TCONS_00014668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014668
Unique NameTCONS_00014668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014668 ID=TCONS_00014668|Name=TCONS_00014668|organism=Clytia hemisphaerica|type=transcript|length=5441bp
ACCTGTTACTCAAGTTGTTATATTGTTATATTGTTTATATAGGGGTAAAA
TATAGTAAGGTTATTTCAAAGATTCTGACTAAATCTATTGActgattttg
tttttagataataagttaagaacaagaAAAGATAAAACACTTGGATAGAA
GAATACTCAGTGACAAAGAATGGATAATGAGGATATCAATCTAGTAGACT
CAGATACAGATTATGAAGATTCAGAGTTGAGCATATTAGGGGACAGTGAT
AGCGATGGTTTGGATACTTCGGATACATCAGATGATGATGCTGGTAGATG
GTTCAGTGAAGGAAGTATCTCCAATGCTTCCTCTGATTCTTCTCTCTACG
AATCTTTCGGTGAGGAAGgAGAAGCTGGTGGATTTTTCGAGcTGATGAAT
CaacatttggaaattttcaaccATGAGGCGGACTCCTTCTTCAGAGTCTC
CTTACGAACCTTATACGATACCTTGATGGAGTTTATGGAGGAACGAGTTG
GACCTACACCAAACCATATCATCCAATCTCTTCCCACTATCAAAGTCACT
CTCGCTCAGCTTGcgACGAACACAAGTTGTCCGATTTGTTTTGTCGATTA
CGAACCTAATGAAGAGTTGGTGAAGCTGCCTTGCAATCATTTGTATCATA
AACAATGTATTCTTAGTTGGCTCAAACTGaaatccaCTTGTCCCACGTGC
CGTTTGGATTTGAAAAAAGACGCACCAATAGAGACCATCGATTTGACCAA
CACTGAAATTGATAACCTTCTTGGCGGTGCGGAAAATAACGATGAAAATA
ATACGAACGAACAAGCGGACACTCTTCAACAATCGGACACTCAAACAAAT
AGTAATACAACACGTGGTATTTCCATCTCTTCGGAAGACGACATTGAAAA
TACAAACACAAACACAAACGAAGCGAGCGCCAACGTGCAAGCGCATCGAA
TTTTCTCGCGAAGTAGTTCACCCATACTCATTGTTGACTCGAGTGAAGAA
ACAGATAGCAATGCATCGCCATTCAGTTCAAAAGTTTCTATCGTTGATGC
TACAAGGCGAGAACTCAATACTGGTGCACGACCAAGACTGAATAGAGGTG
AAACTTCAAGGTCCAATGAGGGTAGCCAAGATAGACTAAATATTGCTTCG
TCTAGCAGTAGCCAAACCAAAGGAAATATTGATTCTGTTTCCAGGCTAGG
CAACAGTGAAAGCGACCTAAATAGACTTGAAAGATCTTATGATCAAAATA
AACCACATTTTAGTGGGTCTAGTAGTAGTAGCAGCTCACGAAACAAACTA
GATACTGGCGTGATACCAAAACTAAATAGAGGTGAAAATTCATCGTCAAT
AGATAACAGAATCAATGTTGGTGCAACAAGCAGTCAAAACAAACGGCAGA
CAACAACTCATACGATTAGCGAAGTACCGAAAAAACGCAAATCTAAAGAA
ACGGAAATTTGGTAGTTTTTGTTCCATGATATAATAGAGAAAAAACCTGG
TTTTGGTCTGGTCATCTTTTATGGAGCTGATTCATACGGTGGCCAACAAA
TGGCTTGTCACTGGTGGACCACCGTGTCTGCGGTTAACCGAATAAAAACG
AAAACTGAAAAGGTGGCGTTGTGACCGGTATTTGATCAGTGCAATCGATT
GATATCAGACGCATGTTTACCTTTATATCAAAAGCTGAACGATTGATTGT
GACGCTTTGACTGAGCGTGGGGttagaaatattatttttagtTGCTTTTT
GCACTTTGCGAACAACGAAATTTAGCGATGTTTTAGTTCGCTTCAAAAGA
CATTTGTGATACTAACATCATTTGTGAATAGGTGAATATGATAGGATTTC
ATAATAGGTCAGTTATTTTATGGGCCACGAGCTACTGAATTTACAAAAGT
GGCAGGACACATACATTACGCACACTTTACTGTCCCAANAGAATCAATGT
TGGTGCAACAAGCAGTCAAAACAAACGGCAGACAACAACTCATACGATTA
GCGAAGTACCGAAAAAACGCAAATCTAAAGAAACGGAAATTTGGTAGTTT
TTGTTCCATTATATGATAGagaaaaaactggttttggtCTGGTCATCTTT
TATGGAGCTGATTCATACGGTGACCAACATATGGCTCGGCACTGGTGGAC
CACCGTGTCTGCGGTTAACCGAATAAAAACGAAAACTGAAAAGGTGGTGT
TGTCTCCGGTATTTGATCAGTGCAATCGATTGTTATCAGACGCATGTTTA
