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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014601 ID=TCONS_00014601|Name=TCONS_00014601|organism=Clytia hemisphaerica|type=transcript|length=1268bp
tgaaaaattcaaattaaaaacgATGCCGAAAGCTGCAAGAGGGAAAAGTG
GCACAACATCTGAGGCTTGTAATTGGGAAGCTGAATTGGCACAAGCTGTT
TTTCAAGAGCCTGATTGGCGACCATTAGTGTATTTTCTTGGTCCACAGCA
ATATTCAGATGTGGCTGTTGTCAACTTGTTGAGTGATACCATCAAAACTG
GTGTCAGAAAACTCTTCAATGTTGTTGATTATTACAAATTGTTGGTGGAG
GCAAAAGAGATTGCTACCCAAACAAAAGGGAGTAAGGGCAAAGGCGTTCC
AGGAACCAAACCACAGTATTCAGAGATTTGTGAGCAAGTCAAATTATTGT
TGGATCAAGGCGAAAAGATACCTGTCAACACACTTGCCAAGCTTATCAAA
TTCAAGTTGTTATCCATTAAAGCCAGTGACATTGAAAGAAGAAATGCTGA
AAAGAAGTTAACTTCTACAACTATATCAAAACCAAAGCTTGACCAAAGTG
CATCAAAGACTGTCAGTCCAAATAGAGCGCGATCAGCAGGTTCTCCAGGA
AAAGGAGGCAAGAAAGGCGCAAAGAAAGAACCAGAAAAACCGTTGTCACC
CAAAAAAGAGACCAAATTAAAGAAACGTGGCGAAGAAAGTGAAGTGATTG
AATACATTGGTAAGTGGAATTCTTTAGATAAAGTGGTTATTCGGTATAAA
AGGTTAATCTGAAAGATTTTTTAGCTTCTTGATCTATAGCTTGAGCTCAA
GTCTTAAGTGGGGTGGTTTATGTGGAATTAACAGTTTATTAACAAAAATG
TAACCCAATAAATGAAACATCTAGTGGCAGACAACACTATTGTTCTAGTT
TTTTCTTCTAAAGGCGTGAATAACACTCAAACAACCCTTTANAACCCAAT
AAATGAAACATCTAGTGGCAGACAACACTATTGTTCTAGTTTTTTCTTCT
AAAGGCGTGAATGACACTCAAACAACCCTTTATCTTATTGGAACTTTTTC
TCTTATTTAAAGGCTTCTGAACTCTATAAAAAACTATATGAACTTTCTAG
ATGAAGAACCTGTCCTGAACTCTTTAAACTCTCTAGATGACAAACTTGAA
CTCTATGAATTTTCTAGATGACAAACCTAAACTCTATATAAATTCTCTAG
ATGACAAACCTGAACTCTATATAAATTCTCTAGATGACAAACTTGAACTC
TATATAAATTCTCTAGATGATAAACTTGAACTCTTTATAAATTCTCTAGA
TGACAAACCTGAACTCTA Run BLAST on NCBI protein sequence of TCONS_00014601-protein >TCONS_00014601-protein ID=TCONS_00014601-protein|Name=TCONS_00014601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
EKFKLKTMPKAARGKSGTTSEACNWEAELAQAVFQEPDWRPLVYFLGPQQ
YSDVAVVNLLSDTIKTGVRKLFNVVDYYKLLVEAKEIATQTKGSKGKGVP
GTKPQYSEICEQVKLLLDQGEKIPVNTLAKLIKFKLLSIKASDIERRNAE
KKLTSTTISKPKLDQSASKTVSPNRARSAGSPGKGGKKGAKKEPEKPLSP
KKETKLKKRGEESEVIEYIGKWNSLDKVVIRYKRLI Run BLAST on NCBI transcript from alignment at sc0000190:236362..240274- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014601 ID=TCONS_00014601|Name=TCONS_00014601|organism=Clytia hemisphaerica|type=transcript|length=3913bp|location=Sequence derived from alignment at sc0000190:236362..240274- (Clytia hemisphaerica)
TGAAAAATTCAAATTAAAAACGATGCCGAAAGCTGCAAGAGGGAAAAGTG
