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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014576 ID=TCONS_00014576|Name=TCONS_00014576|organism=Clytia hemisphaerica|type=transcript|length=2073bpRun BLAST on NCBI transcript from alignment at sc0000190:357100..460062+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014576 ID=TCONS_00014576|Name=TCONS_00014576|organism=Clytia hemisphaerica|type=transcript|length=102963bp|location=Sequence derived from alignment at sc0000190:357100..460062+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014576 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 177.948 bits (450), Expect = 5.598e-46 Identity = 161/701 (22.97%), Postives = 306/701 (43.65%), Query Frame = 1
Query: 1 MDNSALGWRPLANAWLAKQDQTYFHVLQRSFHKSVDRCLQF-VQDEARCCVTLSEGXXXXXXXXXXXXXXRDHQESLAGELHIERLYLFSLIWTFGSLLIHDQERH---QFXXXXXXXXXXXPDDDREISVFDYFVDESGEWDSWATRLSEASL-DESIDSFGQIFVETVSSHRTKFLISQYMEMGNNILLAGPTGCGKTKIIQDLLKNTESKNRVTLNIAFSNSTDASFLQNFIAGNLHHRQGFVYGAKKKKTLRIFIDDIHLPKHDICDVQSSNQLLRQLVDQQMIYTLQSKHFKPKYIEGMNLLTSLNPTTLDSKSGLQRLLGRFGVFYLPQPNEKEIFSMASVILEANMSYEQGMSLPQHLHSLIVELS--TKIVSAVTMNLQHHALSKFNHYKFNIGDLKHIFQMLRRCPEEERVDEQGAYLLNFWYYETQRTFSDRILNPNDIALFERTFDSQL-HQLMRENKVEFEKQI---FTTFLSDSHLRMHRPANSKSNKKKHVHQLLTSIDDLDKCIEAYENAFSNET--GETMDIVWHSFHKEQFIKCHRILSQENRGNLITVTSAPNQMLCIVKLSTFMLSHQFFDVDCT---NKASFIKCLRVAVRIAGCDNRNVSLCIQTSNLKDLDCLGALHSIMLLGEYVPLFSETEIHGLLVALRPKIKRAFSEYVTAPMK---FFTKCVMKNLHVIFLTMP 2046
M +S L W P+ +L K+ +L++ + +S +F +Q+ L + S + + Q + H+ RL++F+L+W+ G+ L D R + P + FDY+V G W W TR E ++ +G I V V + RT FLI + G +LL G G KT II+ + + + + ++ FS++T Q I + R G YG K + +FIDD+++P + Q +N+++RQL++Q Y L+ ++ L ++P QRL +F +F P+E + + VI + ++G S + + + +L T+ + +T +KF HY FN+ DL ++Q + E V ++ LL W +E +R +DR +D+ F++ S + + E K+ + I F FL D+ + + +++ + S L + + + + NE+ G MD+V+ + +K R++ + +GN + V + + +L++F+ + F + T N ++ ++ L+V R AG + ++ + +KD L +++++ GE LF+ EI + L +K+ F + +F V +NLH++ P
Sbjct: 2398 MSSSILDWSPILEGFLKKRSPQEAEILRQLYTESFPDLYRFCIQNLEYKMEVLEAFVITQSINMLQGLIPLKEQGGEVSQAHLGRLFVFALLWSAGAALELDGRRRLELWLRSRPTGTLELPPPAGPGDTAFDYYVAPDGTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDNVRTDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIVRQLMEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGG-GRNDIPQRLKRQFSIFNCTLPSEASVDKIFGVIGVGHYCTQRGFS--EEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKF-HYVFNLRDLSRVWQGMLNTTSE--VIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDCGIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLY-NESIRGAGMDMVFFADAMVHLVKISRVI-RTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEVSNLFARDEIDEINSDLASVMKKEFPRCLPTNENLHDYFMSRVRQNLHIVLCFSP 3090 The following BLAST results are available for this feature:
BLAST of TCONS_00014576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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