CCTTTATGACAAAAGCTGAACGATTAATTGTGACGCTTTGACTGAGCGTG
GGGTTAGAAGTATTATTTTTAGTTGCTTTTTGCACTTTTCGAACAACGAA
ATTTAGCGATGTTTTAGTTCGCTTCAAAAGACATTTGTGATACTAACATC
ATTTGTGAATAGGTGAATATGATAGGATTTCATAATAGGTCAGTTATTTT
ATGGGCCACGAGCTACTTAATTTACAAAAGTGGCAGGACACATACATTAC
GCACACTTTACTGTCCCAACTATGTTCACCTTTCCATTGCTATTGTCCCT
CCTTCCTACCTCCTCTTGATCTTGCAAAACTTATACACattacacgtttc
tttttttaaagcaaatcAGTGTGGCCTGAAAATATTAGATATATTGTGTT
CTTAGGTCTACTGTATCGTACTGTGACAGAACGATAGATACAAATCAGGT
CAATTGATCTCTTTGCTCATGAAATTAATGCCTTTTAGAAATCCAAACTA
TGATATAATATTTAGCATAATCAATTATAACCGATAGATAGTCATCaggg
tttttttatatttttgcaatatttatAACAGATAGTttgctttttcataa
atttctccCTTAATTGCTGCTAGCTGCTTAGTGTAAAGATGAGATGAATA
TAACAACTGAAACCGATAATAAGTCAATAATTTTATAAAGCATTCATGAT
CAGATGCAGTTTGTAAAGTGCTTCAGGACCGTCTGAAAAAATTGTGATTC
TGAAATAAGTCGCAGaggaaaagaaattcaaaagacTAAAATCACAATTT
TTACGCACTTATGTTCTACAACCTTACACATTTGTTTTCTAATGTATTTC
ATCATTCTTTGAGTTTGTCAACCATGATTGTTTTGTATGCATCCCACCGG
ATTTTTGCGTGTAGCTTCTCCAAAGTGGGCGCATAGGAATTCCTCTCCTG
TGACATCAGTTTAGAAATAGTACAAAAGTCGGCGTATCTCAttagtttgt
ttttgttgatcAAAAGACACTCAGCACCGTTGCTAACCAAAATTGTTTTC
TCCGTTACTAAGGCTTTCGGATAACTGTCTGCTGAATCACTTATGATTGT
TCGTACCATGTTTCGAACGCGCGGGAGGAGCGAGTCCAACCCGTAGATAT
CCTTATGGTGGATTGTGCTGACTACAACATAGTCTTGATGTCTCAGATCG
TTTTTGATTGTTAAGTGAGGCAATCGACGAAGAAAGTGATTGGTTTGAGA
ATTATTGAGTGTCTTCTTAGAATCTTCCGTAGAATTTAGAGAAATGGAAG
GGATATCAGAACGTCTCATATAAACACTACACGAACCAGCTTTGACGATG
TAAATGAATGGAGAATCATGAATATTTCTTTCAATGACGTCACTTTTAGC
GTAGAATTCGACTCTCGTCGACTCGGTGGCGTTAACGAGCTGCTCGATTG
GATATGTCTTGAATAAGTCGATTGATTCGAGTAAAAGCTGTTTTGATAGT
TGTGTCTCTTGTGTGAAAAAGATAGTTTGAAGATGTTCCCTTTCCAGTAG
AAAAACTTCAACGTCAGttttacagaccagactatACTGTCGTTTGTTGG
TCTGTAAAGTCTCGTTCAGATCGGTATAAAAGCCATGGCTCAGTTCTTGA
AGATAACGTTTTCTAACGCCCTCAGCTAAATGAAgtgtttttacttttga
aacaaGTCCGGATAGGATGAAATAAAACCGGTCACTTGTGCGATTTTGTA
AGCATATCACCCTTCCCGGATCATAACTCTCATATCCGACCATTTTTGCC
AGTCCGTCGTGTTTGTCCCTGGAGAACATTTGGAAAACTTTGTATTTGGA
TAAAATGAGCGTAATTTTCTTCTTATCTAAATCACTTCTTCGTTCGGGAT
GAACTTTCAAACATTCTTTCACGTCATCTGATAGTTTGTTCAAAACTGAG
AAATTTCGTGTATCGAAGTTGATGCTTGGGTTATTTTTCTTTGACCGAAT
TGGTGGAAGTATGTTTTGTTGTCGATCTTCAGGTCGTCCAACTCCGATCT
GCATCAAGAGTTTGTTATCATACAGTTTCCAGTAGCGCGGTATTCGACAA
ATAATACAGACAACTTTTACTTTGCGACAAAATTTGTGTAGTGAAGACTG
AGAGAAAGCATGACATTCGAAGCTCGTATTGGAGTTTAAAAATCGTTCAG
TTTTTTTTACAAGAGCTTGAGTAAGCAGTGGAGAAATGATCGCGTTTTGC
GATTCCTCCACGAAGCGACGGATTTCATTTTCACGTGTTTTCAATTCTTG
TTCTAAATTCCTTGACAGTTGACTTGGTTTAATTTGTAGCCTCTGGTAAA
CGGTCTCTTCCTTACGCAATATGAAATCTCTCGTCTTTTTCTTGGTCACC
GGAGGCTGTTGATAGTTTAATGGTGATAGTCCAATCCCTTGATTTGCATC
