TCONS_00014714 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014714
Unique Name	TCONS_00014714
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1960

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000197:65892..69233-

transcript sequence

>TCONS_00014714 ID=TCONS_00014714|Name=TCONS_00014714|organism=Clytia hemisphaerica|type=transcript|length=1960bp
TTGNCAAACATCTGGAAACCCTTCTCCTCCCTTCGACAGCATGCAGCAAC
TAAATCGAATGCAAGAAAGTTTAGACGACGCCATCTGGGTATTGAAAAGT
CACGCAGAAAGCACTTCACAACGCAATCAAAACATGCCACCCAACGCCCA
ATACCCGTCCACCCCACAATTTCCACCCGGTTTAACAGATCAGTTACAAA
ACTTACAAAACTCTGTCCTGGATACACCAGGAGGTTTGGAAGCTTCCACG
GCTGCTCTCTTAAACTCAATGAATACAATTCGAGAAGGCGGTATGCTAGG
TTCcgagaaaaaatcaaaagtcaaaGTAGAAGGGAAAGGCAAGAAACGTT
CAAAAGATTCTATTGATGACGATCTCAATGACGAGCCTGGAAACGAAGAA
ACTGGGGGCACAAAAGTCGTCCGCGAGTCCGAACGACGACACGCGAACAA
CGCTCGTGAAAGGATACGAGTGCGAGATATCAACGAAGCTTTCAAAGAAC
TCGGGCGAATGTGTTCGTTACACCTCAAAAACGAAAGTCCACAAACGAag
ttgacgATTTTACATCAAGCAGTCACAATTATCACTAGTCTCGAATCACA
AGTTCGAGAACGAAATTTGAATCCTAAAGCAGCGTGTTTGAAGCGGCGTG
GAGATGAGGAGAAGATGAATGATGACGTGTCAGAAAAAAGGATGAACATG
AATGGCTCTTTTGATGGCTCAAAGAGACCTGGAAACAAGAAACCTCAACA
AGTTCGAAGGACGGgTTTTCCAACCGATCAACTAGACGGCTCAGTTCAAC
CCATGGTACCGGATGCCGGCATTTTCTCTCATTAGCTTCTACACTTTCCG
AATAGGCTGTGACAAATGACTAGAAGATGTAGATCACTAGATCCAGTCTC
CTCCCGAGTCTTATGCAGCTCTTTGAGCCATTGGAGTTGACagacctttt
tttgaaaaaaagacatTCATAAAAAACCACCCATTCATTTTTCTATCCGG
CTGTGCTTTTGTATCCGAGCTTCTGTTATTATGGAGAGATTGTTTTTTGT
ATATATGTCCCCCTGATCCAGTATATGTGCCGCCGTCAAAAGTTCATTGG
TTAGAGATATCTGGTTGAAACATTCAAATCAATGacaatgaaaaacattt
aaaaggaaCTTTCTTTTATTCCAAAGCGGCAAAACTGTAATCAAAGATAC
ACctaattattattattgtacAAAGTAGAATATTTGACCCAAGTTTTTTG
AGAGAGATTTTTTTATTCGTATTGCGGACGATGTATGAcggaaagtttat
ttttttcggACAACATTTGGTTTTGATGTAGATTTTGACGATTTCGCaaa
atttcttgatttcataatattgaggatttttgcagtaaaaacaaaacaac
ccTTAGAAATATTTATTATTATCTTGATTAGAAGCAaagttattgtttta
tttttagactGATTATTTTGGTTGTATATGTTTTTTAAGGCaaattttat
tttgctttttatGTTTCCATGAGCGCTCAAGTAACCTTATTTTGGTTTAG
CAGATCttctgaaatttattttcaatttcaaagtttcaaaCTCATTACAG
ACCACCATTAGCCTCTGGTACAGTGTCTCTTGTGTGTATTGTTTAGGCTT
TAGTTTTAATTATTGTATATTATGACCCTATTATGGTTGTTATTTTAGCG
AAGTAGTACAGTGTTTATTTTTGAACCGTCCATATGTTTTGTAGGAGAGC
TGGTTAGGCGCCTAACCGTACTTTTGGTGTATGTTGATTCGTTGTAGACA
CAATGACGTCACATCAGCTCTCCACGACAATCTATCCCCAAAtatcaaga
gaagcaaattcaattttaataaaaagatacaaaaatgcaaaaatgaagct
TTTTGTTGTCATTATTTGTCGAATATATTCTGACTTttatcatggaggta
taaagaaata

