TCONS_00014705-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014705-protein
Unique NameTCONS_00014705-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014705-protein ID=TCONS_00014705-protein|Name=TCONS_00014705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
VSFCSKIPDLSLHTRHHEERKAHRCSSLKLIFYRGLSRPRTIMSAFKEKQ
VQEEEAEIHRIRITLTSRNVKSLEKVCSELIRGAKDKKLMVKGPVRLPTK
TLRITTRKTPCGEGSKTWSRYEMRIHKRLIDLHSPAEVVKQITSVSIEPG
VEVEVTIADV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008231XLOC_008231Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014705TCONS_00014705Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR027486Ribosomal_S10_dom
IPR005729Ribosomal_S10_euk/arc
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 60..73
score: 41.48
coord: 95..110
score: 44.59
coord: 117..131
score: 53.85
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 58..157
score: 18.785
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 62..156
e-value: 1.8E-42
score: 157.1
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 62..156
e-value: 3.9E-29
score: 100.6
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 58..160
e-value: 2.1E-46
score: 155.9
IPR027486Ribosomal protein S10 domainSUPERFAMILY54999Ribosomal protein S10coord: 60..157
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 59..157
e-value: 3.6E-43
score: 144.0

Blast
[Close]
BLAST of TCONS_00014705-protein vs. Swiss-Prot (Human)
Match: RS20 (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.416e-65
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 0 
Query:   45 AFKE--KQVQEEEAEIHRIRITLTSRNVKSLEKVCSELIRGAKDKKLMVKGPVRLPTKTLRITTRKTPCGEGSKTWSRYEMRIHKRLIDLHSPAEVVKQITSVSIEPGVEVEVTIAD 159
            AFK+  K   E E  IHRIRITLTSRNVKSLEKVC++LIRGAK+K L VKGPVR+PTKTLRITTRKTPCGEGSKTW R++MRIHKRLIDLHSP+E+VKQITS+SIEPGVEVEVTIAD
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
The following BLAST results are available for this feature:
BLAST of TCONS_00014705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS208.416e-6582.0540S ribosomal protein S20 OS=Homo sapiens GN=RPS20... [more]
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