TATCGACTCTTCGTAGTCTATATCTAATATTTGTCTTTGATATGCTTCTT
GCATTTGTAGACTATCAAATTATCTTCAAAATGCGGGTTTCTTCAATTCT
CATGTATTAGAATGCGACACTGTTTTTGAGTTGCTTTGCGGGATTCTTGG
TAGACGAGTTAGACTGATTTCACACGTCTATACAATAGCCATACGAGTCT
CTCTTGTGTATTGTATTCTCTTATCTACCTCGCGTTTCTGTGACAATCCG
TACTTTAAAAACAACGTCCTTTTTTTCCTGACATTGCTTTATCCTTTCAA
AATAGAAagtgagattttttttattcctCGTATATTTTGATCATAAAAAC
GTACGAAAGGCGGTTTCATAAACTGTAAAAAAGGAGAAAGGATTTAGCAC
GATGCTTTTCCCTTGGACCTCTCTAATCTTGTTAGTTTTCATCCTTTTCT
TCTAAAACCGCGAGAAATTTTTCGTTCGCAATAAATATTGATCAACTGTT
TTGTCTTTTAAACCAGACGATATTTTTGGATCACGGGTATTTGAATGATC
TGAAGATTAGaatgctttctttcttttcatcttATCCGGATACATAGATG
AATTTACAGTACATGCAATCGGTGACGAAATACTTAacacaaaagggaaa
tccaccgggaagttttgaaaccacaatcgatttgcaagtgctctaaagta
ggttcgaagggtagagttttaactctgagttttaacgctag
Run BLAST on NCBI

transcript from alignment at sc0000197:52745..63000+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014668 ID=TCONS_00014668|Name=TCONS_00014668|organism=Clytia hemisphaerica|type=transcript|length=10256bp|location=Sequence derived from alignment at sc0000197:52745..63000+ (Clytia hemisphaerica)
ACCTGTTACTCAAGTTGTTATATTGTTATATTGTTTATATAGGGGTAAAA
TATAGTAAGGTTATTTCAAAGATTCTGACTAAATCTATTGActgattttg
tttttagataataagttaagaacaagaAAAGATAAAACACTTGGATAGAA
GAATACTCAGTGACAAAGAATGGATAATGAGGATATCAATCTAGTAGACT
CAGATACAGGTAATATCCTTTCAGCTTTATATCGGTTTCCATAGCTACTT
GAACAAAGAAActtgtcattttattgatgtAAATTAACCCAAGTTGCATT
AATTATaacaattaaagaaaaaaatagatcCAGTGATAGGCTCAGAATCT
TTAGGTGCTTTAAATAAAGCACAGTTGAAAAGAAGAgttttaagttgttt
ttttatgagagtTAAGCTTTAGCTCAGGACCTTAGGCtctaaaagctaaa
aaatgttaCAATAATAAAGCCTAGAATGTATTACGCAATTCTCGCCCGTG
CTTTAAAGTCTGAAAAAAAAGACGTTCAAATGCCCAAAATTTTCGATATA
TTTCGGCGGTGATTGTAGAAAAAAACTTCTGGAATATTTTCACCCTCATT
TTTAGATTATGAAGATTCAGAGTTGAGCATATTAGGGGACAGTGATAGCG
ATGGTTTGGATACTTCGGATACATCAGATGATGATGCTGGTAGATGGTTC
AGTGAAGGAAGTATCTCCAATGCTTCCTCTGATTCTTCTCTCTACGAATC
TTTCGGTGAGGAAGGTAAGCTGTTGTTCTctcctttgtttttctttgaac
tGGGTGTTTATATTCATGTAGAATGAAgtcaaaatcactaaaattgtgta
aaaatcaaatttgttacAGAGGTTTAGAGGAAATgttcgaaatctaaaaa
aaaactccACTTCAAGGAAGCCGGGAACAACCTGAAATCTATTGTGGCTG
acataataatttttttctactATTCAACCTGATTATTATTTTGTGAAAAC
ATCTTTGGCCAGATAGGAtgttaatacacgttttttacaagaacaaacta
taaaagaacaaaAGACTTTAAAGGCCCAAATATTAAGAGAAGAGAAGTTA
AGAGCATTATAAGGTTTTGTGAGCTCTAAAACACCGGATTTATtaggaaa
acggacaaaaatgcttaaaaatttaagaacatccgaaggctttaaaaatt
ttgtatgttcttataaaaaaaatgtactcGAAGTgtgtaattttttctaa
tttttttaggAGAAGCTGGTGGATTTTTCGAGGTGAGTTAACTTTTACTG
TATTTagtattttcacatcaaaataaactgggagtttctaaacatcaacc
agaaatggcgaccacgaccagcgaccacgaccggcgaccagataaatttg
ggttatcaaGTTTTCCTCTTTCTTCACCGTAGAGTCTTTCtcttatgatc
