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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014602 ID=TCONS_00014602|Name=TCONS_00014602|organism=Clytia hemisphaerica|type=transcript|length=2556bp
GCTCATGAAACAAAAGCTGTAATAGGAATCATGCTTTCATGTGTCAAAAC
CAAGATCTGCTTGATGATTGGTTGGTTTTGTTTTCTGTCGTAATATTCAA
AATGGCGTCGTCGTGCCGCTTGCGTAAGCAGAGAAAATCTGAAGCAGTGG
GCTGACATTCGACGTGCCATGAAGAAGAATAAGAAGGAGGACATTATGGA
GATATTATGACATATCATGCTACCTGCATTCAGCAAGGAGTATACCATAT
TTTAAGCAAAGAGATGAGTTGTAAGATACCAGtcattttgtagttttttt
tgCCTCAGGAAAATGGTTGAATTCGTTGTATCGGAGTGTCCAACAGTACC
GCTGACAAAAACTCAACACGGACATGCTGTAATTAGTAAAGACACTTTAG
ATATCAAAACAAGGCAAGATCCAGCGATTTTACCTCTAAAGTCATGCATC
CAAATACCAAATCCTGATGGAAGTGGAGAAAAGCTTAATATAAAGAAGGC
GAAAAGTGTACATTTTGCTGATAGCTTGGGTAAACCTTTAAAGTCGGTTA
AGACCTTATGTGATCTTGAGGATGATCTGGATTTACTTTTCCTTGGTTTG
AAAACAAACTACAGTTCTACCCGAAGAAGTTTTCCTGTAAGAGATAAGAA
AACATCCCAGAAGTTTGACTTTGTCAATTTTAAACCACCAATTACTGAAC
CAAACTTTCTAGAGCGTGTTcaaaaggaaaatgttttattggaaAACATC
TTTGTTAAAGACAACAAAGTTCTTGGCACTGTGaatgtgaaaaatatttc
cttcgaGAAAGATGTATCAATCACTTATACATTAAATGACTGGGAAACTG
TGCAAAATGCCAGAGGAAAATATGTTCCCGGATCCAGCACTGGGACGATT
GAtatcttttcttttgaaattacCTTTCCTGAAGACACTGCTTGCAATAT
CAAATTCGCAATTTGTTACAAAGCAgccaaaaaagaattttgggaTTCTa
atgaatctaaaaattatatCTTGGCAATCAAAACCAAATCTCCAAAGAAG
AAACTAATAGATGATTCTGACAATTTTAATGGGTTTATTATTTCCAAACA
AAACTTTATTGGCTGGGCATCATAACACAATGAAATGATTAGGTGACATT
AAAACTGATATAATCACAATGTTTGTCTTTAATTTGATCTTATTTAGGTA
ATGGACATAAGTTTTATCCTTTTTGGATACAGTAGATAATAAAAAGACTT
GATTTtataaatctgaaaaaaagaagtagcaggccatttttcatgccctt
taagcatccggttatcggacgctgcccctcttgaaattacttaaatattg
gtaaaaacagcctttttagtagaaaaacactggaaaaagtgCGTTTTGTT
CTGTCCAAAGACCACTTTAAATGTATTCAGAATTTATGTTATTGTTATAT
TGTTATGTGGTATctttcaagatttttcgatAATTTGTTATAGTGAAGTC
TGTTAGCACATAAAAatgtaagaatacttcagatggtgataaaagcatga
aaattGGCACCGATGATCcttagattttaattttaaacagtaacaccaaa
ttctGCCACCTGGCTACCTGCCAGATGACATCATCAGGTGGCtcggcaaa
aaattatttttttgaaaatattcaacatCTGATGGTTCCAGCAGAAacag
catgaaatgctgatgaaaattgaggtataaaacataccttgaaaatcttc
ctatcaaaagttatgaaggttttgaaagttttgtgatgacctCATCAAAA
GCCTTTTTAGGCAAAACTTAAACACCTcctatttttttaacaaattcacc
aaatttgatttgatttgatgtaTTTAGTATTCTTGTCCTaactaacagac
ctcactattaGTATGCACAGAAATATGATACCATGTTTTTGTTAccaatt
tttaatttgttttttttttctttatattttgacTGGAAATGTATGacatt
aatttttttccaattatCCACTTGATTAGTTTTGTATTACaatctttttt
aattatttcattttgacaATTATTTCAATTTGACAATTATTTCATTTGAC
CGATTAATCAGTTTTTTTCCAGAAATTTATACTCGAAAACTTcttaaaaa
