCTAAATGTTCTA
AAAATGCTCTCAATTTCACCATTTATTATGAGCATTTTTGTGCAATTTCC
CAAGAAATTGGGAGCTTTAGAAACCGTTAAAGGTTTTATTTTTACGTTAG
TGTTGTTGTCTCCCTATTGTTATATTGTGCTGAATAAACAAAAAAATGTT
TTTCTTTTCCTCCTGCTGACCAATCTTGCTCCACATCCGTGTCAATTCAA
TGTGAAAAAGCTTGTAAATTAAAATTGATGAGTCCGCAAACGATTTCTTA
TTTAAAAACAAAACCTTTAAGAAAGCGTTTTGCCAGTATGTCCATTTATC
AAATCATAGTAAATCATTCTATTCATTATGAAATAAAAGTCTTTAAACGG
AAAAATACTGTTTTGAGCCGTATATGAATATTTTACAGCTTAAGTCGTCT
GAATTTGAACAGCGAAAGTTTGTAGACTGGTTCTCTTGACCATGAATGGT
ATCAAAAATGATCCAATATACAAAGTCAGACAAACGTGGTAAAAGATGTT
TTAGAGAAAAGTATCTTTTATTAAAATGTTACATACATTTTAGAGAGCCT
CGATTTGAGCAAGTAAGACTAATGTAATGCAATATAATACTATATAGAAC
CAAAACTACACATAAAACAGATTAATACTCATTCATGCAAAATTCCAAGA
TATCTTTGTAAACAAACTGGAAGTCGCTCGTTTAAATATTTCTCACCAAA
GGACTTCAAACAAGCCAGTCTTGCAAAATGTTTCAAAGTGATATCATGAG
ATGGAAGTTTGGTAATTTTAAGGTGTTTCTCTCGTTCATCACCATTTGAT
GTCCAAACTGCAATTTCACTCAAATCCCAATTCAGATCAAAATGTAAAAT
TTGTTCATTTTCAGAACCACTGTATAAAACCTTTTGCTCTCCTGTTATAA
GGTTATAAGACCAAACTCCATAACATCCTTCTGCCAAGAATTCTACATCT
TCAACAATGGCACACACTAATACTTGGTTAAAATAGCTCACTATGTGGAT
TGAATTTTCAATGCTTCTAACAGCTAAATTAGAAGCTGGCAAATCGATTG
TTTTCAACATTGTTATTCCAGAAGGTGTTACATTGGCTGTTTTAAAGTGA
TTTTTCCAGGAAGAAGGCGAATATATCAGGAACAAGAATCGCAAAATTGC
GACTAAATATTTCCTTAAAAATGAAGGTCATTATTGACATAATATAAAAA
AGCACACATAATAAAGTATACATATATATTTGTCCAGAAAGAACTGGCAT
GTCGTTTGCTTTGATTTGGTGTTTAAAAATATGTACTTATCAGTCCTAAA
AAAAATACAAATTTGAATATAATGAGGGCAATAAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGTCAGG
GCGTACGGAAGGCGTTTTGACACGGGAAATTATGGAGAAAGCCCGTTTTA
ATAAATATTTCCCTTTTGGAAAACGGGAAATATTTAAAAATGACTTCCTG
ATATGAAGAACATTTGAGGAATCACAATCTAGTGTTGCATTTTCCATAAT
ACAACTCCCAGAAAAGTCGAGGATTGATAATTGCAGTCTTGCGGTTACTT
TATTATGACCTGACGGTAGTCTTCTTCTGTGTCTCCTATTCTGGAACAGA
TAAACGATGGAAGCATCGATATCCAGAAAAAGGGTAGTAAACCGTAAATT
ATGGTTTAAAAAAATCCGTTTTAAGTGAAATATTTCATTTTCATTAAAGC
ATACAAGATCTAAGATGGAGTAAGAGTTTTCAAGGTTATTCGAAGGTGAT
ATAATGGCCAATGTATTTCCCAACAAACTGCTAGAGCGGCGAGGGAGTCT
TCTATGTCCAAGCTTAGGTTGGTAAAAAAGTCTACATTTTAGAAATGATT
TTTCATCACAGTGAATGATGTTTCCGTCAGGTTGATCAATATCTACAAAT
CCAGTGTAAACAAAAATTTCTTCAAGTAGAGATGTTTTGTCCATCACAAA
TCCAATGATAAACCATCGTCCTGATGAATTGTCGTATAACACACAATAAC
ACTCGAGATTGGTATTTCTCTTTAGAACAAGCTTGTTATAATTTTGATTG
AGCCTCTTGCCATTTTCGCCGACTGAGCAAACCAATATGATAGCAACTAC
TTTGTGGAGCGGTAAATTAAGATCTACGTAGTGCCTACCTAGAGCCGCCC
GTATACCGTAGAGTCTCCTTCGTGACAAAAACCCACCATTGTAGATACCA
GACAAATCAATGCTTTTCTGATCGTCCTCTTGAGAACTTTCAACTGACGT
TGTCAAAGCCGGTAGAAAGTTCACTCGATAGAGATACTCTTTTTCCATAC
TATAACTAGAAGATACGAAACTGCATCAACAAACACATTTAAGAGCAATG
ATATTCTAAAACGCAGATTTATAATTAGACATTCCATAGGATAAAGAAAA
CAAGAGTTTATTTAGTCATTGCTACAAAATGTCATGTCAAATTTATTAAA
AAGACGGGGGTTCATGGATTAAAATACCAAATAAAAACAAACAGTCGATT