atttatttatcgaattgaagagtttatctggtcgctgttcgtggtcgccg
gtcgtggtcgtcatttctggtcgacgtttagaaactcccctttacacgtt
ttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctt
ataaaaaaaatacgtgtatcagttttgaatttgaaacaATAACTTCAGCT
GGCAAATTTTCGTCTTTCATTGAATGTATATGAAATTTTCAACCATCGTG
AATATCTATAAGTCAAACGAGTATTGCtataaattttataagaactctct
ATAGAGATTTTCTGATTGTTTAGATATGATGATGATTGTTCACCTACAAA
TGAGAACTATTAGCTCAAGACAAATATTCCTCTATTTGAATTTTCAAGCA
TCTTTCTTCCTTCTTCAAAGCATCATAGAAGGattgttgttttttatatt
ttgaaaagtaTTTGGTTTTTAGTATGATGTATGGTTTTGATAATTCCTCG
TTGTGGAAAAAAGGCCAGCGTTTCTATTTTATGCAGATGTGTTTTTCTTA
GTATTGGTGTTTAATTGCCCTTAATAATTAATTGGCAATtacttgaagaa
aaaagttcacACATTTTCGAATCTCTTGAATGACTCAAAAGAGCATTCGG
TGTGTTTCATCAACTTGTTATTGCTTGCTGCTATTTTTTGCCGCTAATTA
CATCTTAATTGCTCTAAAAACACGCTTCTTTTTTTACGAATAAAAATCGC
ACACTAAAATAAGACACTATTTTTAACTACACATTGATGTTTAGTGGCAT
TATTTCTTCTTGGATATTGAAAGTAAGAATTTTTATTATTGAGGAAAGGT
TTTACTTCGAGTCTCGACAATTAATGATTGGAATTATGTTTAAAGAGTTT
TGATATAAGGCCGGAAAAAGATCTAGTCCCAATCCACTATTATGGTGCAC
AAATGACGCGATAACTGTGTCTTCAGGTGGCTTATATCTCATaatgaaat
aatattttttttcactttttcagcTGATGAATCaacatttggaaattttc
aaccATGAGGCGGACTCCTTCTTCAGAGTCTCCTTACGAGTAAGTGTTTT
AATGATATTTGCTAATGTGATCTCTTTCCTTTTATATTGATCTGGGATGC
TGGAATTGATGTAATAAGGCAAACTTGAGCATGGTCAGTCATGAATAAAA
CTGCCAAAATGTCGTCGGCgttagtgttgatagtttcagCAGTTATTTTG
ATGTCAAAGAACAATTGCCTGCTTAATGAATTTCTGCCAAAAGTACCAAT
TTTTTCAGAAGCTCACAATCCTAGAATTTTATCCATTCATTTTGGCACAG
TTGAATTTAATTTGTGACCGCTGGGCTTATCTTTCTCAACAAGGGGTGTA
CAGGCGATATGGAATACATACTATCTTAAGTCAGTTTACAGAAGTGTGGT
CAACCTTTTTTGCTGCGGTGTTTTAGGTACCACTTTCAAGGGAATTACTC
TCGTTAGAGCATCATTTCCACttgaaagtcaaaaaaattgcaagcTGTTT
ATCTTAAACAGATTCTTCTAGGTTTCTCTAATATTTATTACCCCTTTGTT
TTGTTTAGACCTTATACGATACCTTGATGGAGTTTATGGAGGAACGAGTT
GGACCTACACCAAACCATATCATCCAATCTCTTCCCACTATCAAAGTCAC
TCTCGCTCAGCTTGGTACGTTAGTTAAGTTTCGTTTGGATTTTGTTATag
ttttttgagatattttcctAGCTTTTAATGTATAGAATCTTATAACAGAT
CATTGTTTCTGTCAGCACCAAGCTCTGCTAAAGGAATACTATGATGTGAT
GATTTTACGAGCTTCGCGTCGTTGAACCTCGAGTTAACAAGGAAATGGTA
GTACCTAATGAAAGACCACGTAAAATAATATGTTTGTTATTAACCGAgta
atttctatttcttttcatttagcGACTAACACAAGTTGTCCAATTTGTTT
TGTCGATTACGAACCCAATGAAGAGTTGGTGAAGCTACCTTGCAATCATT
TGTATCATAAACCATGTATAGTTAGTTGGCTCAAACTGGTAAGCCatctt
tttgtaaaaagtcCTCGAGGAAAATaacatacagttgactctctctaatt
cgatcttcaagggatcgaggaattttcttcgaattagagaaagattcgaa
ttacagaaagtgttttatactaatttctagctaaggggacaaatattttt
gttcgaattatagaaagattcgattaGTAGAGGCTCGAATTAGGGAGAGT
TCACTGTAGTTCGACCTCTCCCTTTCTTTAACGTGAAACAGTTTTTTGAC
TAAGCGGATGCTGAGAAACAAGAACCCTGCCACACTATGACTCAATTTCT
AATAACATTGATTAGAGAATACCCCTGTTTTATTAACCCTGTTATAAAAT
CAATTGCGTGGAAATTAATTAAAGTCATTATTGATGAAGATTTGCTTGCT