aagatatatttattgaatttttttagacttttttattttagtatcaTCAA
CGAATTATTTCATATCATAGTATTTAGATAATTATAAGGTTTGTGCACAT
AGTATATGATATGGTTCTTATAGGAGTGAGaagatttttgttttagaaaa
taaCATATTTCATATTACAATCATAAGTTATATCCACCTTGTATTGTTTA
CCACAATAGACCTGTCTTCTTTTTGGAATTGATTTGTTATGTTGTTTGCT
TTAGATAGTTTGAATGTGCATTATTGCATATTTTCACTCGAAACTGAATG
CTGCTTTTATTGtttgacttttaaaaaataGTATCAAATTACCTTTTTCT
GTATTTGCCACTTCTTGTATCCTGTAATCCTAGTATGCactcttattttc
tttttt Run BLAST on NCBI transcript from alignment at sc0000190:274764..279386- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014602 ID=TCONS_00014602|Name=TCONS_00014602|organism=Clytia hemisphaerica|type=transcript|length=4623bp|location=Sequence derived from alignment at sc0000190:274764..279386- (Clytia hemisphaerica)
GCTCATGAAACAAAAGCTGTAATAGGTAAGTACTTACAAAGATTCAATAA
CCTTTTTAAAAAAAAGTGCTGGTGTAGTTCATTCACTCGGTATAATGCGC
CATGCGCTCCCGCTAAAATCTTTCACGGCTTTATCTACCATTTTGGATTA
TAGATTACTTTTGTTTTCGGAATTTCCGAGGTAACGGGGTGCGAGGGTGC
GAGGGGGTGCGACCAATGAAGTATAAGCCCGAAGGGCTAGTAGTCAATCT
CTTTGGTAGGATTTGAAGCCAACAAATCCTATCAAAGTTGCGCGGCCTTG
AACGACCCGCCTGGTTTTTACACAAATGACAGATTGAAACTAAAATTTAC
CGCTTAATTTCGAAAAATATATCACTCGAAAACAAAGGAATTGCTATATT
CAATCCGTCATCAAAAATACGGCGCATATTTTAAGCTTAAGGCTTCAATT
TTTCTTGCCTGAGAAAGGTTAGAGATTGACCTCTAGCCCTTCGGGCTTGA
AACTCAATGGGTGCGACACGACAGGAGAGGCAAAGGAGGGGTAAATAAAC
TATCTGTGTCCCTCACAGTCCCCGGGGGGGGGGCACTCGATCTGAAAACG
ACCATCCGTTCGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGCGTAC
GGTATTTCGGAATTGCGGAAATTGACCCTTTTTTCTTCGGAATTTCGGAA
ATCGGGCAAAATTCCTTCGTTCGGTATTTCGGAATTCTGAAATTGTTTCG
GTATCGGAAATCCATGACATTTTGCTTCGAAATTTCGGTATTATAAATTT
TTTATCCCCCTTTTTCGGTATTCATGCATGAAAAATCAAATTTGATGAAA
AATTAGTCAAAACGAGGAAAAATACCCAAAAAATCGATATCGGAATTGTA
AGTATTATTTTACGGAATTTCGGAAATTTTGGCAAAATTATTCGGTATTT
CGGAAATTGCATACCCCGTACGCCCCCCCCCCCTGAAAATGCATGAATTT
CCAAGGTAATTGAATTAAAAAAGACAAAAAAGAGTGGAATTTCCGATGCA
TTTTGCAAAAGTACATGGATTTTTATCGGAATTTCCGACCACTACTGGAA
AAGAAAAATTATTTCCGAGGCTAGAAAAAATTAAAAAATGCACGTCGTCC
GCCGACGGGGGGTAACAAAAATTTTCTGGAATGGCCCATACGTTCGGCCC
AAAATTTGGCTTCCAACACCCTTACAGTGCAGTGAATTTCCTTGAAAAAT
CATACCCTTACAGTGCATTTTTTCAAAATTTGTCGCCTGTAAGGGCGACA
ATTTTTGCACAAGAAAGTGTGGAATTTTTCCTCCAAAATTGATCAATTTT
GTGCCAATTTTACCAAAAAATTGGCCTTTTATCACGATTTCCTACCCTTA
CAGTGCAGTTCAGTGCACAGTTTTTGTAATTTCCTACCCTTACAGTGCAC
TAGCTGAACTATGAAAAACCTACCCTTAAGGGCCGAACGTCTGGTAAGTC
ATTTACCTTGAGTGCCCCCCCCCCCCGGGCCCACAGTGTCCTGGGAAAAA
AGAGGGGGTACTTAAAGAACAAGGGCAGTAGAAAAGTCTAAATATATAAT