GCACAACATCTGAGGCTTGTAATTGGGAAGCTGAATTGGCACAAGCTGTT
TTTCAAGAGGTAAGTTTGGTTTTATGATTTTTTACACAACCTCAGCCCTG
TGAATTCAGACAAAATCATATCGACACTTAAGTGCCGACCAAAACCGGCA
CACAAAATTTTGCCGACCTAGAGGTCATTTTAGGTCGGCAAAGCCGTCCT
AAGTAGCTTGTTTAGGTCGGCAAAGACAATAAATTTCCTACAGTTAGTTT
AACTATCCTTAACAATCATCAATTAATAAGATGGAGGAAGTCAAAAGGCT
CGATTATCATGTGTTATCAAATGATAACACAATTAGACTAACCTAACAAA
TAATATTTTTCCTCTTTATCTCGGCTTTGCCGACCCAAAATATTTCTTTT
GTCGGCACGCCGACCTAGAGTGTAAATTACGTCGGCAAATAACAGCCGAC
TTCAGCTCAAGTTACGTCGGCTTTCAGGTCTGGATTCACAGGGCTGCAAC
CTAAAATAGCACGCATGTTTAGTGAGATGTGAAGTGTAAGTAAAAAATAG
ACTTGTCCAAAACACATTTGTATGTGTAATGCACCTGCTATTAAGGATAA
AAAAAGTTATATAATCACATAATTTTATTTCAGATCAGCATTAATACCTT
GAAGTATATTTTTAACATTTTCTTTTTATGGTCATTGTAAATTGTTGAGC
CTTTAAAGAAATCTGGCATGATTGAAGTCACACTATTGGTCTCCAGTCAG
GGGGGGGGCAAGCAGTTAGTACAGAACACTATGTGTACTAACTGATTTTT
GGAAAAATCTGTACCCCACCACCACCCCATGTCACTTAGTACACCGTGTA
CTAACTGTCTTTGACCTTGCTCAATATATATACCACCCCCCTAAATAAGG
ATCCGTCTCTCTACGGTGCATTCCAGGTGAATTTCACACCCCAGGGAGGT
TTTATGAGGTGTATTTTTACGTTTTTACCTGTCTTTACCAGGTTTTTACC
ACTAACTACTTTCAAACAAATAAAAATATAACAAATTATGGAGTAGGTCA
ACCGCAGTGGGGGGAAGAATTGATGAATAATTTTTTTTTCAAAATGAATA
TTTACCAGTTAGTCAATGAAAACACTAGTAAACCTAGTTAAAGTGACAAT
AATGACTTTCCAGAAACACTTTTTAGACAGAAAACACAAAACACAAAACA
GAAAACGTTCGAAAGTTCGAAATTTTCAAATTCGAATGTTTTATTTTGAA
TATTTCTAAGAGTTCTAAGAGTTCCTAGAATTGTAATGTCATGTGTCAAG
CTGTTAAAAGGTATTCCTGACTGTCCTAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACACTGGTGTACTAACTGCATTTTGAAAATTTGAAAAAT
GGACCCACCACGGTACTAAGTGTCATGGGTGTCGTGTACTAACTGCTTGC
CCCCCCCTGCTCCAGTACTCCTAGCCATACAAACTTTTGCCCCGAAACCA
AAGTTGAAAAGATAAAGATTTATAAAGTTTATAATTGTGTCACTTCACTA
AGTTATGAGAAGGGATGTGTAGGTGTAATTTGACTGACTAACTTTGGCTA
TACAGACTTGTAATTTAATTTTTTCATTTATTTCCTCTATAATAATCCTA
AAATTTCTTTTCTTCAGCCTGATTGGCGACCATTAGTGTATTTTCTTGGT
CCACAGCAATATTCAGATGTGGCTGTTGTCAACTTGTTGAGTGATACCAT
CAAAACTGGTGTCAGAAAACTCTTCAATGTTGTTGATTATTACAAATTGT
TGGTGGAGGTAAGTCCTTATTTTCAATATTCGTTCTGTTTAAAAAAAAGG
TTATCAGAACTGGCCTGAACTGAACCGACCTTTGAGTTAAGTTTTTACTA
ACAGTTGTATTATGTATATCATGTAATTATTGCATGAATATAAATAAATA
AGCTCTTTTAGGTTTAACTTTGGACAAAAAATACCTTTAACTCCATACTC
ACTTCTTAGCTTTTAACATTTTTTTAATATAGGCAAAAGAGATTGCTACC
CAAACAAAAGGGAGTAAGGGCAAAGGCGTTCCAGGAACCAAACCACAGTA
TTCAGAGATTTGTGAGCAAGTCAAATTATTGTTGGATCAAGGCGAAAAGA
TACCTGTCAACACACTTGCCAAGCTTATCAAATTCAAGTTGTTATCCATT
AAAGCCAGTGACATTGAAAGAAGAAATGCTGAAAAGAAGTTAAGTAATAT
AATGTTGAACGGTGAAGAAGAATGCGGCTATTATATTTTTATTTTCCCCA