TTTAATGGATAAGGgtttcaattttaaagttttagtGGGTATTCTCAAAC
TTGTATTGTATTTTCAATTGGGATGAGAATtcagtgtaattttttttgag
acCTTCTTTTGTGTCAATTTAAAACCCAAATCTCAATTTATGAAGGCtat
cattatttttatttttttagaaatccaCTTGTCCCACGTGCCGTTTGGAT
TTGAAAAAAGACGCACCAATAGAGANNNNNNNNNNNNNNNNNNNATATTT
TAGTCTGGTGGTCTGATCAACACTGAAATTTTCGCAGGATTAGCTACTTC
AATACTATTACAACTCAACcgaacttttcctaatcaacCACTACATCACC
AACAAGTTAtactttctgttttctttttctgcAATTTTGCGATCTCTGTC
AGTATCCTTGAGTtctgttttgtgttttgtttctacagttTTACGTTTAC
AATCTGCAATTTTGTGAGCTTTGTCAGTATtcttgagttgttttttttgt
gtgttttgtttctacagcataattttttttcatagaatataattatcttt
ttatttaaatatgattatttttacataggacgaatagccattgtaaaata
tggaagagcctgaaagacaattaataataataataaaaataaataaaaaa
tgaatatcaCTTACCTCGAGTTAACAAGGAAATGGTAGTACCTAATGAAA
GGCCACGTAATAATATGTTTGTTATTAACCGagtaatttctatttttttt
catttagcgACGAACACAAGTTGTCCGATTTGTTTTGTCGATTACGAACC
TAATGAAGAGTTGGTGAAGCTGCCTTGCAATCATTTGTATCATAAACAAT
GTATTCTTAGTTGGCTCAAACTGGTAAGCCATCTTTTTGTAGACAAAAAG
AGTCCTCCAGGGAAGTAATATACAGTTGacaattcgatcttcaagggagc
aaggaattttcttcgaattacatAGTGTTACAAGTGTTTTATACTAATTT
CTAGCTAAggggacaaatatttttgttcggattatagaaagattcgaata
gtagaggttcgaattagggagagtcCACTGTAGTTCGACCTCTCCCTTTC
TTTAACAAGAAACAGTTTTTTGACTAAGCGGATGCTGAGAAACAAGAACC
CTGCCACACTATGAATCAATTTCTAATAACATTGACTAGAGAATACCCCT
GTTTTATTAACCCTGTTATAAAATCAATTGCGTGGAAATTAATTAAAGTC
ATTATTGATGAAGATTTGCTTGCTTTTAATGGATAAGGgtttcaatttta
aagttttagtGGGTATTCTCAAACTTGTATTGTATTTTCAATTGGGATGA
GAATtcagtgtaattttttttgagacCTTCTTTTGTGTCAATTTAAAACC
CAAATCTCAATTTATGAAGGCtatcattatttttatttttttagaaatcc
aCTTGTCCCACGTGCCGTTTGGATTTGAAAAAAGACGCACCAATAGAGAC
CATCGATTTGACCAACACTGAAATTGATAACCTTCTTGGCGGTGCGGAAA
ATAACGATGAAAATAATACGAACGAACAAGCGGACACTCTTCAACAATCG
GACACTCAAACAAATAGTAATACAACACGTGGTATTTCCATCTCTTCGGA
AGACGACATTGAAAATACAAACACAAACACAAACGAAGCGAGCGCCAACG
TGCAAGCGCATCGAATTTTCTCGCGAAGTAGTTCACCCATACTCATTGTT
GACTCGAGTGAAGAAACAGATAGCAATGCATCGCCATTCAGTTCAAAAGT
TTCTATCGTTGATGCTACAAGGCGAGAACTCAATACTGGTGCACGACCAA
GACTGAATAGAGGTGAAACTTCAAGGTCCAATGAGGGTAGCCAAGATAGA
CTAAATATTGCTTCGTCTAGCAGTAGCCAAACCAAAGGAAATATTGATTC
TGTTTCCAGGCTAGGCAACAGTGAAAGCGACCTAAATAGACTTGAAAGAT
CTTATGATCAAAATAAACCACATTTTAGTGGGTCTAGTAGTAGTAGCAGC
TCACGAAACAAACTAGATACTGGCGTGATACCAAAACTAAATAGAGGTGA
AAATTCATCGTCAATAGATAACAGAATCAATGTTGGTGCAACAAGCAGTC
AAAACAAACGGCAGACAACAACTCATACGATTAGCGAAGTACCGAAAAAA
CGCAAATCTAAAGAAACGGAAATTTGGTAGTTTTTGTTCCATGATATAAT
AGAGAAAAAACCTGGTTTTGGTCTGGTCATCTTTTATGGAGCTGATTCAT
ACGGTGGCCAACAAATGGCTTGTCACTGGTGGACCACCGTGTCTGCGGTT
AACCGAATAAAAACGAAAACTGAAAAGGTGGCGTTGTGACCGGTATTTGA
TCAGTGCAATCGATTGATATCAGACGCATGTTTACCTTTATATCAAAAGC