CGAAAAAAAACAAGATCGCATAATAAAGACGATTGTTGTTTGTGATGAAG
AGTATTTGATGATTTTATCAATCATTTGAAGAAAGAAGGTACTCAAGAGT
TCATAGATTGATGCTTTGGATGAATCCATTCCTTGCATTTCTTCGTAAAA
AAGTGAGAGAATAAGCTTTTACAGGAAATGATGTTTAGTTGTATTTTCCT
AGAATTTCAATGATAATTTCGCCTTTCCAATAATTAATCAGTCATGAGAA
CTGGTTTTGTATCTTTAAATCGCTGACTGAGATGCATTAAGGGAAGTTAA
AGACAAGAGATCATTCAACGCTTTGTTATTCATGATATAATGCACCATTG
CAAGGTCCTCCATGGACCAAACAGCTGATTGGTTGAAAGTGACGTATTGA
CTGATTATACGTCACTTACAAACAATCAGCTAATGGGTCTGTGATGTAAT
GTCAGAAGACATTGCAATGGTGCATATTATCATGAAGAAGAATGATTAGA
TCCTAACCTGAGAATACTGTAAGAATATTTCAGGATGATTATGTACCTTT
AAATCGCTGACTGAGAGCTGTCAATGGTTTAAGACAGGAATGAGATCATT
ATATTTCCCAAGATTATACATATATCTTATATCTTCTAAATAAATTTGAT
CAGTGTTGGCAATTCAAACAAAGCTCAAATCTTGCTGATATAAAGCAAAG
AATGTAATTGAATCTGAATAGATGGATAAAACATACCTTTATTCAGCATT
CTTTAATTGAATTCAAACAACAACAACTTACATATTTTTTACAATAGATG
AGGAGGAGGATTTGGTCATCATTTCATCAAACGAAGAACTTTCACAAGTA
TGGAAAAACGCCGACGCGTCCAAAAGCGTCAAACTTTACGTCAAAACTAA
AGAAGATTCATCAGAAATTTCTCAACCGGGACCTCGCGAAAGACGTAGGC
ATTGTCGTGGCCTCTTTGGCCCGAGAGGGCATCACTTCGATCCAAGAAAA
GGAATGTTTGGCGGTAGAGGAGGGCTCAAGGGACGCAGAGGTGGCGCTTG
TGGGCCGAGACGAGGTTTTGGATTTGGAAAACGTGGAGGGATGTCTGCAC
CTAGAGGCAGTTTCTTTGGTGGTAGAAGAGGACGCGGGGGACTTCCATTT
CCACCACACTTTGAAGGAAGACACCATCAGCATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008235	XLOC_008235	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00014722-exon-sc0000197-1575043694:151973..152519	TCONS_00014722-exon-sc0000197-1575043694:151973..152519	Clytia hemisphaerica	exon
TCONS_00014722-exon-sc0000197-1575043694:146185..146572	TCONS_00014722-exon-sc0000197-1575043694:146185..146572	Clytia hemisphaerica	exon
TCONS_00014722-exon-sc0000197-1510915933:151973..152519	TCONS_00014722-exon-sc0000197-1510915933:151973..152519	Clytia hemisphaerica	exon
TCONS_00014722-exon-sc0000197-1510915933:146185..146572	TCONS_00014722-exon-sc0000197-1510915933:146185..146572	Clytia hemisphaerica	exon
TCONS_00014722-exon-sc0000197-1491911889:151973..152519	TCONS_00014722-exon-sc0000197-1491911889:151973..152519	Clytia hemisphaerica	exon
TCONS_00014722-exon-sc0000197-1491911889:146185..146572	TCONS_00014722-exon-sc0000197-1491911889:146185..146572	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000197	supercontig	sc0000197:146185..152519 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	14.8379	9.35021	5.28222	7.47316	15.5999	42.1407	86.6072	9.29544	15.5306	7.61542	0.900971	4.26068	1.05828	1.10018	0.373291	9.61462	0	2.18467	0	0	122.024	123.492	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00014722 vs. Swiss-Prot (Human)

BLAST of TCONS_00014722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00014722 (transcript) - C. hemisphaerica