TCONS_00014705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014705
Unique NameTCONS_00014705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014705 ID=TCONS_00014705|Name=TCONS_00014705|organism=Clytia hemisphaerica|type=transcript|length=663bp
GTCAGCTTCTGCTCCAAAATCCCAGATCTTTCTTTACACACAAGACACCA
CGAGGAAAGGAAGGCTCACCGCTGCTCCTCTCTAAAACTCATCTTTTATC
GAGGATTAAGTCGGCCTAGAACAATCATGTCTGCATTCAAAGAAAAGCAA
GTTCAAGAGGAGGAAGCTGAAATTCATCGCATCCGAATCACTTTGACAAG
TCGCAATGTTAAGAGCTTGGAAAAAGTCTGCTCTGAATTGATCCGTGGAG
CCAAAGACAAGAAATTGATGGTTAAAGGTCCAGTCCGTTTGCCCACAAAA
ACCCTTCGTATCACTACCCGAAAAACACCTTGTGGTGAAGGTTCCAAGAC
CTGGAGCAGATATGAAATGAGAATTCACAAACGACTCATTGATTTGCACA
GCCCTGCCGAAGTTGTCAAACAAATCACATCAGTCAGTATTGAACCTGGA
GTCGAGGTCGAAGTCACCATCGCTGATGTTTGATTTATAAtagtacaaga
aagaaaaaattaaaacaggcaaaaaaattgtgttgtgtattttatACCTT
ACATCTATGGATTAATTACGATCAATTTAGTCAAGATCTAGTCCTTCAta
gcaaaaaattttaaatcggGATTACTGATGAAACTCGAACAAGAATAGAA
GGTTGAGAAATAG
Run BLAST on NCBI

protein sequence of TCONS_00014705-protein

>TCONS_00014705-protein ID=TCONS_00014705-protein|Name=TCONS_00014705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
VSFCSKIPDLSLHTRHHEERKAHRCSSLKLIFYRGLSRPRTIMSAFKEKQ
VQEEEAEIHRIRITLTSRNVKSLEKVCSELIRGAKDKKLMVKGPVRLPTK
TLRITTRKTPCGEGSKTWSRYEMRIHKRLIDLHSPAEVVKQITSVSIEPG
VEVEVTIADV
Run BLAST on NCBI

transcript from alignment at sc0000197:393493..394514+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014705 ID=TCONS_00014705|Name=TCONS_00014705|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at sc0000197:393493..394514+ (Clytia hemisphaerica)
GTCAGCTTCTGCTCCAAAATCCCAGATGTAAGTTTGTAGGATCTAGGGTT
TTGTTGCATGAGCACCAGCCAGACTGCATGTGCGcgccaaaaaataaaag
ttgCCTAGCAGTCATAGCAAGGCTACCATTTTAGAAATAGAATTTTTAGA
ATGTACTTTTGACGTATGGTATTTAGCACTTTTGAATCAAATGAAATATA
TTTCGTTTGAAGCTTTCTTTACACACAAGACACCACGAGGAAAGGAAGGC
TCACCGCTGCTCCTCTCTAAAACTCATCTTTTATCGAGGATTAAGTCGGC
CTAGAACAATCATGGTAAGTTTCCACGATCCAGATTTCCTTCTGATCAAA
CTTTCTCCTTGGTGATTAGTTTAATGTTCTTAAAACTTCCTAAAAGTTGT
GATTTCGGTGACAACAAATAATTCAGGTATTTTGTATTTGTCCTGTACCT
GTAGTAGTTATACCAGACCTCATTTTCTCTTTTTGCAGTCTGCATTCAAA
GAAAAGCAAGTTCAAGAGGAGGAAGCTGAAATTCATCGCATCCGAATCAC
TTTGACAAGTCGCAATGTTAAGAGCTTGGAAAAAGTCTGCTCTGAATTGA
TCCGTGGAGCCAAAGACAAGAAATTGATGGTTAAAGGTCCAGTCCGTTTG
CCCACAAAAACCCTTCGTATCACTACCCGAAAAACACCTTGTGGTGAAGG
TTCCAAGACCTGGAGCAGATATGAAATGAGAATTCACAAACGACTCATTG
ATTTGCACAGCCCTGCCGAAGTTGTCAAACAAATCACATCAGTCAGTATT
GAACCTGGAGTCGAGGTCGAAGTCACCATCGCTGATGTTTGATTTATAAt
agtacaagaaagaaaaaattaaaacaggcaaaaaaattgtgttgtgtatt
ttatACCTTACATCTATGGATTAATTACGATCAATTTAGTCAAGATCTAG
TCCTTCAtagcaaaaaattttaaatcggGATTACTGATGAAACTCGAACA
AGAATAGAAGGTTGAGAAATAG