TGAACGATTGATTGTGACGCTTTGACTGAGCGTGGGGttagaaatattat
ttttagtTGCTTTTTGCACTTTGCGAACAACGAAATTTAGCGATGTTTTA
GTTCGCTTCAAAAGACATTTGTGATACTAACATCATTTGTGAATAGGTGA
ATATGATAGGATTTCATAATAGGTCAGTTATTTTATGGGCCACGAGCTAC
TGAATTTACAAAAGTGGCAGGACACATACATTACGCACACTTTACTGTCC
CAANAGAATCAATGTTGGTGCAACAAGCAGTCAAAACAAACGGCAGACAA
CAACTCATACGATTAGCGAAGTACCGAAAAAACGCAAATCTAAAGAAACG
GAAATTTGGTAGTTTTTGTTCCATTATATGATAGagaaaaaactggtttt
ggtCTGGTCATCTTTTATGGAGCTGATTCATACGGTGACCAACATATGGC
TCGGCACTGGTGGACCACCGTGTCTGCGGTTAACCGAATAAAAACGAAAA
CTGAAAAGGTGGTGTTGTCTCCGGTATTTGATCAGTGCAATCGATTGTTA
TCAGACGCATGTTTACCTTTATGACAAAAGCTGAACGATTAATTGTGACG
CTTTGACTGAGCGTGGGGTTAGAAGTATTATTTTTAGTTGCTTTTTGCAC
TTTTCGAACAACGAAATTTAGCGATGTTTTAGTTCGCTTCAAAAGACATT
TGTGATACTAACATCATTTGTGAATAGGTGAATATGATAGGATTTCATAA
TAGGTCAGTTATTTTATGGGCCACGAGCTACTTAATTTACAAAAGTGGCA
GGACACATACATTACGCACACTTTACTGTCCCAACTATGTTCACCTTTCC
ATTGCTATTGTCCCTCCTTCCTACCTCCTCTTGATCTTGCAAAACTTATA
CACattacacgtttctttttttaaagcaaatcAGTGTGGCCTGAAAATAT
TAGATATATTGTGTTCTTAGGTCTACTGTATCGTACTGTGACAGAACGAT
AGATACAAATCAGGTCAATTGATCTCTTTGCTCATGAAATTAATGCCTTT
TAGAAATCCAAACTATGATATAATATTTAGCATAATCAATTATAACCGAT
AGATAGTCATCagggtttttttatatttttgcaatatttatAACAGATAG
TttgctttttcataaatttctccCTTAATTGCTGCTAGCTGCTTAGTGTA
AAGATGAGATGAATATAACAACTGAAACCGATAATAAGTCAATAATTTTA
TAAAGCATTCATGATCAGATGCAGTTTGTAAAGTGCTTCAGGACCGTCTG
AAAAAATTGTGATTCTGAAATAAGTCGCAGaggaaaagaaattcaaaaga
cTAAAATCACAATTTTTACGCACTTATGTTCTACAACCTTACACATTTGT
TTTCTAATGTATTTCATCATTCTTTGAGTTTGTCAACCATGATTGTTTTG
TATGCATCCCACCGGATTTTTGCGTGTAGCTTCTCCAAAGTGGGCGCATA
GGAATTCCTCTCCTGTGACATCAGTTTAGAAATAGTACAAAAGTCGGCGT
ATCTCAttagtttgtttttgttgatcAAAAGACACTCAGCACCGTTGCTA
ACCAAAATTGTTTTCTCCGTTACTAAGGCTTTCGGATAACTGTCTGCTGA
ATCACTTATGATTGTTCGTACCATGTTTCGAACGCGCGGGAGGAGCGAGT
CCAACCCGTAGATATCCTTATGGTGGATTGTGCTGACTACAACATAGTCT
TGATGTCTCAGATCGTTTTTGATTGTTAAGTGAGGCAATCGACGAAGAAA
GTGATTGGTTTGAGAATTATTGAGTGTCTTCTTAGAATCTTCCGTAGAAT
TTAGAGAAATGGAAGGGATATCAGAACGTCTCATATAAACACTACACGAA
CCAGCTTTGACGATGTAAATGAATGGAGAATCATGAATATTTCTTTCAAT
GACGTCACTTTTAGCGTAGAATTCGACTCTCGTCGACTCGGTGGCGTTAA
CGAGCTGCTCGATTGGATATGTCTTGAATAAGTCGATTGATTCGAGTAAA
AGCTGTTTTGATAGTTGTGTCTCTTGTGTGAAAAAGATAGTTTGAAGATG
TTCCCTTTCCAGTAGAAAAACTTCAACGTCAGttttacagaccagactat
ACTGTCGTTTGTTGGTCTGTAAAGTCTCGTTCAGATCGGTATAAAAGCCA
TGGCTCAGTTCTTGAAGATAACGTTTTCTAACGCCCTCAGCTAAATGAAg
tgtttttacttttgaaacaaGTCCGGATAGGATGAAATAAAACCGGTCAC
TTGTGCGATTTTGTAAGCATATCACCCTTCCCGGATCATAACTCTCATAT
CCGACCATTTTTGCCAGTCCGTCGTGTTTGTCCCTGGAGAACATTTGGAA
AACTTTGTATTTGGATAAAATGAGCGTAATTTTCTTCTTATCTAAATCAC
TTCTTCGTTCGGGATGAACTTTCAAACATTCTTTCACGTCATCTGATAGT
