TCONS_00014636 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014636
Unique Name	TCONS_00014636
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4076

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000191:379384..383459-

transcript sequence

>TCONS_00014636 ID=TCONS_00014636|Name=TCONS_00014636|organism=Clytia hemisphaerica|type=transcript|length=4076bp
TATCCATTCAACAAAATGATGTAGTTTTGAGATTTGATAATAACGTGTGA
CCTGAATTCCACACAGCACAGTATTCCTGTATTTATTGTGACGTTTGTCG
AGAGGTGTTGGCAGCTAGGATACGCCTGCCTTTTCATGaagtgttttgtt
ttgttatcGAAGAATGGCCAAgtgatttttcatcaaataaacATTCTTGA
TAATTGTGACGTGTGCATGGGTCTTCATATTGGAAAATGTTCACACCATT
CCGTTAGATTCCATCGTTCAATAAGGTTTATTGATTTGAAACCCAGGTCC
GAAAATCTTTCACCCATTTTAATTCATCTTTTTGTTCTAATTTCAGCtaa
taatcaaaaaagaaattatcaagAAATTAAACATCATTAACTTGTTGAGT
TGGCACATTACAAGAATTGTTCGATAAGGATTACCGACACTCCGCCATGT
TTTTAAGCGAGGAAATTTACGGGAAACCGCTGGACATAGGAGGTGGTACA
GAGCTGATCACCGCACGGAATAACACGACATCAATCACAGGATCACAGAA
CGAAGAAAATGGTAGTAACGGCGGATTATATATCGGTGTTGTATTCTTTT
ACACGTTCGTCGCTTTCCTCGGACTTTTGAGTAACACGTTTGTATTACTG
ACCGTCTTCAAGCGATATGTATCTCGAAACACAGTCAACACTTTCTTGTG
CAGTTTAGCTACGTCAGATTTATTGATGGTGATTCTCTCAATGATGGATT
TCGCAACCTTTTTGAACGGAACCTGGGTGTTTGGTGAAGTGCTCTGCAAA
ATCCAGAGCTACATTTTAGAAATAAACTTCACAGCGTCCACTCTGACCTT
GGTTGCAGTTTCATTCGAAAGGTATTTACTGATTTGCCACCCGTACATGA
AGAGAAGGTCCATCAAATCCATCTATAAAATCATTGGTGCTGTTTGGCTC
ATCGCGTTCTTGATTTGCTCGCCCCTCTTACACGGTTACGCGGTTACAGA
AGAGATGAACAGAGAAAGTGGTGACCTGTATCTCCGTTGTCACAATACGT
GGGGTTTAAAAGGTGAATTGGCTTTCTACAGTACCTACTCTGCAATCACC
TACCTTTTCCCCTTCGTCCTCATGGCGTTCGCACATTGGAGAATCTCGCT
CTCCATCAAAGAGAACAACGACCGCCGCGCGTCCGCCTCAGCTCAAAGCA
CCTTGATCAAAGAGAAGAAATCGAGTGTGTGCTACACCATTCGCGAGGAG
CCAAGCAGTTCCACCAGCACTGAACGCACTGCTGTGGAGGAGGTGGAACC
CACGCCCGCACCACCACCACAACAAGACTCACCGCCCTCGTCCAAAGGAT
TACCGAAATCCTTTCTCCGATCAATCAGTGGACTGTCCACGCGCACACGC
TCCTCCTTCGCTGCCGACCGTGAGATATACCGACGTGAGAAACGTGTCAA
AGCTATCCGTCTCTTGTTTGTTGTCACTATCACCTTCTTCATGCTGTGGA
CGCCGTTCATCATCCTACGTTTGTTACGCGACGCTGGCGTTCACGTCAAT
AAATATCTGTACACATTCTCTGAGATAATAATTTTTAGCTCGACCGCCGT
CAATGGCTTCATTTACGCGTTCATCAGTAGGCCGTTCAGAAAcgcgttta
aagctattttgtgTTGTCGCACACACCGTGACGCGGTTTCTAGAGACTCT
GGACCAAGTATGAGTAACTCTGAAGACAACAGACTTGCCAACCGTGGAAA
CTACTCCAGCAGAGGTTCAGTCACTTACTCATCGGACAATAAAAATGGGA
ATGCCCCAAAAATTTATTCTCAATTGAACGCAAATGGACATCACCATATG
GTGAATGACGTTTGATTACGtcattatcttttgaaaaacttttactacGT