ATATTCCTAATACTCATAAAAATTTGCAATAAATATTTTACTAGTCTGAA
TAAAAATGAGTCAAATACCTTAAGGAAGAAATCTTCTTCTTAAATTCTGC
GAAACACAAATATTCTCAGGATTAAAAAAATCACCTCTAAAATTGGGTTT
TTAATGGCAAAATAGGCCATATATTTTAATCAAAAAATTCTCAACCACGA
AAATTAAATTCCACGAAACTTCAGAATTTTAAGCTTTGAACTGCGAAATC
AAATTTCTTCCCTTGGTAAACATACTCAAAGTTTCATGCCATACAGAATT
AAAAGTTTATCTTCATCAGCTCTTGTACTACCAGTCCATAGTTAAAAAAG
TAGGGACTTCGTTATTCTGGTAGATAATATCCTATGCTGTCGTGTTGATT
CGTCGTCCGATTTAGTTTCTCAAAAAATTATGTATATGTATTCATTTTTC
AGTTAGCTTCTACAACTATATCAAAACCAAAGCTTGACCAAAGTGCATCA
AAGACTGTCAGTCCAAATAGAGCGCGATCAGCAGGTTCTCCAGGAAAAGG
AGGCAAGAAAGGCGCAAAGAAAGAACCAGAAAAACCGTTGTCACCCAAAA
AAGAGACCAAATTAAAGAAACGTGGCGAAGAAAGTGAAGTGATTGAATAC
ATTGGTAAGTGGAATTCTTTAGATAAAGTGGTTATTCGGTATAAAAGGTT
AATCTGAAAGATTTTTTAGCTTCTTGATCTATAGCTTGAGCTCAAGTCTT
AAGTGGGGTGGTTTATGTGGAATTAACAGTTTATTAACAAAAATGTAACC
CAATAAATGAAACATCTAGTGGCAGACAACACTATTGTTCTAGTTTTTTC
TTCTAAAGGCGTGAATAACACTCAAACAACCCTTTANAACCCAATAAATG
AAACATCTAGTGGCAGACAACACTATTGTTCTAGTTTTTTCTTCTAAAGG
CGTGAATGACACTCAAACAACCCTTTATCTTATTGGAACTTTTTCTCTTA
TTTAAAGGCTTCTGAACTCTATAAAAAACTATATGAACTTTCTAGATGAA
GAACCTGTCCTGAACTCTTTAAACTCTCTAGATGACAAACTTGAACTCTA
TGAATTTTCTAGATGACAAACCTAAACTCTATATAAATTCTCTAGATGAC
AAACCTGAACTCTATATAAATTCTCTAGATGACAAACTTGAACTCTATAT
AAATTCTCTAGATGATAAACTTGAACTCTTTATAAATTCTCTAGATGACA
AACCTGAACTCTA Coding sequence (CDS) from alignment at sc0000190:236362..240274- >TCONS_00014601 ID=TCONS_00014601|Name=TCONS_00014601|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000190:236362..240274- (Clytia hemisphaerica)
CTTCTACAACTATATCAAAACCAAAGCTTGACCAAAGTGCATCAAAGACT
GTCAGTCCAAATAGAGCGCGATCAGCAGGTTCTCCAGGAAAAGGAGGCAA
GAAAGGCGCAAAGAAAGAACCAGAAAAACCGTTGTCACCCAAAAAAGAGA
CCAAATTAAAGAAACGTGGCGAAGAAAGTGAAGTGATTGAATACATTGGT
AAGTGGAATTCTTTAGATAAAGTGGTTATTCGGTATAAAAGGTTAATCTG
AGCAAAAGAGATTGCTACCCAAACAAAAGGGAGTAAGGGCAAAGGCGTTC
CAGGAACCAAACCACAGTATTCAGAGATTTGTGAGCAAGTCAAATTATTG
TTGGATCAAGGCGAAAAGATACCTGTCAACACACTTGCCAAGCTTATCAA
ATTCAAGTTGTTATCCATTAAAGCCAGTGACATTGAAAGAAGAAATGCTG
AAAAGAAGTTAACCTGATTGGCGACCATTAGTGTATTTTCTTGGTCCACA
GCAATATTCAGATGTGGCTGTTGTCAACTTGTTGAGTGATACCATCAAAA
CTGGTGTCAGAAAACTCTTCAATGTTGTTGATTATTACAAATTGTTGGTG
GAGGAAAAATTCAAATTAAAAACGATGCCGAAAGCTGCAAGAGGGAAAAG
TGGCACAACATCTGAGGCTTGTAATTGGGAAGCTGAATTGGCACAAGCTG
TTTTTCAAGAGCTTCTACAACTATATCAAAACCAAAGCTTGACCAAAGTG
CATCAAAGACTGTCAGTCCAAATAGAGCGCGATCAGCAGGTTCTCCAGGA