TTGTTCAAAACTGAGAAATTTCGTGTATCGAAGTTGATGCTTGGGTTATT
TTTCTTTGACCGAATTGGTGGAAGTATGTTTTGTTGTCGATCTTCAGGTC
GTCCAACTCCGATCTGCATCAAGAGTTTGTTATCATACAGTTTCCAGTAG
CGCGGTATTCGACAAATAATACAGACAACTTTTACTTTGCGACAAAATTT
GTGTAGTGAAGACTGAGAGAAAGCATGACATTCGAAGCTCGTATTGGAGT
TTAAAAATCGTTCAGTTTTTTTTACAAGAGCTTGAGTAAGCAGTGGAGAA
ATGATCGCGTTTTGCGATTCCTCCACGAAGCGACGGATTTCATTTTCACG
TGTTTTCAATTCTTGTTCTAAATTCCTTGACAGTTGACTTGGTTTAATTT
GTAGCCTCTGGTAAACGGTCTCTTCCTTACGCAATATGAAATCTCTCGTC
TTTTTCTTGGTCACCGGAGGCTGTTGATAGTTTAATGGTGATAGTCCAAT
CCCTTGATTTGCATCTATCGACTCTTCGTAGTCTATATCTAATATTTGTC
TTTGATATGCTTCTTGCATTTGTAGACTATCAAATTATCTTCAAAATGCG
GGTTTCTTCAATTCTCATGTATTAGAATGCGACACTGTTTTTGAGTTGCT
TTGCGGGATTCTTGGTAGACGAGTTAGACTGATTTCACACGTCTATACAA
TAGCCATACGAGTCTCTCTTGTGTATTGTATTCTCTTATCTACCTCGCGT
TTCTGTGACAATCCGTACTTTAAAAACAACGTCCTTTTTTTCCTGACATT
GCTTTATCCTTTCAAAATAGAAagtgagattttttttattcctCGTATAT
TTTGATCATAAAAACGTACGAAAGGCGGTTTCATAAACTGTAAAAAAGGA
GAAAGGATTTAGCACGATGCTTTTCCCTTGGACCTCTCTAATCTTGTTAG
TTTTCATCCTTTTCTTCTAAAACCGCGAGAAATTTTTCGTTCGCAATAAA
TATTGATCAACTGTTTTGTCTTTTAAACCAGACGATATTTTTGGATCACG
GGTATTTGAATGATCTGAAGATTAGaatgctttctttcttttcatcttAT
CCGGATACATAGATGAATTTACAGTACATGCAATCGGTGACGAAATACTT
Aacacaaaagggaaatccaccgggaagttttgaaaccacaatcgatttgc
aagtgctctaaagtaggttcgaagggtagagttttaactctgagttttaa
cgctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008214XLOC_008214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014668-exon-sc0000197-1491911889:52745..52953TCONS_00014668-exon-sc0000197-1491911889:52745..52953Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:52745..52953TCONS_00014668-exon-sc0000197-1510915933:52745..52953Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:52745..52953TCONS_00014668-exon-sc0000197-1575043694:52745..52953Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:53350..53508TCONS_00014668-exon-sc0000197-1491911889:53350..53508Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:53350..53508TCONS_00014668-exon-sc0000197-1510915933:53350..53508Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:53350..53508TCONS_00014668-exon-sc0000197-1575043694:53350..53508Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:54004..54026TCONS_00014668-exon-sc0000197-1491911889:54004..54026Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:54004..54026TCONS_00014668-exon-sc0000197-1510915933:54004..54026Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:54004..54026TCONS_00014668-exon-sc0000197-1575043694:54004..54026Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:55318..55383TCONS_00014668