TGTTTGCTGTACATATTCTTTTATTCGtaaaaccatgaacatataaacgg
cTGGACGTCTAtgttttattgtctctttgaagcgagcttcgttgccgcct
gtatttcaaaattggtatgaaaaatccgacaatactccgtcataatttta
tttctttgaattatttaggtaaaaggattgatagagcttgaacattactc
ctaatgtacaaaaaaattattttcgaatttttttacaagtttgcgGCTAA
TCGCCCGTGTAAGAAGCACAACTGACGTCATCAAGCTGCATTCAGTTACC
CTTGCATCTGTTTCTATCCGTTTTAACATAACATTAAACTTCGCTGGATC
GACGGATCAACGGATCAATGGATCGTTAAATCGTTCGATAGATTGACGGA
TCAGTGGCTCAACGGATCGATGGATCAAAGGATCGACGGATCAAGGATCG
ACGGATCGATGGATCAAGGATCGACGGATCGATGGATCAAGGATCGACGG
ATCGATGGATCGACGGATCAAGGATCGACGGATCGACGGATCAAGGATCG
ACGGATCGACGGATCAAGGATCGACGGATCAAGGTTCGACGGATCAATGG
ATCGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCGATGGAT
CGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCAAGGATCGA
CGGATCGACGGATCAAGGATCGACGGATCAAGGATCGACGGATCAATGGA
TCGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCGATGGATC
GACGGATCAATGGATCAACGGATCAACGGATCAAGGATCGACGGATCAAT
GGATCAATGGATCGACGGATCGATGGATCGTTGGATCGACGGATCAACGG
ATCGATGGATCAATGGATCAATGGATCGATGGATCGACGGATCAATGGAT
CGATGGATCAATGGATCGATGAACCGACGAATCGATGGATCAATGGATCA
ATGGATCGACGGATCATTGGATCAATGGATAGATGGATCGAATAAGGAAC
TCGTGTAGCTTATGTAACATATGgcatgaaataataaaaaaataagcatg
aaaaatacttttaaaaggtATATAACACTCAATGGTTTGGaacaaatgtc
aaattttgggaaaatggtGATGTCATTTTAACACCTTCCATCGTGTTTTA
CACACATTGAGTTCAGTACATTTTCAGACATtttcgtaagcaaaaaagtt
gttgagtgtaaaaaatcctttccaacggtatataatggTATTTAATATGC
CTAAACCATTATTTTATCGACGATATGTTTCCTGATCTTTAAACGACCTT
CAGAAATGCATGTTTTTTTATGACTATCTAAATGGATTACATGCAAACAT
CAAATTTACCATCGAGGAGGAGACTAACGGTATGCTACCACTTTTGGACG
CTAAAGTGACCAAGGCTGATGGTAAATTCCTAACGAATACGTATTATAAG
CCTACTCGCCATGGGCTGTACACAAATTGGTACAGTTTTGCCGaccgaaa
atacaaaataaatctGGTGAAAACTTGTTTTCTCGAGCTTGGAAAATCTG
CTCAAACGAAAAGATCTTTGATGCAGACTGTGACGTCATAATagacaatt
tgaaaaagaatcgCTTTCCGGAGCCTCTTTTACGTACTATCCATAAAAAC
TTTGTTGCGAAAATGAAAGTTGACTCTTCTGATTCTGTTGAGGAAACTGC
CTTAACTGTCGAgaaaaaatgtgtgaaaatgTATCTTCCATTTTTCGGAA
ATGACTGCTCAAATAAAATGaaccaatcttgagaaaagctaataattAAG
TAATCGgaaatgtgcttataaaaagagaGATCACATTTGGccctttttct
tataaaaaacacgtttagcaatcaaaatttcatgcctgaatacaactttt
ctttcattttacgaCATCATGAGCAAACAAACATTATATAACGTCAAAAA
TGGAGTAATTTGGTTTAGAACATTAATCTATGctttataaatagtgattc
ttatagataaaaatgcgttttttgagccaaaaattttgtgaaaatctgct
tcagccatacTAACCATACTTTACCCATGATAACACCCTGCTTACatgca
aaaaaatataaaaaattaatgataca