AGAGATATTAGAGATGATGTTGTTCGAAGAAGACACTTTTGTTGATAAAG
TGTCGAAATATATCAGTTTTTAATTATCCTTTTTGGCCATCGAAGTTTTA
TGCAATGTTCTTATTTAGTTCTTATGAAAAAACGTGTACTTTCATCACAT
TTATTTACCGCCATGCTAAATTTGAGATTACCCATTTCTATTATATGGCT
ATTATCATGCTTCCCGTTCGAAATTGACCCTTGACCCCCATGGGTTTTCA
AAGTCTATCATTGTTCGCAATTAACTTTTTGATCACGTTTAGGAATCATG
CTTTCATGTGTCAAAACCAAGATCTGCTTGATGATTGGTTGGTTTTGTTT
TCTGTCGTAATATTCAAAATGGCGTCGTCGTGCCGCTTGCGTAAGCAGAG
AAAATCTGAAGCAGTGGGCTGACATTCGACGTGCCATGAAGAAGAATAAG
AAGGAGGACATTATGGAGATATTATGACATATCATGCTACCTGCATTCAG
CAAGGAGTATACCATATTTTAAGCAAAGAGATGAGTTGTAAGATACCAGT
CATTTTGTAGTTTTTTTTGCCTCAGGAAAATGGTTGAATTCGTTGTATCG
GAGTGTCCAACAGTACCGCTGACAAAAACTCAACACGGACATGCTGTAAT
TAGTAAAGACACTTTAGATATCAAAACAAGGCAAGATCCAGCGATTTTAC
CTCTAAAGTCATGCATCCAAATACCAAATCCTGATGGAAGTGGAGAAAAG
CTTAATATAAAGAAGGCGAAAAGTGTACATTTTGCTGATAGCTTGGGTAA
ACCTTTAAAGTCGGTTAAGACCTTATGTGATCTTGAGGATGATCTGGATT
TACTTTTCCTTGGTTTGAAAACAAACTACAGTTCTACCCGAAGAAGTTTT
CCTGTAAGAGATAAGAAAACATCCCAGAAGTTTGACTTTGTCAATTTTAA
ACCACCAATTACTGAACCAAACTTTCTAGAGCGTGTTCAAAAGGAAAATG
TTTTATTGGAAAACATCTTTGTTAAAGACAACAAAGTTCTTGGCACTGTG
AATGTGAAAAATATTTCCTTCGAGAAAGATGTATCAATCACTTATACATT
AAATGACTGGGAAACTGTGCAAAATGCCAGAGGAAAATATGTTCCCGGAT
CCAGCACTGGGACGATTGATATCTTTTCTTTTGAAATTACCTTTCCTGAA
GACACTGCTTGCAATATCAAATTCGCAATTTGTTACAAAGCAGCCAAAAA
AGAATTTTGGGATTCTAATGAATCTAAAAATTATATCTTGGCAATCAAAA
CCAAATCTCCAAAGAAGAAACTAATAGATGATTCTGACAATTTTAATGGG
TTTATTATTTCCAAACAAAACTTTATTGGCTGGGCATCATAACACAATGA
AATGATTAGGTGACATTAAAACTGATATAATCACAATGTTTGTCTTTAAT
TTGATCTTATTTAGGTAATGGACATAAGTTTTATCCTTTTTGGATACAGT
AGATAATAAAAAGACTTGATTTTATAAATCTGAAAAAAAGAAGTAGCAGG
CCATTTTTCATGCCCTTTAAGCATCCGGTTATCGGACGCTGCCCCTCTTG
AAATTACTTAAATATTGGTAAAAACAGCCTTTTTAGTAGAAAAACACTGG
AAAAAGTGCGTTTTGTTCTGTCCAAAGACCACTTTAAATGTATTCAGAAT
TTATGTTATTGTTATATTGTTATGTGGTATCTTTCAAGATTTTTCGATAA
TTTGTTATAGTGAAGTCTGTTAGCACATAAAAATGTAAGAATACTTCAGA
TGGTGATAAAAGCATGAAAATTGGCACCGATGATCCTTAGATTTTAATTT
TAAACAGTAACACCAAATTCTGCCACCTGGCTACCTGCCAGATGACATCA
TCAGGTGGCTCGGCAAAAAATTATTTTTTTGAAAATATTCAACATCTGAT
GGTTCCAGCAGAAACAGCATGAAATGCTGATGAAAATTGAGGTATAAAAC
ATACCTTGAAAATCTTCCTATCAAAAGTTATGAAGGTTTTGAAAGTTTTG
TGATGACCTCATCAAAAGCCTTTTTAGGCAAAACTTAAACACCTCCTATT
TTTTTAACAAATTCACCAAATTTGATTTGATTTGATGTATTTAGTATTCT
TGTCCTAACTAACAGACCTCACTATTAGTATGCACAGAAATATGATACCA
TGTTTTTGTTACCAATTTTTAATTTGTTTTTTTTTTCTTTATATTTTGAC
TGGAAATGTATGACATTAATTTTTTTCCAATTATCCACTTGATTAGTTTT
GTATTACAATCTTTTTTAATTATTTCATTTTGACAATTATTTCAATTTGA