Run BLAST on NCBI

transcript from alignment at sc0000197:65892..69233-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014714 ID=TCONS_00014714|Name=TCONS_00014714|organism=Clytia hemisphaerica|type=transcript|length=3342bp|location=Sequence derived from alignment at sc0000197:65892..69233- (Clytia hemisphaerica)
TTGNCAAACATCTGGAAACCCTTCTCCTCCCTTCGACAGCATGCAGCAAC
TAGTGAGTATTTTTTTAATACAATAATTTTATTTTGCATTTTTCATAATT
TTGACTTAATATGTATGCTATATTTACCACCTTTGAAATCTACTATTCTA
GTTTTCAAAACGGATTTTCTAAACAGAGCTGAACTATATTACCAGGAACA
CTTAACAAATGACCATCACATTTATTACAATTTGTTTTAAATATTTTTTG
TTCTTTCGTTTTATAGAATCGAATGCAAGAAAGTTTAGACGACGCCATCT
GGGTATTGAAAAGTCACGCAGAAAGCACTTCACAACGCAATCAAAACATG
CCACCCAACGCCCAATACCCGTCCACCCCACAATTTCCACCCGGTTTAAC
AGATCAGTTACAAAACTTACAAAACTCTGTCCTGGATACACCAGGAGGTT
TGGAAGCTTCCACGGCTGCTCTCTTAAACTCAATGAATACAATTCGAGAA
GGCGGTATGCTAGGTAGGCTTTCTCACCATACTCTATTCATATTAATGGT
CACATGACCATCCATTGTGAGCCTTTGTTTGACGAACAGGAAGTCCAGAA
TGTTCGAACTACAGAGAGATTCGAATCATAGAGACAAGTAGCTCGAATTA
ACGAGAGTCCACCGTAACTGCCTTTTTGAACAATGCCTTTCTATAAATTT
AATGTTAAATAGTAGTTTTAAGCATGCAAAACGAGGCGTGTTCTCATCGA
TCTCAAAAAGAATGCATTATTTTAATTTCTCAACAAAATGTCAAAATATG
TACAAATAAATCTAACCGCAATATCTTTGCTTCAAACTTCAGGTTCCGAG
AAAAAATCAAAAGTCAAAGTAGAAGGGAAAGGCAAGAAACGTTCAAAAGA
TTCTATTGATGACGATCTCAATGACGAGCCTGGAAACGAAGAAACTGGGG
GCACAAAAGTCGTCCGCGAGTCCGAACGACGACACGCGAACAACGCTCGT
GAAAGGATACGAGTGCGAGATATCAACGAAGCTTTCAAAGAACTCGGGCG
AATGTGTTCGTTACACCTCAAAAACGAAAGTCCACAAACGAAGGTATTTG
AAAATTTGTTTTCTGAATTTTAACTGAATTTTAAAAATTAGCTTATATGT
TTGTTCCCGTTAAGTTCCCAGACTTAATTTATGAATTCTTTTTTTTTTTT
CAGTTGACGATTTTACATCAAGCAGTCACAATTATCACTAGTCTCGAATC
ACAAGTTCGAGGTATGGCCAAGTTCGATTATTTTTTAATTTTTACGATAT
GGCATATCTTTGCATTTGCTAGCTTTAGTTTAGGTGTCATTGTCATTTGG
AAAGTCTTGTTAATCGTGGAAGCTCTTATGAGATTTATGAGAATCATTTT
ATCAATTGAACTTGTTCAATAACAATGTTTGGACATAGTGATTTAAATTG
ACAGAACTTTGGAACAATACAAAACATTATGTGCCAACACGTATGTATGT
GCGCATGAGCTGTTGCACTAGTAATGCGAAAGTCGTGAGTTCGAATCTCA
CTTCAGTCCTCAGTTTAGTAGTTCTCTATCAAACTGAGTTCAATGTGCAC
ATACATACGTGTTGGCACTTAATGGTAAGTCGTTGATAATGATATCGTTG
AATAACAAAATGTTATGATTCATTCTTCATTTCTATATTTTACAGAACGA
AATTTGAATCCTAAAGCAGCGTGTTTGAAGCGGCGTGGAGATGAGGAGAA
GATGAATGATGACGTGTCAGAAAAAAGGATGAACATGAATGGCTCTTTTG
ATGGCTCAAAGAGACCTGGAAACAAGAAACCTCAACAAGTTCGAAGGACG
GGTACGTTTAAGTGTTGTGTTCTTGGCTAGCTACATTTGAGATTGGAAGG
TTTTCACAGAGTTTTTCTTCTCTCTTTGCTTATATGTTGTTCAATGAAGG
AGCGAAGCCTCATTTTTTAAGGATTGATCAAGAAGATCATTATAAATTTT
CTACCACTACTTGATAATCTTAGCCAAATTTTCTACAATAGCGCTCCAGC
CTCGCACCAGTTTTAAACGCTGAATTTTGCTGGTTCTCAAGGACTGTTAG
TTTAGCGAATAACAATCCAAGACTGATCATATTTTTGCATTTTTAGGTTT
TCCAACCGATCAACTAGACGGCTCAGTTCAACCCATGGTACCGGATGCCG