Run BLAST on NCBI

transcript from alignment at sc0000191:379384..383459-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014636 ID=TCONS_00014636|Name=TCONS_00014636|organism=Clytia hemisphaerica|type=transcript|length=4076bp|location=Sequence derived from alignment at sc0000191:379384..383459- (Clytia hemisphaerica)
TATCCATTCAACAAAATGATGTAGTTTTGAGATTTGATAATAACGTGTGA
CCTGAATTCCACACAGCACAGTATTCCTGTATTTATTGTGACGTTTGTCG
AGAGGTGTTGGCAGCTAGGATACGCCTGCCTTTTCATGAAGTGTTTTGTT
TTGTTATCGAAGAATGGCCAAGTGATTTTTCATCAAATAAACATTCTTGA
TAATTGTGACGTGTGCATGGGTCTTCATATTGGAAAATGTTCACACCATT
CCGTTAGATTCCATCGTTCAATAAGGTTTATTGATTTGAAACCCAGGTCC
GAAAATCTTTCACCCATTTTAATTCATCTTTTTGTTCTAATTTCAGCTAA
TAATCAAAAAAGAAATTATCAAGAAATTAAACATCATTAACTTGTTGAGT
TGGCACATTACAAGAATTGTTCGATAAGGATTACCGACACTCCGCCATGT
TTTTAAGCGAGGAAATTTACGGGAAACCGCTGGACATAGGAGGTGGTACA
GAGCTGATCACCGCACGGAATAACACGACATCAATCACAGGATCACAGAA
CGAAGAAAATGGTAGTAACGGCGGATTATATATCGGTGTTGTATTCTTTT
ACACGTTCGTCGCTTTCCTCGGACTTTTGAGTAACACGTTTGTATTACTG
ACCGTCTTCAAGCGATATGTATCTCGAAACACAGTCAACACTTTCTTGTG
CAGTTTAGCTACGTCAGATTTATTGATGGTGATTCTCTCAATGATGGATT
TCGCAACCTTTTTGAACGGAACCTGGGTGTTTGGTGAAGTGCTCTGCAAA
ATCCAGAGCTACATTTTAGAAATAAACTTCACAGCGTCCACTCTGACCTT
GGTTGCAGTTTCATTCGAAAGGTATTTACTGATTTGCCACCCGTACATGA
AGAGAAGGTCCATCAAATCCATCTATAAAATCATTGGTGCTGTTTGGCTC
ATCGCGTTCTTGATTTGCTCGCCCCTCTTACACGGTTACGCGGTTACAGA
AGAGATGAACAGAGAAAGTGGTGACCTGTATCTCCGTTGTCACAATACGT
GGGGTTTAAAAGGTGAATTGGCTTTCTACAGTACCTACTCTGCAATCACC
TACCTTTTCCCCTTCGTCCTCATGGCGTTCGCACATTGGAGAATCTCGCT
CTCCATCAAAGAGAACAACGACCGCCGCGCGTCCGCCTCAGCTCAAAGCA
CCTTGATCAAAGAGAAGAAATCGAGTGTGTGCTACACCATTCGCGAGGAG
CCAAGCAGTTCCACCAGCACTGAACGCACTGCTGTGGAGGAGGTGGAACC
CACGCCCGCACCACCACCACAACAAGACTCACCGCCCTCGTCCAAAGGAT
TACCGAAATCCTTTCTCCGATCAATCAGTGGACTGTCCACGCGCACACGC
TCCTCCTTCGCTGCCGACCGTGAGATATACCGACGTGAGAAACGTGTCAA
AGCTATCCGTCTCTTGTTTGTTGTCACTATCACCTTCTTCATGCTGTGGA
CGCCGTTCATCATCCTACGTTTGTTACGCGACGCTGGCGTTCACGTCAAT
AAATATCTGTACACATTCTCTGAGATAATAATTTTTAGCTCGACCGCCGT
CAATGGCTTCATTTACGCGTTCATCAGTAGGCCGTTCAGAAACGCGTTTA
AAGCTATTTTGTGTTGTCGCACACACCGTGACGCGGTTTCTAGAGACTCT
GGACCAAGTATGAGTAACTCTGAAGACAACAGACTTGCCAACCGTGGAAA
CTACTCCAGCAGAGGTTCAGTCACTTACTCATCGGACAATAAAAATGGGA
ATGCCCCAAAAATTTATTCTCAATTGAACGCAAATGGACATCACCATATG
GTGAATGACGTTTGATTACGTCATTATCTTTTGAAAAACTTTTACTACGT
TGTTTGCTGTACATATTCTTTTATTCGTAAAACCATGAACATATAAACGG
CTGGACGTCTATGTTTTATTGTCTCTTTGAAGCGAGCTTCGTTGCCGCCT
GTATTTCAAAATTGGTATGAAAAATCCGACAATACTCCGTCATAATTTTA
TTTCTTTGAATTATTTAGGTAAAAGGATTGATAGAGCTTGAACATTACTC
CTAATGTACAAAAAAATTATTTTCGAATTTTTTTACAAGTTTGCGGCTAA
TCGCCCGTGTAAGAAGCACAACTGACGTCATCAAGCTGCATTCAGTTACC
CTTGCATCTGTTTCTATCCGTTTTAACATAACATTAAACTTCGCTGGATC
GACGGATCAACGGATCAATGGATCGTTAAATCGTTCGATAGATTGACGGA
TCAGTGGCTCAACGGATCGATGGATCAAAGGATCGACGGATCAAGGATCG