Coding sequence (CDS) from alignment at sc0000197:393493..394514+

>TCONS_00014705 ID=TCONS_00014705|Name=TCONS_00014705|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at sc0000197:393493..394514+ (Clytia hemisphaerica)
GTCAGCTTCTGCTCCAAAATCCCAGATCTTTCTTTACACACAAGACACCA
CGAGGAAAGGAAGGCTCACCGCTGCTCCTCTCTAAAACTCATCTTTTATC
GAGGATTAAGTCGGCCTAGAACAATCATGTCTGCATTCAAAGAAAAGCAA
GTTCAAGAGGAGGAAGCTGAAATTCATCGCATCCGAATCACTTTGACAAG
TCGCAATGTTAAGAGCTTGGAAAAAGTCTGCTCTGAATTGATCCGTGGAG
CCAAAGACAAGAAATTGATGGTTAAAGGTCCAGTCCGTTTGCCCACAAAA
ACCCTTCGTATCACTACCCGAAAAACACCTTGTGGTGAAGGTTCCAAGAC
CTGGAGCAGATATGAAATGAGAATTCACAAACGACTCATTGATTTGCACA
GCCCTGCCGAAGTTGTCAAACAAATCACATCAGTCAGTATTGAACCTGGA
GTCGAGGTCGAAGTCACCATCGCTGATGTTTGAGTCAGCTTCTGCTCCAA
AATCCCAGATCTTTCTTTACACACAAGACACCACGAGGAAAGGAAGGCTC
ACCGCTGCTCCTCTCTAAAACTCATCTTTTATCGAGGATTAAGTCGGCCT
AGAACAATCATGTCTGCATTCAAAGAAAAGCAAGTTCAAGAGGAGGAAGC
TGAAATTCATCGCATCCGAATCACTTTGACAAGTCGCAATGTTAAGAGCT
TGGAAAAAGTCTGCTCTGAATTGATCCGTGGAGCCAAAGACAAGAAATTG
ATGGTTAAAGGTCCAGTCCGTTTGCCCACAAAAACCCTTCGTATCACTAC
CCGAAAAACACCTTGTGGTGAAGGTTCCAAGACCTGGAGCAGATATGAAA
TGAGAATTCACAAACGACTCATTGATTTGCACAGCCCTGCCGAAGTTGTC
AAACAAATCACATCAGTCAGTATTGAACCTGGAGTCGAGGTCGAAGTCAC
CATCGCTGATGTTTGAGTCAGCTTCTGCTCCAAAATCCCAGATCTTTCTT
TACACACAAGACACCACGAGGAAAGGAAGGCTCACCGCTGCTCCTCTCTA
AAACTCATCTTTTATCGAGGATTAAGTCGGCCTAGAACAATCATGTCTGC
ATTCAAAGAAAAGCAAGTTCAAGAGGAGGAAGCTGAAATTCATCGCATCC
GAATCACTTTGACAAGTCGCAATGTTAAGAGCTTGGAAAAAGTCTGCTCT
GAATTGATCCGTGGAGCCAAAGACAAGAAATTGATGGTTAAAGGTCCAGT
CCGTTTGCCCACAAAAACCCTTCGTATCACTACCCGAAAAACACCTTGTG
GTGAAGGTTCCAAGACCTGGAGCAGATATGAAATGAGAATTCACAAACGA
CTCATTGATTTGCACAGCCCTGCCGAAGTTGTCAAACAAATCACATCAGT
CAGTATTGAACCTGGAGTCGAGGTCGAAGTCACCATCGCTGATGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008231XLOC_008231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014705-proteinTCONS_00014705-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014705-exon-sc0000197-1491911889:393493..393519TCONS_00014705-exon-sc0000197-1491911889:393493..393519Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1510915933:393493..393519TCONS_00014705-exon-sc0000197-1510915933:393493..393519Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1575043694:393493..393519TCONS_00014705-exon-sc0000197-1575043694:393493..393519Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1491911889:393705..393806TCONS_00014705-exon-sc0000197-1491911889:393705..393806Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1510915933:393705..393806TCONS_00014705-exon-sc0000197-1510915933:393705..393806Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1575043694:393705..393806TCONS_00014705-exon-sc0000197-1575043694:393705..393806Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1491911889:393981..394514TCONS_00014705-exon-sc0000197-1491911889:393981..394514Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1510915933:393981..394514TCONS_00014705-exon-sc0000197-1510915933:393981..394514Clytia hemisphaericaexon
TCONS_00014705-exon-sc0000197-1575043694:393981..394514TCONS_00014705-exon-sc0000197-1575043694:393981..394514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:393493..394514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3223.32	3310.81	3988.13	4439.41	2939.86	2364.42	2932.85	3076.68	4840.52	4114.01	4824.85	5994.32	7718.26	8464.92	8116.3	7464.84	7862.19	7617.34	4313.23	4663.52	7346.88	7270.58	5363.23	5293.52	4854.99	5102.95	7894.21	8117.53	5555.53	5749.81
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR027486Ribosomal_S10_dom
IPR005729Ribosomal_S10_euk/arc
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00014705 vs. Swiss-Prot (Human)
Match: RS20 (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.799e-62
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:  133 AFKE--KQVQEEEAEIHRIRITLTSRNVKSLEKVCSELIRGAKDKKLMVKGPVRLPTKTLRITTRKTPCGEGSKTWSRYEMRIHKRLIDLHSPAEVVKQITSVSIEPGVEVEVTIAD 477
            AFK+  K   E E  IHRIRITLTSRNVKSLEKVC++LIRGAK+K L VKGPVR+PTKTLRITTRKTPCGEGSKTW R++MRIHKRLIDLHSP+E+VKQITS+SIEPGVEVEVTIAD
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
The following BLAST results are available for this feature:
BLAST of TCONS_00014705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS202.799e-6282.0540S ribosomal protein S20 OS=Homo sapiens GN=RPS20... [more]
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