GCATTTTCTCTCATTAGCTTCTACACTTTCCGAATAGGCTGTGACAAATG
ACTAGAAGATGTAGATCACTAGATCCAGTCTCCTCCCGAGTCTTATGCAG
CTCTTTGAGCCATTGGAGTTGACAGACCTTTTTTTGAAAAAAAGACATTC
ATAAAAAACCACCCATTCATTTTTCTATCCGGCTGTGCTTTTGTATCCGA
GCTTCTGTTATTATGGAGAGATTGTTTTTTGTATATATGTCCCCCTGATC
CAGTATATGTGCCGCCGTCAAAAGTTCATTGGTTAGAGATATCTGGTTGA
AACATTCAAATCAATGACAATGAAAAACATTTAAAAGGAACTTTCTTTTA
TTCCAAAGCGGCAAAACTGTAATCAAAGATACACCTAATTATTATTATTG
TACAAAGTAGAATATTTGACCCAAGTTTTTTGAGAGAGATTTTTTTATTC
GTATTGCGGACGATGTATGACGGAAAGTTTATTTTTTTCGGACAACATTT
GGTTTTGATGTAGATTTTGACGATTTCGCAAAATTTCTTGATTTCATAAT
ATTGAGGATTTTTGCAGTAAAAACAAAACAACCCTTAGAAATATTTATTA
TTATCTTGATTAGAAGCAAAGTTATTGTTTTATTTTTAGACTGATTATTT
TGGTTGTATATGTTTTTTAAGGCAAATTTTATTTTGCTTTTTATGTTTCC
ATGAGCGCTCAAGTAACCTTATTTTGGTTTAGCAGATCTTCTGAAATTTA
TTTTCAATTTCAAAGTTTCAAACTCATTACAGACCACCATTAGCCTCTGG
TACAGTGTCTCTTGTGTGTATTGTTTAGGCTTTAGTTTTAATTATTGTAT
ATTATGACCCTATTATGGTTGTTATTTTAGCGAAGTAGTACAGTGTTTAT
TTTTGAACCGTCCATATGTTTTGTAGGAGAGCTGGTTAGGCGCCTAACCG
TACTTTTGGTGTATGTTGATTCGTTGTAGACACAATGACGTCACATCAGC
TCTCCACGACAATCTATCCCCAAATATCAAGAGAAGCAAATTCAATTTTA
ATAAAAAGATACAAAAATGCAAAAATGAAGCTTTTTGTTGTCATTATTTG
TCGAATATATTCTGACTTTTATCATGGAGGTATAAAGAAATA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008234	XLOC_008234	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000197	supercontig	sc0000197:65892..69233 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69852	2.20615	13.9437	17.589	0.428354	0.325633	0	0.174449	4.50778	4.24562	4.3314	3.71936	4.57963	4.3706	1.92552	2.2627	9.56876	9.26219	7.25309	6.99052	11.7164	14.6026	8.86638	8.80199	0.143265	0.200175	50.8291	41.2572	5.98154	6.00356

Blast

[Close]

BLAST of TCONS_00014714 vs. Swiss-Prot (Human)
Match: HTF4 (Transcription factor 12 OS=Homo sapiens GN=TCF12 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.667e-37
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 2

Query:  365 DDDLNDEPGNEETGGTKVVRESERRHANNARERIRVRDINEAFKELGRMCSLHLKNESPQTKLTILHQAVTIITSLESQVRERNLNPKAACLKRRGDEEKMNDDVSEKRMNMNGSFDG 718
            D+DLN E         K+ RE ERR ANNARER+RVRDINEAFKELGRMC LHLK+E PQTKL ILHQAV +I SLE QVRERNLNPKAACLKRR +EEK++   +E    + G+  G
Sbjct:  563 DEDLNPE--------QKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRR-EEEKVSAVSAEPPTTLPGTHPG 671

The following BLAST results are available for this feature:

BLAST of TCONS_00014714 vs. Swiss-Prot (Human)

BLAST of TCONS_00014714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HTF4	1.667e-37	65.25	Transcription factor 12 OS=Homo sapiens GN=TCF12 P...	[more]

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TCONS_00014714 (transcript) - C. hemisphaerica