ACGGATCGATGGATCAAGGATCGACGGATCGATGGATCAAGGATCGACGG
ATCGATGGATCGACGGATCAAGGATCGACGGATCGACGGATCAAGGATCG
ACGGATCGACGGATCAAGGATCGACGGATCAAGGTTCGACGGATCAATGG
ATCGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCGATGGAT
CGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCAAGGATCGA
CGGATCGACGGATCAAGGATCGACGGATCAAGGATCGACGGATCAATGGA
TCGACGGATCGATGGATCAATGGATCGATGGATCGACGGATCGATGGATC
GACGGATCAATGGATCAACGGATCAACGGATCAAGGATCGACGGATCAAT
GGATCAATGGATCGACGGATCGATGGATCGTTGGATCGACGGATCAACGG
ATCGATGGATCAATGGATCAATGGATCGATGGATCGACGGATCAATGGAT
CGATGGATCAATGGATCGATGAACCGACGAATCGATGGATCAATGGATCA
ATGGATCGACGGATCATTGGATCAATGGATAGATGGATCGAATAAGGAAC
TCGTGTAGCTTATGTAACATATGGCATGAAATAATAAAAAAATAAGCATG
AAAAATACTTTTAAAAGGTATATAACACTCAATGGTTTGGAACAAATGTC
AAATTTTGGGAAAATGGTGATGTCATTTTAACACCTTCCATCGTGTTTTA
CACACATTGAGTTCAGTACATTTTCAGACATTTTCGTAAGCAAAAAAGTT
GTTGAGTGTAAAAAATCCTTTCCAACGGTATATAATGGTATTTAATATGC
CTAAACCATTATTTTATCGACGATATGTTTCCTGATCTTTAAACGACCTT
CAGAAATGCATGTTTTTTTATGACTATCTAAATGGATTACATGCAAACAT
CAAATTTACCATCGAGGAGGAGACTAACGGTATGCTACCACTTTTGGACG
CTAAAGTGACCAAGGCTGATGGTAAATTCCTAACGAATACGTATTATAAG
CCTACTCGCCATGGGCTGTACACAAATTGGTACAGTTTTGCCGACCGAAA
ATACAAAATAAATCTGGTGAAAACTTGTTTTCTCGAGCTTGGAAAATCTG
CTCAAACGAAAAGATCTTTGATGCAGACTGTGACGTCATAATAGACAATT
TGAAAAAGAATCGCTTTCCGGAGCCTCTTTTACGTACTATCCATAAAAAC
TTTGTTGCGAAAATGAAAGTTGACTCTTCTGATTCTGTTGAGGAAACTGC
CTTAACTGTCGAGAAAAAATGTGTGAAAATGTATCTTCCATTTTTCGGAA
ATGACTGCTCAAATAAAATGAACCAATCTTGAGAAAAGCTAATAATTAAG
TAATCGGAAATGTGCTTATAAAAAGAGAGATCACATTTGGCCCTTTTTCT
TATAAAAAACACGTTTAGCAATCAAAATTTCATGCCTGAATACAACTTTT
CTTTCATTTTACGACATCATGAGCAAACAAACATTATATAACGTCAAAAA
TGGAGTAATTTGGTTTAGAACATTAATCTATGCTTTATAAATAGTGATTC
TTATAGATAAAAATGCGTTTTTTGAGCCAAAAATTTTGTGAAAATCTGCT
TCAGCCATACTAACCATACTTTACCCATGATAACACCCTGCTTACATGCA
AAAAAATATAAAAAATTAATGATACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008189	XLOC_008189	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00014636-exon-sc0000191-1575043694:379384..383459	TCONS_00014636-exon-sc0000191-1575043694:379384..383459	Clytia hemisphaerica	exon
TCONS_00014636-exon-sc0000191-1510915933:379384..383459	TCONS_00014636-exon-sc0000191-1510915933:379384..383459	Clytia hemisphaerica	exon
TCONS_00014636-exon-sc0000191-1491911889:379384..383459	TCONS_00014636-exon-sc0000191-1491911889:379384..383459	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000191	supercontig	sc0000191:379384..383459 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527599	0.54686	0.624962	0.52406	2.9673	2.82488	5.10377	5.19319	2.93414	2.40123	2.26574	2.08671	3.65483	2.39871	1.34267	1.855	1.42937	1.32043	1.38032	1.46955	2.25992	1.87593	1.34744	1.64135	3.3957	5.26808	2.6768	2.06799	1.06086	1.22321