-exon-sc0000197-1491911889:55318..55383Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:55318..55383TCONS_00014668-exon-sc0000197-1510915933:55318..55383Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:55318..55383TCONS_00014668-exon-sc0000197-1575043694:55318..55383Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:55903..56008TCONS_00014668-exon-sc0000197-1491911889:55903..56008Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:55903..56008TCONS_00014668-exon-sc0000197-1510915933:55903..56008Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:55903..56008TCONS_00014668-exon-sc0000197-1575043694:55903..56008Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:57552..57667TCONS_00014668-exon-sc0000197-1491911889:57552..57667Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:57552..57667TCONS_00014668-exon-sc0000197-1510915933:57552..57667Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:57552..57667TCONS_00014668-exon-sc0000197-1575043694:57552..57667Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1491911889:58239..63000TCONS_00014668-exon-sc0000197-1491911889:58239..63000Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1510915933:58239..63000TCONS_00014668-exon-sc0000197-1510915933:58239..63000Clytia hemisphaericaexon
TCONS_00014668-exon-sc0000197-1575043694:58239..63000TCONS_00014668-exon-sc0000197-1575043694:58239..63000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:52745..63000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3608	12.449	5.1583	3.47864	40.7419	31.7917	17.3294	18.2305	16.3424	12.7401	28.7478	37.4481	49.7071	55.3623	36.1675	32.3613	13.7498	22.0797	17.2574	12.3303	14.8309	14.0246	20.9426	20.7313	16.4493	17.7211	8.54153	10.635	14.3384	15.6208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR000595cNMP-bd_dom
IPR018490cNMP-bd-like
Blast
[Close]
BLAST of TCONS_00014668 vs. Swiss-Prot (Human)
Match: RN115 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.972e-16
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:  491 ERVGPTP--NHIIQSLPTIKVTLAQLATNTSCPICFVDYEPNEELVKLPCNHLYHKQCILSWLKLKSTCPTCRLDL 712
            E  GP P     I SLPT+ VT  Q+     CP+C  DY   EE+ +LPCNH +H  CI+ WL+L  TCP CR  L
Sbjct:  197 ENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
The following BLAST results are available for this feature:
BLAST of TCONS_00014668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1155.972e-1647.37E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens... [more]
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