AAAGGAGGCAAGAAAGGCGCAAAGAAAGAACCAGAAAAACCGTTGTCACC
CAAAAAAGAGACCAAATTAAAGAAACGTGGCGAAGAAAGTGAAGTGATTG
AATACATTGGTAAGTGGAATTCTTTAGATAAAGTGGTTATTCGGTATAAA
AGGTTAATCTGAGCAAAAGAGATTGCTACCCAAACAAAAGGGAGTAAGGG
CAAAGGCGTTCCAGGAACCAAACCACAGTATTCAGAGATTTGTGAGCAAG
TCAAATTATTGTTGGATCAAGGCGAAAAGATACCTGTCAACACACTTGCC
AAGCTTATCAAATTCAAGTTGTTATCCATTAAAGCCAGTGACATTGAAAG
AAGAAATGCTGAAAAGAAGTTAACCTGATTGGCGACCATTAGTGTATTTT
CTTGGTCCACAGCAATATTCAGATGTGGCTGTTGTCAACTTGTTGAGTGA
TACCATCAAAACTGGTGTCAGAAAACTCTTCAATGTTGTTGATTATTACA
AATTGTTGGTGGAGGAAAAATTCAAATTAAAAACGATGCCGAAAGCTGCA
AGAGGGAAAAGTGGCACAACATCTGAGGCTTGTAATTGGGAAGCTGAATT
GGCACAAGCTGTTTTTCAAGAGCTTCTACAACTATATCAAAACCAAAGCT
TGACCAAAGTGCATCAAAGACTGTCAGTCCAAATAGAGCGCGATCAGCAG
GTTCTCCAGGAAAAGGAGGCAAGAAAGGCGCAAAGAAAGAACCAGAAAAA
CCGTTGTCACCCAAAAAAGAGACCAAATTAAAGAAACGTGGCGAAGAAAG
TGAAGTGATTGAATACATTGGTAAGTGGAATTCTTTAGATAAAGTGGTTA
TTCGGTATAAAAGGTTAATCTGAGCAAAAGAGATTGCTACCCAAACAAAA
GGGAGTAAGGGCAAAGGCGTTCCAGGAACCAAACCACAGTATTCAGAGAT
TTGTGAGCAAGTCAAATTATTGTTGGATCAAGGCGAAAAGATACCTGTCA
ACACACTTGCCAAGCTTATCAAATTCAAGTTGTTATCCATTAAAGCCAGT
GACATTGAAAGAAGAAATGCTGAAAAGAAGTTAACCTGATTGGCGACCAT
TAGTGTATTTTCTTGGTCCACAGCAATATTCAGATGTGGCTGTTGTCAAC
TTGTTGAGTGATACCATCAAAACTGGTGTCAGAAAACTCTTCAATGTTGT
TGATTATTACAAATTGTTGGTGGAGGAAAAATTCAAATTAAAAACGATGC
CGAAAGCTGCAAGAGGGAAAAGTGGCACAACATCTGAGGCTTGTAATTGG
GAAGCTGAATTGGCACAAGCTGTTTTTCAAGAGCTTCTACAACTATATCA
AAACCAAAGCTTGACCAAAGTGCATCAAAGACTGTCAGTCCAAATAGAGC
GCGATCAGCAGGTTCTCCAGGAAAAGGAGGCAAGAAAGGCGCAAAGAAAG
AACCAGAAAAACCGTTGTCACCCAAAAAAGAGACCAAATTAAAGAAACGT
GGCGAAGAAAGTGAAGTGATTGAATACATTGGTAAGTGGAATTCTTTAGA
TAAAGTGGTTATTCGGTATAAAAGGTTAATCTGAGCAAAAGAGATTGCTA
CCCAAACAAAAGGGAGTAAGGGCAAAGGCGTTCCAGGAACCAAACCACAG
TATTCAGAGATTTGTGAGCAAGTCAAATTATTGTTGGATCAAGGCGAAAA
GATACCTGTCAACACACTTGCCAAGCTTATCAAATTCAAGTTGTTATCCA
TTAAAGCCAGTGACATTGAAAGAAGAAATGCTGAAAAGAAGTTAACCTGA
TTGGCGACCATTAGTGTATTTTCTTGGTCCACAGCAATATTCAGATGTGG
CTGTTGTCAACTTGTTGAGTGATACCATCAAAACTGGTGTCAGAAAACTC
TTCAATGTTGTTGATTATTACAAATTGTTGGTGGAGGAAAAATTCAAATT
AAAAACGATGCCGAAAGCTGCAAGAGGGAAAAGTGGCACAACATCTGAGG