Blast

[Close]

BLAST of TCONS_00014636 vs. Swiss-Prot (Human)
Match: NPY5R (Neuropeptide Y receptor type 5 OS=Homo sapiens GN=NPY5R PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.762e-18
Identity = 64/220 (29.09%), Postives = 106/220 (48.18%), Query Frame = 3

Query:  597 FYTFVAFLGLLSNTFVLLTVFKRYVSRNTVNTFLCSLATSDLLMVIL-SMMDFATFLNGTWVFGEVLCKIQSYILEINFTASTLTLVAVSFERYLLICHPYMXXXXXXXXXXXXGAVWLIAFLICSPLLHGYAVTEEMNRESGDLYLR----CHNTWGLKG-ELAFYSTYSAITYLFPFVLMAFAHWRISLSI-----KENNDRRASASAQSTLIKEKKS 1223
             YTFV+ LG + N  +L+ + K+   + TVN  + +LA SD+L+V+  S     + L   W+FG+V+C I  ++  ++   STL L++++  RY +I HP     +    Y +I  VW + F ICSPL   +++  E+    G   L     C  +W      +AF  +   + Y+ P V +  +H  +  SI      + N    +     TL   KKS
Sbjct:   47 LYTFVSLLGFMGNLLILMALMKKRNQKTTVNFLIGNLAFSDILVVLFCSPFTLTSVLLDQWMFGKVMCHIMPFLQCVSVLVSTLILISIAIVRYHMIKHPISNNLTANHGYFLIATVWTLGFAICSPLPVFHSLV-ELQETFGSALLSSRYLCVESWPSDSYRIAFTISLLLVQYILPLVCLTVSHTSVCRSISCGLSNKENRLEENEMINLTLHPSKKS 265

The following BLAST results are available for this feature:

BLAST of TCONS_00014636 vs. Swiss-Prot (Human)

BLAST of TCONS_00014636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPY5R	3.762e-18	29.09	Neuropeptide Y receptor type 5 OS=Homo sapiens GN=...	[more]

You are here

TCONS_00014636 (transcript) - C. hemisphaerica