CAATTATTTCATTTGACCGATTAATCAGTTTTTTTCCAGAAATTTATACT
CGAAAACTTCTTAAAAAAAGATATATTTATTGAATTTTTTTAGACTTTTT
TATTTTAGTATCATCAACGAATTATTTCATATCATAGTATTTAGATAATT
ATAAGGTTTGTGCACATAGTATATGATATGGTTCTTATAGGAGTGAGAAG
ATTTTTGTTTTAGAAAATAACATATTTCATATTACAATCATAAGTTATAT
CCACCTTGTATTGTTTACCACAATAGACCTGTCTTCTTTTTGGAATTGAT
TTGTTATGTTGTTTGCTTTAGATAGTTTGAATGTGCATTATTGCATATTT
TCACTCGAAACTGAATGCTGCTTTTATTGTTTGACTTTTAAAAAATAGTA
TCAAATTACCTTTTTCTGTATTTGCCACTTCTTGTATCCTGTAATCCTAG
TATGCACTCTTATTTTCTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014602-exon-sc0000190-1575043694:279362..279386 | TCONS_00014602-exon-sc0000190-1575043694:279362..279386 | Clytia hemisphaerica | exon |
| TCONS_00014602-exon-sc0000190-1575043694:274764..277294 | TCONS_00014602-exon-sc0000190-1575043694:274764..277294 | Clytia hemisphaerica | exon |
| TCONS_00014602-exon-sc0000190-1510915933:279362..279386 | TCONS_00014602-exon-sc0000190-1510915933:279362..279386 | Clytia hemisphaerica | exon |
| TCONS_00014602-exon-sc0000190-1510915933:274764..277294 | TCONS_00014602-exon-sc0000190-1510915933:274764..277294 | Clytia hemisphaerica | exon |
| TCONS_00014602-exon-sc0000190-1491911889:279362..279386 | TCONS_00014602-exon-sc0000190-1491911889:279362..279386 | Clytia hemisphaerica | exon |
| TCONS_00014602-exon-sc0000190-1491911889:274764..277294 | TCONS_00014602-exon-sc0000190-1491911889:274764..277294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:274764..279386 - |
Blast
BLAST of TCONS_00014602 vs. Swiss-Prot (Human)
Match: PPR3D (Protein phosphatase 1 regulatory subunit 3D OS=Homo sapiens GN=PPP1R3D PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.478e-21 Identity = 63/220 (28.64%), Postives = 103/220 (46.82%), Query Frame = 1
Query: 412 RQDPAILPLKSCIQIPNPDGSGEKLNIKKAKSVHFADSLGKPLKSVKTXXXXXXXXXXXXXXXKTNYSSTRRSFPVRDKKTSQKFDFV------NFKPPITEPNFLERVQKENVLLENIFVKDNKVLGTVNVKNISFEKDVSITYTLNDWETVQNARGKY-VPGSSTGTIDIFSFEITFPE---DTACNIKFAICYKAAKKEFWDSNESKNYILAIKTKS 1041
RQ A P +C G +KL ++ FAD+LG L VK +D L + + +S +SQ +F +F PP+ +F ER+Q++ V LE + D + GTV V N++FEK V++ YT + W + A ++ P GT D+F+F P + + FA+ Y+ A E+WD+N+ ++Y L + +
Sbjct: 82 RQKAAGAPGAACRP-----GCSQKLRVR------FADALGLELAQVKVFNAGDDPSVPLHVLSRLAINSDLCC-------SSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHA 283
The following BLAST results are available for this feature:
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