CTTGTAATTGGGAAGCTGAATTGGCACAAGCTGTTTTTCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00014601-exon-sc0000190-1575043694:240166..240274 | TCONS_00014601-exon-sc0000190-1575043694:240166..240274 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1575043694:238117..238257 | TCONS_00014601-exon-sc0000190-1575043694:238117..238257 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1575043694:237682..237892 | TCONS_00014601-exon-sc0000190-1575043694:237682..237892 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1575043694:236362..237168 | TCONS_00014601-exon-sc0000190-1575043694:236362..237168 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1510915933:240166..240274 | TCONS_00014601-exon-sc0000190-1510915933:240166..240274 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1510915933:238117..238257 | TCONS_00014601-exon-sc0000190-1510915933:238117..238257 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1510915933:237682..237892 | TCONS_00014601-exon-sc0000190-1510915933:237682..237892 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1510915933:236362..237168 | TCONS_00014601-exon-sc0000190-1510915933:236362..237168 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1491911889:240166..240274 | TCONS_00014601-exon-sc0000190-1491911889:240166..240274 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1491911889:238117..238257 | TCONS_00014601-exon-sc0000190-1491911889:238117..238257 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1491911889:237682..237892 | TCONS_00014601-exon-sc0000190-1491911889:237682..237892 | Clytia hemisphaerica | exon |
| TCONS_00014601-exon-sc0000190-1491911889:236362..237168 | TCONS_00014601-exon-sc0000190-1491911889:236362..237168 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:236362..240274 - |
Blast
BLAST of TCONS_00014601 vs. Swiss-Prot (Human)
Match: SPG17 (Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.076e-18 Identity = 57/169 (33.73%), Postives = 86/169 (50.89%), Query Frame = 2
Query: 26 PKAARGKSGTTSEACNWEAELAQAVFQEPDWRPLVYFLGPQQYSDVAVVNLLSDTIKTGVRKLFNVVDYYKLLVEAKEIATQTKGSKGK----GVPGTKPQYSEICEQVKLLLDQGEKIPVNTLAKLIKFKLLSIKASDIERRNAEKKLTSTTISKPKLDQSASKTVSP 520
PK +G + TS WE L A F + DW+ + F+ Q D ++ L+ ++ RKLF++V + +L + EI T + K V G P Y E+ K ++D GEK+ + + KL+KF+LL IK D +RR EKK+ KPKL++ K SP
Sbjct: 3 PKKEKGGTVNTSSKI-WEPSLIAAQFNQNDWQASIAFVVGNQIEDDLLIQALTVAVQVPQRKLFSMVSWQDILQQINEINTLVGSASSKKAKKPVGGNAPLYYEVLTAAKAIMDSGEKLTLPLIGKLLKFQLLQIKFKDQQRRENEKKVIE---DKPKLEKDKGKAKSP 167
The following BLAST results are available for this feature:
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